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1.
J Virol ; 97(11): e0095823, 2023 Nov 30.
Article in English | MEDLINE | ID: mdl-37846983

ABSTRACT

IMPORTANCE: As an emerging porcine enteropathogenic coronavirus that has the potential to infect humans, porcine deltacoronavirus (PDCoV) is receiving increasing attention. However, no effective commercially available vaccines against this virus are available. In this work, we designed a spike (S) protein and receptor-binding domain (RBD) trimer as a candidate PDCoV subunit vaccine. We demonstrated that S protein induced more robust humoral and cellular immune responses than the RBD trimer in mice. Furthermore, the protective efficacy of the S protein was compared with that of inactivated PDCoV vaccines in piglets and sows. Of note, the immunized piglets and suckling pig showed a high level of NAbs and were associated with reduced virus shedding and mild diarrhea, and the high level of NAbs was maintained for at least 4 months. Importantly, we demonstrated that S protein-based subunit vaccines conferred significant protection against PDCoV infection.


Subject(s)
Coronavirus Infections , Coronavirus , Swine Diseases , Vaccines, Subunit , Animals , Female , Humans , Mice , Coronavirus/genetics , Coronavirus Infections/prevention & control , Coronavirus Infections/veterinary , Deltacoronavirus , Swine , Vaccines, Subunit/administration & dosage
2.
BMC Plant Biol ; 23(1): 79, 2023 Feb 06.
Article in English | MEDLINE | ID: mdl-36740701

ABSTRACT

BACKGROUND: Chestnut blight, one of the most serious branch diseases in Castanea caused by Cryphonectria parasitica, which has ravaged across American chestnut and most of European chestnut since the early twentieth century. Interestingly, the Chinese chestnut is strongly resistant to chestnut blight, shedding light on restoring the ecological status of Castanea plants severely affected by chestnut blight. To better explore the early defense of Chinese chestnut elicited in response to C. parasitica, the early stage of infection process of C. parasitica was observed and RNA sequencing-based transcriptomic profiling of responses of the chestnut blight-resistant wild resource 'HBY-1' at 0, 3 and 9 h after C. parasitica inoculation was performed. RESULTS: First, we found that 9 h was a critical period for Chinese chestnut infected by C. parasitica, which was the basis of further study on transcriptional activation of Chinese chestnut in response to chestnut blight in the early stage. In the transcriptome analysis, a total of 283 differentially expressed genes were identified between T9 h and Mock9 h, and these DEGs were mainly divided into two clusters, one of which was metabolism-related pathways including biosynthesis of secondary metabolites, phenylpropanoid biosynthesis, amino sugar and nucleotide sugar metabolism, and photosynthesis; the other was related to plant-pathogen interaction and MAPK signal transduction. Meanwhile, the two clusters of pathways could be connected through junction among phosphatidylinositol signaling system, phytohormone signaling pathway and α-Linolenic acid metabolism pathway. It is worth noting that genes associated with JA biosynthesis and metabolic pathway were significantly up-regulated, revealing that the entire JA metabolic pathway was activated in Chinese chestnut at the early stage of chestnut blight infection. CONCLUSION: We identified the important infection nodes of C. parasitica and observed the morphological changes of Chinese chestnut wounds at the early stage of infection. In response to chestnut blight, the plant hormone and MAPK signal transduction pathways, plant-pathogen interaction pathways and metabolism-related pathways were activated at the early stage. JA biosynthesis and metabolic pathway may be particularly involved in the Chinese chestnut resistance to chestnut blight. These results contributes to verifying the key genes involved in the resistance of Chinese chestnut to C. parasitica.


Subject(s)
Plant Diseases , Gene Expression Profiling , Plant Diseases/genetics
3.
Glob Chang Biol ; 29(15): 4383-4396, 2023 08.
Article in English | MEDLINE | ID: mdl-37249105

ABSTRACT

Given that already-observed temperature increase within cities far exceeds the projected global temperature rise by the end of the century, urban environments often offer a unique opportunity for studying ecosystem response to future warming. However, the validity of thermal gradients in space serving as a substitute for those in time is rarely tested. Here, we investigated vegetation phenology dynamics in China's 343 cities and empirically test whether phenological responses to spatial temperature rise in urban settings can substitute for those to temporal temperature rise in their natural counterparts based on satellite-derived vegetation phenology and land surface temperature from 2003 to 2018. We found prevalent advancing spring phenology with "high confidence" and delaying autumn phenology with "medium confidence" under the context of widespread urban warming. Furthermore, we showed that space cannot substitute for time in predicting phenological shifts under climate warming at the national scale and for most cities. The thresholds of ~11°C mean annual temperature and ~600 mm annual precipitation differentiated the magnitude of phenological sensitivity to temperature across space and through time. Below those thresholds, there existed stronger advanced spring phenology and delayed autumn phenology across the spatial urbanization gradients than through time, and vice versa. Despite the complex and diverse relationships between phenological sensitivities across space and through time, we found that the directions of the temperature changes across spatial gradients were converged (i.e., mostly increased), but divergent through temporal gradients (i.e., increased or decreased without a predominant direction). Similarly, vegetation phenology changes more uniformly over space than through time. These results suggested that the urban environments provide a real-world condition to understand vegetation phenology response under future warming.


