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1.
Small ; 20(16): e2307579, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38044290

ABSTRACT

The design and fabrication of novel carbon hosts with high conductivity, accelerated electrochemical catalytic activities, and superior physical/chemical confinement on sulfur and its reaction intermediates polysulfides are essential for the construction of high-performance C/S cathodes for lithium-sulfur batteries (LSBs). In this work, a novel biofermentation coupled gel composite assembly technology is developed to prepare cross-linked carbon composite hosts consisting of conductive Rhizopus hyphae carbon fiber (RHCF) skeleton and lamellar sodium alginate carbon (SAC) uniformly implanted with polarized nanoparticles (V2O3, Ag, Co, etc.) with diameters of several nanometers. Impressively, the RHCF/SAC/V2O3 composites exhibit enhanced physical/chemical adsorption of polysulfides due to the synergistic effect between hierarchical pore structures, heteroatoms (N, P) doping, and polar V2O3 generation. Additionally, the catalytic conversion kinetics of cathodes are effectively improved by regulating the 3D carbon structure and optimizing the V2O3 catalyst. Consequently, the LSBs assembled with RHCF/SAC/V2O3-S cathode show exceptional cycle stability (capacity retention rate of 94.0% after 200 cycles at 0.1 C) and excellent rate performance (specific capacity of 578 mA h g-1 at 5 C). This work opens a new door for the fabrication of hyphae carbon composites via fermentation for electrochemical energy storage.

2.
BMC Immunol ; 23(1): 42, 2022 09 10.
Article in English | MEDLINE | ID: mdl-36088289

ABSTRACT

BACKGROUND: The significance of S100A8/A9 and S100A12 in anti-neutrophil cytoplasmic antibody (ANCA)-associated vasculitis (AAV) has not been clarified. This study was dedicated to exploring the potential pathogenic roles of S100A8/A9 and S100A12 in patients with myeloperoxidase (MPO)-ANCA-positive vasculitis. METHODS: Serum and urine concentrations of S100A8/A9 and S100A12 of forty-two AAV patients were evaluated. The influence of S100A8/A9 and S100A12 on the chemotaxis, the apoptosis, the release of IL-1ß, the complement activation, the respiratory burst, as well as the neutrophil extracellular traps (NETs) formation of MPO-ANCA-activated neutrophils was investigated. RESULTS: The serum and urine S100A8/A9 and S100A12 of active MPO-AAV significantly increased (compared with inactive AAV and healthy controls, p < 0.001) and were correlated with the severity of the disease. In vitro study showed that S100A8/A9 and S100A12 activated the p38 MAPK/NF-κB p65 pathway, increased the chemotaxis index (CI) and the release of IL-1ß, extended the life span, and enhanced the complement activation ability of MPO-ANCA-activated neutrophils. The Blockade of TLR4 and RAGE inhibited the effects of S100A8/A9 and S100A12. All above-mentioned effects of S100A8/A9 and S100A12 were ROS-independent because neither S100A8/A9 nor S100A12 enhanced the ROS formation and NETs formation of MPO-ANCA-activated neutrophils. CONCLUSION: S100A8/A9 and S100A12 serve as markers for assessing the disease severity, and they may also play a role in MPO-AAV pathogenesis.


Subject(s)
Anti-Neutrophil Cytoplasmic Antibody-Associated Vasculitis , S100A12 Protein , Antibodies, Antineutrophil Cytoplasmic , Calgranulin A , Humans , Peroxidase/metabolism , Reactive Oxygen Species/metabolism , S100A12 Protein/metabolism
3.
Biochem Biophys Res Commun ; 628: 104-109, 2022 11 05.
Article in English | MEDLINE | ID: mdl-36084547

ABSTRACT

Metastasis is a major cause of breast cancer mortality and the current study found histone demethylase, KDM2A, expression to be negatively correlated with breast cancer metastasis. KDM2A knockdown greatly promoted migration and invasion of breast cancer cells. The histone demethylase activity of KDM2A downregulated EGF transcription and suppressed the EGF-TSPAN8 pathway. Inhibition of breast cancer cell migration was also dependent on the histone demethylase activity of KDM2A. A novel mechanism of KDM2A-suppression of the EGF-TSPAN8 pathway which inhibited breast cancer cell migration and invasion is reported.


Subject(s)
Breast Neoplasms , F-Box Proteins , Jumonji Domain-Containing Histone Demethylases , Breast Neoplasms/genetics , Breast Neoplasms/pathology , Cell Line, Tumor , Cell Movement/genetics , Cell Proliferation/genetics , Cell Proliferation/physiology , Epidermal Growth Factor/metabolism , Epidermal Growth Factor/pharmacology , F-Box Proteins/genetics , F-Box Proteins/metabolism , Female , Gene Expression Regulation, Neoplastic , Histone Demethylases/genetics , Histone Demethylases/metabolism , Humans , Jumonji Domain-Containing Histone Demethylases/metabolism , Tetraspanins/metabolism
4.
Proteins ; 89(7): 832-844, 2021 07.
Article in English | MEDLINE | ID: mdl-33576138

ABSTRACT

Protein folding is a popular topic in the life science. However, due to the limited sampling ability of experiments and simulations, the general folding mechanism is not yet clear to us. In this work, we study the folding of the N-terminal domain of ribosomal protein L9 (NTL9) in detail by a mixing replica exchange molecular dynamics method. The simulation results are close to previous experimental observations. According to the Markov state model, the folding of the protein follows a nucleation-condensation path. Moreover, after the comparison to its 39-residue ß-α-ß motif, we find that the helix at the C-terminal has a great influence on the folding process of the intact protein, including the nucleation of the key residues in the transition state ensemble and the packing of the hydrophobic residues in the native state.


Subject(s)
Ribosomal Proteins/chemistry , Humans , Hydrophobic and Hydrophilic Interactions , Kinetics , Molecular Dynamics Simulation , Protein Domains , Protein Folding , Protein Structure, Secondary , Thermodynamics
5.
Biophys J ; 119(7): 1416-1426, 2020 10 06.
Article in English | MEDLINE | ID: mdl-32918889

ABSTRACT

The k-turn is a widespread and important motif in RNA. According to the internal hydrogen bond network, it has two stable states, called N1 and N3. The relative stability between the states changes with the environment. It is able to accept different conformations in different environments. This is called the "plasticity" of a molecule. In this work, we study the plasticity of k-turn by the mixing REMD method in explicit solvent. The results are concluded as follows. First, N1 and N3 are almost equally stable when k-turn is in the solvent alone. The molecule is quite flexible as a hinge. However, after binding to different proteins, such as the proteins L7Ae and L24e, k-turn falls into one global minimum. The preferred state could be either N1 or N3. On the contrary, the other nonpreferred state becomes unstable with a weaker binding affinity to the protein. It reveals that RNA-binding protein is able to modulate the representative state of k-turn at equilibrium. This is in agreement with the findings in experiments. Moreover, free energy calculations show that the free energy barrier between the N1 and N3 states of k-turn increases in the complexes. The state-to-state transition is greatly impeded. We also give a deep discussion on the mechanism of the high plasticity of k-turn in different environments.


Subject(s)
RNA-Binding Proteins , RNA , Hydrogen Bonding , Nucleic Acid Conformation
6.
J Comput Chem ; 41(2): 156-164, 2020 01 15.
Article in English | MEDLINE | ID: mdl-31603251

ABSTRACT

Reliable conformational sampling and trajectory analysis are always important to the study of the folding or binding mechanisms of biomolecules. Generally, one has to prepare many complicated parameters and follow a lot of steps to obtain the final data. The whole process is too complicated to new users. In this article, we provide a convenient and user-friendly tool that is compatible to AMBER, called fast sampling and analysis tool (FSATOOL). FSATOOL has some useful features. First and the most important, the whole work is extremely simplified into two steps, one is the fast sampling procedure and the other is the trajectory analysis procedure. Second, it contains several powerful sampling methods for the simulation on graphics process unit, including our previous mixing replica exchange molecular dynamics method. The method combines the advantages of the biased and unbiased simulations. Finally, it extracts the dominant transition pathways automatically from the folding network by Markov state model. Users do not need to do the tedious intermediate steps by hand. To illustrate the usage of FSATOOL in practice, we perform one simulation for a RNA hairpin in explicit solvent. All the results are presented. © 2019 Wiley Periodicals, Inc.