Subject(s)
Biodiversity , Ecosystem , Temperature , Climate Change , Plant Development , Seasons
4.
Microb Pathog ; 170: 105723, 2022 Sep.
Article in English | MEDLINE | ID: mdl-35981694

ABSTRACT

Porcine deltacoronavirus (PDCoV) is an emenging swine enteropathogenic coronavirus that can cause high mortality rate. It affects pigs of all ages, but most several in neonatal piglets. Little is known regarding the pathogenicity of PDCoV against 27-day-old piglets. In this study, 27-day-old piglets were experimentally infected with PDCoV CZ2020 from cell culture, the challenged piglets do not have obvious symptoms from 1 to 7 days post-challenge (DPC), while viral shedding was detected in rectal swab at 1 DPC. Tissues of small intestines displayed slight macroscopic and microscopic lesions with no viral antigen detection. On the other hand, 27-day-old piglets were infected with PDCoV from intestinal contents, the piglets developed mild to severe diarrhea, shedding increasing from 2 to 7 DPC, and developed macroscopic and microscopic lesions in small intestines with clear viral antigen confirmed by immunohistochemistry staining. Indicating the small intestine was still the major target organ in PDCoV-challenged pigs at the age of 27-day-old. Diarrhea caused by PDCoV from intestinal contents in 27-day-old piglets is less reported. Thus, our results might provide new insights into the pathogenesis of PDCoV.


Subject(s)
Swine Diseases , Animals , Cell Culture Techniques , Deltacoronavirus , Diarrhea/pathology , Gastrointestinal Contents , Swine , Virulence
5.
Plant Dis ; 2022 May 06.
Article in English | MEDLINE | ID: mdl-35522960

ABSTRACT

Peach (Prunus persica (L.) Batsch) is one of the most popular fruits grown in Northern China. In July 2021, a fruit rot outbreak on the peach cultivar "Yonglian Sweet" occurred after unusual rains in Baoding, Hebei Province, China. Sixty peach trees from three orchards were assessed, and a 30% disease incidence was estimated. The disease initiated as a small concave spot on the fruit surface expanding circularly rotting the fruit (3-5 cm deep) with the appearance of grayish-white mycelia (Figure S1A). The infected fruit did not disintegrate but turned light brown. To identify the pathogen, 20 infected fruits were collected, and fruit tissues from lesion margins were inoculated on the potato dextrose agar (PDA) medium. A total of 15 fungal pure cultures with highly similar morphological characteristics were obtained by the hyphal-tipping method. The fungal culture formed smooth-edged colonies of extensive, dense, wooly aerial mycelium, with color changing from sienna to luteous, and to grayish-white along the radius of colonies (Figure S1B) Chlamydospores were extensive and developed micro-sclerotia after 20 d of growth. The conidiophore produced three branches in a "broom" shape, with the primary branch ranging 7.5-25.0 µm in length, the secondary branch 5.5-15.5 µm, and the tertiary branch 10-12.5 µm (N = 30). The top of the tertiary branch tapered and produced conidia. Conidia were colorless and culm-like, 40.0-57.5 µm long and 3.8-6.25 µm wide (N = 30). Hyphae occasionally produced spherical chlamydospores with a diameter of around 7.5 µm (N = 30). Conidia germinated after 12 h in moist conditions, and germ tubes originated from multiple points on the conidia. Based on these morphological features, the isolated fungus was identified as Calonectria spp. (Lombard et al. 2010). Six loci, including ITS, act, cmdA, his3, tef1, and tub2, were amplified and sequenced for molecular identification of an isolate F099 using primers listed in Table S1. The obtained ITS (528 bp, GenBank accession no. OL635556), act (263 bp, OL694221), cmdA (470 bp, OL694222), his3 (432 bp, OL694223), tef1 (487 bp, OL694224), and tub2 (535 bp, OL694225) sequences showed 100% similarity to the ex-type strain of Calonectria canadiana, CMW 23673 (accession nos. MT359667, MT334976, MT335206, MT335446, MT412737, and MT412958, respectively; Figure S1D) (Kang et al. 2001, Lechat et al. 2010, Liu et al. 2020). The isolate F099 of C. canadiana was further subjected to pathogenicity tests. Koch's postulates were performed by placing three mycelial disks (ten-day old, 5 mm) with conidia on the sterile needle-acupunctured surface of healthy fruits of the peach cultivar "Yonglian Sweet" (N= 10). Mock inoculations with sterile PDA disks were served as a control. All the inoculated fruits were kept in a moist chamber (25℃, 16-h light and 8-h dark period). The inoculation assay was repeated twice. Rotting symptoms developed on all the inoculated fruits about 5 days post-inoculation (dpi) and grayish-white mycelia appeared around ten days post inoculation while mock inoculated fruits did not show any rotting. The pathogen of interest was re-isolated from the inoculated fruits and validated as C. canadiana by ITS and tef1 sequences. All above evidence collectively indicates that the fungal pathogen causing the peach fruit rot is C. canadiana. The new host plant and new geographic distribution reported here will inform future management of this fungal species.