Subject(s)
Molecular Dynamics Simulation , RNA/chemistry , Nucleic Acid Conformation , Solvents/chemistry
7.
Anal Chem ; 91(6): 4004-4009, 2019 Mar 19.
Article in English | MEDLINE | ID: mdl-30781945

ABSTRACT

Precise knowledge of gas diffusivity in liquids is critical for describing complex multiphase reaction systems. Here we present a high-throughput flow concept to measure gas diffusivity in liquids. This strategy takes advantage of the tube-in-tube reactor design whereby semipermeable Teflon AF-2400 tubes facilitate fast mass transfer between gas and liquid without directly contacting the two fluids. Coupled pseudosteady-state flux balances over the gas and liquid describe the gas dissolution rate and corresponding diffusivity with the aid of a single gas flow meter and a continuously ramped liquid flow rate. This in situ method demonstrates excellent accuracy in diffusion coefficient measurements, with less than 5% deviation from established techniques.

8.
J Comput Chem ; 40(20): 1806-1815, 2019 Jul 30.
Article in English | MEDLINE | ID: mdl-30942500

ABSTRACT

Constructing a free energy landscape for a large molecule is difficult. One has to use either a high temperature or a strong driving force to enhance the sampling on the free energy barriers. In this work, we propose a mixed method that combines these two kinds of acceleration strategies into one simulation. First, it applies an adaptive biasing potential to some replicas of the molecule. These replicas are particularly accelerated in a collective variable space. Second, it places some unbiased and exchangeable replicas at various temperature levels. These replicas generate unbiased sampling data in the canonical ensemble. To improve the sampling efficiency, biased replicas transfer their state variables to the unbiased replicas after equilibrium by Monte Carlo trial moves. In comparison to previous integrated methods, it is more convenient for users. It does not need an initial reference biasing potential to guide the sampling of the molecule. And it is also unnecessary to insert many replicas for the requirement of passing the free energy barriers. The free energy calculation is accomplished in a single stage. It samples the data as fast as a biased simulation and it processes the data as simple as an unbiased simulation. The method provides a minimalist approach to the construction of the free energy landscape. © 2019 Wiley Periodicals, Inc.

9.
Odontology ; 107(1): 37-45, 2019 Jan.
Article in English | MEDLINE | ID: mdl-30022371

ABSTRACT

The purpose of this study was to evaluate the effects of a poly(lactic-co-glycolic acid) (PLGA) membrane containing fluvastatin on bone regeneration at bone defects in rat calvaria and tibia for possible use as a guided bone regeneration (GBR) membrane. PLGA and fluvastatin-containing PLGA (PLGA-fluvastatin) membranes were prepared and mechanical properties were evaluated. Standardized bony defects were created in rat calvaria and the right tibia, and covered with a PLGA or PLGA-fluvastatin membrane. Bone regeneration was evaluated using image analysis based on histologic examination. At 4 and 8 weeks after membrane implantation, the PLGA-fluvastatin group displayed enhanced new bone formation around the edge of the defect compared with the PLGA membrane group in the calvarial model. Thick bone regeneration was observed in tibia-defect sites in the PLGA-fluvastatin membrane group. These results suggest that the PLGA-containing fluvastatin membrane prepared in this study may potentially be used as a GBR membrane.


Subject(s)
Bone Regeneration/drug effects , Fluvastatin/pharmacology , Guided Tissue Regeneration/methods , Polylactic Acid-Polyglycolic Acid Copolymer/pharmacology , Animals , Drug Combinations , Male , Materials Testing , Membranes, Artificial , Rats , Rats, Wistar , Skull/surgery , Tensile Strength , Tibia/surgery
10.
Anal Chem ; 89(16): 8524-8530, 2017 08 15.
Article in English | MEDLINE | ID: mdl-28737892

ABSTRACT

Data on the solubilities of gases in liquids are foundational for assessing a variety of multiphase separations and gas-liquid reactions. Taking advantage of the tube-in-tube reactor design built with semipermeable Teflon AF-2400 tubes, liquids can be rapidly saturated without direct contacting of gas and liquid. The gas solubility can be determined by performing steady-state flux balances of both the gas and liquid flowing into the reactor system. Using this type of reactor, a fully automated strategy has been developed for the rapid in situ measurement of gas solubilities in liquids. The developed strategy enables precise gas solubility measurements within 2-5 min compared with 4-5 h using conventional methods. This technique can be extended to the discrete multipoint steady-state and continuous ramped-multipoint data acquisition methods. The accuracy of this method has been validated against several gas-liquid systems, showing less than 2% deviation from known values. Finally, this strategy has been extended to measure the temperature dependence of gas solubilities in situ and to estimate the local enthalpy of dissolution across a defined temperature range.

11.
Zootaxa ; 3790: 477-86, 2014 Apr 22.
Article in English | MEDLINE | ID: mdl-24869880

ABSTRACT

A new chlorogomphid, Chlorogomphus (Orogomphus) auripennis spec. nov. (holotype male; Mt Nankunshan, Longmen County, Guangdong Province, China, 20. V. 2008) is described and illustrated. It is the first species belonging to the subgenus Orogomphus recorded from mainland China. The holotype will be deposited in the Collection of Aquatic Animals, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan City, Hubei Province, China. Chlorogomphus auratus Martin, 1910 and Chloropetalia selysi (Fraser, 1929) are recoded from Chinese territory for the first time. The total number of Chlorogomphidae in China reaches 20. Description of the hitherto unknown female of Chlorogomphus yokoii Karube, 1995 is provided.


Subject(s)
Biodiversity , Odonata/anatomy & histology , Animals , China , Female , Male
12.
Zootaxa ; 3795: 489-93, 2014 May 14.
Article in English | MEDLINE | ID: mdl-24870492

ABSTRACT

Aeshna shennnong sp. nov. (holotype male: Dajiuhu national wetland park in Shennongjia National Nature Reserve, Shennongjia City, Hubei Province, China, 28. VIII. 2013) is described, illustrated and compared with its most similar congener, A. petalura Martin, 1908. The holotype will be deposited in the Collection of Aquatic Animals, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan City, Hubei Province, China. New distribution records of A. petalura from mainland China are also provided.


Subject(s)
Biodiversity , Odonata/anatomy & histology , Animals , China , Ecosystem , Female , Male
13.
Zootaxa ; 3779: 389-93, 2014 Mar 17.
Article in English | MEDLINE | ID: mdl-24871733

ABSTRACT

Atrocalopteryx fasciata Yang, Hämäläinen & Zhang, spec. nov. (holotype ♂, from China, Yunnan, Dehong, Yingjiang, deposited at Odonata Collection of College of Agriculture and Life Sciences, Dali University, Dali, Yunnan, China) is described and illustrated from the male sex. It is compared with Atrocalopteryx laosica (Fraser, 1933).


Subject(s)
Odonata/anatomy & histology , Odonata/classification , Animals , China , Female , Male , Wings, Animal/anatomy & histology
14.
FEBS Open Bio ; 14(3): 444-454, 2024 Mar.
Article in English | MEDLINE | ID: mdl-38151757

ABSTRACT

SETDB2 is a H3K9 histone methyltransferase required for accurate chromosome segregation. Its H3K9 histone methyltransferase activity was reported to be associated with chromosomes during metaphase. Here, we confirm that SETDB2 is required for mitosis and accurate chromosome segregation. However, these functions are independent of its histone methyltransferase activity. Further analysis showed that SETDB2 can interact with BUBR1, and is required for CDC20 binding to BUBR1 and APC/C complex and CYCLIN B1 degradation. The ability of SETDB2 to regulate the binding of CDC20 to BUBR1 or APC/C complex, and stabilization of CYCLIN B1 are also independent of its histone methyltransferase activity. These results suggest that SETDB2 interacts with BUBR1 to promote binding of CDC20 to BUBR1 and APC3, then degrades CYCLIN B1 to ensure accurate chromosome segregation and mitosis, independently of its histone methyltransferase activity.


Subject(s)
Chromosome Segregation , Protein Serine-Threonine Kinases , Protein Serine-Threonine Kinases/metabolism , Anaphase-Promoting Complex-Cyclosome/genetics , Anaphase-Promoting Complex-Cyclosome/metabolism , Cyclin B1/genetics , Cyclin B1/metabolism , Cdc20 Proteins/genetics , Cdc20 Proteins/metabolism , Spindle Apparatus/metabolism , Cell Cycle Proteins/genetics
15.
Adv Healthc Mater ; : e2303688, 2024 Mar 13.
Article in English | MEDLINE | ID: mdl-38481054

ABSTRACT

Bacterial infections in wounds continue to be a major challenge in clinical settings worldwide and represent a significant threat to human health. This work proposes novel expandable and versatile methods for solidifying sodium alginate (SA) with metal ions (such as Fe3+ , Co2+ , Ni2+ , Cu2+ , and Zn2+ ) to create Metal-Alginate (M-Alg) hydrogel with adjustable morphology, composition, and microstructure. It conforms to the wound site, protects against second infection, reduces inflammation, and promotes the healing of infected wounds. Among these hydrogels, Cu-Alginate (Cu-Alg) shows excellent sterilization effect and good efficacy against both gram-positive and gram-negative bacteria, including multidrug-resistant (MDR) strains such as Methicillin-resistant Staphylococcus aureus (MRSA) and Carbapenem-resistant Klebsiella pneumoniae (CRKP) due to its dual antibacterial mechanisms: contact-killing and reactive oxygen species (ROS) burst. Importantly, it exhibits low cytotoxicity and biodegradability. This simple and cost-effective gel-based system has the potential to introduce an innovative approach to the management of wound infection and offers promising new perspectives for the advancement of wound care practice.

16.
Zootaxa ; 3620: 223-44, 2013.
Article in English | MEDLINE | ID: mdl-26120706

ABSTRACT

The larvae of seven species of Chlorogomphidae from South China are described based on reared larvae, i.e. Chlorogomphus kitawakii Karube, C. nasutus nasutus Needham, C. papilio Ris, C. shanicus Wilson, C. usudai Ishida, C. yokoii Karube and Chloropetalia soarer Wilson. The adult female of C. kitawakii is first described. Biological information on Chlorogomphidae is provided and a diagnosis of the family proposed.


Subject(s)
Odonata/anatomy & histology , Animals , China , Female , Male , Nymph/anatomy & histology , Nymph/classification , Nymph/growth & development , Odonata/classification , Odonata/growth & development
17.
Zootaxa ; 3741: 254-64, 2013 Nov 27.
Article in English | MEDLINE | ID: mdl-25112987

ABSTRACT

Four new species of the genus Planaeschna, P. robusta sp. nov. (holotype male; Mt. Emeishan, Emeishan City, Sichuan Province, China, 16. VIII. 2007), P. maculifrons sp. nov. (holotype male; Mt. Emeishan, Emeishan City, Sichuan Province, China, 20. VIII. 2007), P. caudispina sp. nov. (holotype male; Mt. Qingchengshan, Dujiangyan City, Sichuan Province, China, 30. VIII. 2007) and P. monticola sp. nov. (holotype male; Sanjiacun Stream, Fengyi Town, Dali City, Yunnan Province, China, 19. XI. 2012) are described and illustrated and diagnosed from their congeners. All the holotypes have been deposited in the Collection of Aquatic Animals, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan City, Hubei Province, China. Brief notes on the biology of each species are also provided.


Subject(s)
Odonata/classification , Animals , China , Dipterocarpaceae , Female , Male , Odonata/anatomy & histology
18.
Front Public Health ; 11: 1098908, 2023.
Article in English | MEDLINE | ID: mdl-37780433

ABSTRACT

Using the social support theory for reference, a subject-object influencing mechanism model of China's rehabilitation assistance system for disabled children is built based on the survey data on 1,698 disabled children in 243 designated rehabilitation institutions in Hu'nan Province as well as the topic of the assessment and optimization of the rehabilitation assistance system for disabled children. The analysis using the structural equation modeling reveals that the inclusive welfare effect of the rehabilitation assistance system for disabled children has emerged, and disabled children receiving free rehabilitation in the designated institutions have achieved good rehabilitation results as a whole, however, disabled children of different age groups have generational differences in the rehabilitation effects, and the preferential aspect of the system needs to be strengthened. Government support, institutional support, and social support have positive non-equilibrium effects in enhancing the rehabilitation effects of disabled children. Institutional support plays a partial mediating role between government support, family support, and disabled children's rehabilitation effects, showing that the current social support system for the rehabilitation assistance of disabled children is experiencing structural, social and kernel changes, to evolve from the traditional closed and disconnected one-way resource support to open, coordinated, and interactive multi-support, and gradually become a comprehensive and efficient interactive support system with families as the foundation, institutions as the main body, and the government as the core.


Subject(s)
Disabled Children , Child , Humans , Disabled Children/rehabilitation , East Asian People , Social Welfare , Social Support , Family Support
19.
Front Oncol ; 13: 1273465, 2023.
Article in English | MEDLINE | ID: mdl-37886178

ABSTRACT

Orbital meningioma is a rare type of orbital tumor with high invasiveness and recurrence rates, making it extremely challenging to treat. Due to the special location of the disease, surgery often cannot completely remove the tumor, requiring postoperative radiation therapy. Here, we report a case of an elderly male patient with right-sided proptosis, visual impairment, and diplopia. Imaging diagnosis revealed a space-occupying lesion in the extraconal space of the right orbit. Pathological and immunohistochemical examination of the resected tumor confirmed it as a grade 3 anaplastic meningioma. Two months after surgery, the patient complained of right eye swelling and a magnetic resonance imaging (MRI) scan showed a recurrence of the tumor. The patient received helical tomotherapy (TOMO) in the postoperative tumor bed and high-risk areas within the orbit with a total dose of 48Gy. However, there was no significant improvement in the patient's right eye swelling, and the size of the recurrent lesion showed no significant change on imaging. Gamma knife multifractionated stereotactic radiosurgery (MF-SRS) was then given to the recurrent lesion with 50% prescription dose 13.5Gy/3f, once every other day. An imaging diagnosis performed 45 days later showed that the tumor had disappeared completely. The patient's vision remained unchanged, but diplopia was significantly relieved after MF-SRS. We propose a new hybrid treatment model for recurrent orbital meningioma, where conventional radiation therapy ensures local control of high-risk areas around the postoperative cavity, and MF-SRS maximizes the radiation dose to recurrent lesion areas while protecting surrounding tissues and organs.

20.
Eur J Obstet Gynecol Reprod Biol ; 289: 140-144, 2023 Oct.
Article in English | MEDLINE | ID: mdl-37660509

ABSTRACT

We report a case of a fetus with 46,XX testicular disorder of sex development detected prenatally. This fetus was found abnormally due to non-invasive prenatal testing. Amniocentesis revealed SRY gene on the X chromosome of the fetus. The related literature was reviewed, and the advantages and limitations of various prenatal diagnostic techniques were discussed. The combination of non-invasive prenatal testing and various prenatal diagnostic techniques has enabled more fetuses with sex reversal to be detected.


Subject(s)
Genes, sry , Prenatal Diagnosis , Female , Pregnancy , Humans , Amniocentesis , Sexual Development , Fetus
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