6.
Int J Mol Sci ; 23(24)2022 Dec 19.
Article in English | MEDLINE | ID: mdl-36555843

ABSTRACT

The plant cuticle is the outermost layer of the aerial organs and an important barrier against biotic and abiotic stresses. The climate varies greatly between the north and south of China, with large differences in temperature and humidity, but Chinese chestnut is found in both regions. This study investigated the relationship between the wax layer of chestnut leaves and environmental adaptation. Firstly, semi-thin sections were used to verify that there is a significant difference in the thickness of the epicuticular wax layer between wild chestnut leaves in northwest and southeast China. Secondly, a whole-genome selective sweep was used to resequence wild chestnut samples from two typical regional populations, and significant genetic divergence was identified between the two populations in the CmCER1-1, CmCER1-5 and CmCER3 genes. Thirty-four CER genes were identified in the whole chestnut genome, and a series of predictive analyses were performed on the identified CmCER genes. The expression patterns of CmCER genes were classified into three trends-upregulation, upregulation followed by downregulation and continuous downregulation-when chestnut seedlings were treated with drought stress. Analysis of cultivars from two resource beds in Beijing and Liyang showed that the wax layer of the northern variety was thicker than that of the southern variety. For the Y-2 (Castanea mollissima genome sequencing material) cultivar, there were significant differences in the expression of CmCER1-1, CmCER1-5 and CmCER3 between the southern variety and the northern one-year-grafted variety. Therefore, this study suggests that the CER family genes play a role in environmental adaptations in chestnut, laying the foundation for further exploration of CmCER genes. It also demonstrates the importance of studying the adaptation of Chinese chestnut wax biosynthesis to the southern and northern environments.


Subject(s)
Plant Leaves , Plant Leaves/genetics , Base Sequence , China
7.
Glob Chang Biol ; 27(12): 2895-2904, 2021 Jun.
Article in English | MEDLINE | ID: mdl-33779020

ABSTRACT

Rising temperature shifts plant phenology. Chinese cities, experiencing extensive expansion and intensive warming, spanning a wide latitudinal range, might provide ideal experimental opportunities for observing and predicting phenological responses to warming temperature. Using the urban-rural gradient approach, we explored urbanization imprint on land surface phenology across the entire urbanization intensity (UI) gradient ranging from 0% to 100% in 343 Chinese cities using the VIIRS Land Surface Phenology along with MODIS Land Surface Temperature (LST) products. We found prevalent advancing and delaying trends for the start of the growing season (SOS) and the end of the growing season (EOS) with increasing UI across 343 Chinese cities, respectively. Overall, the phenology shifted earlier by 8.6 ± 0.54 days for SOS, later by 1.3 ± 0.51 days for EOS, and lengthened by 9.9 ± 0.77 days for the growing season length (GSL) in urban core areas (UI above 50%) relative to their rural counterparts (UI lower than 1%). The temperature sensitivity of SOS and EOS was 10.5 ± 0.25 days earlier and 2.9 ± 0.16 days later per 1°C LST increase in spring and autumn, respectively. Moreover, the northern cities witnessed higher temperature sensitivity for SOS and EOS than the southern ones. Both spring and autumn temperature sensitivity across these 343 cities would likely decrease with future urban warming, suggesting any projections of future phenological responses to continued warming must be approached with caution.


Subject(s)
Plant Development , Urbanization , China , Cities , Climate Change , Seasons , Temperature
8.
Clin Orthop Relat Res ; 479(8): 1816-1826, 2021 08 01.
Article in English | MEDLINE | ID: mdl-33739308

ABSTRACT

BACKGROUND: In the craniocervical junction, the ligaments between the anterior foramen magnum and the anterior arch of the atlas are not well defined, and ossification of the ligaments in this region has rarely been reported. Characterizing the anatomy and ossification of these ligaments may help in the diagnosis and treatment of disorders in this region. QUESTIONS/PURPOSES: (1) What is the prevalence of an unrecognized ossification at the craniocervical junction in patients with cervical spine disorders, and what are the patient characteristics associated with this ossification? (2) Do patients with this ossification have a greater risk of ossification of other structures at the craniocervical junction or cervical spine? (3) Is there an unreported ligament at this ossified site? METHODS: We conducted a retrospective study of 578 hospitalized patients who underwent CT for cervical spine disorders between January 2016 and July 2020. Based on the inclusion criteria, 11% (66 of 578) were excluded because of a cervical or craniocervical tumor, deformity, infection, fracture or dislocation, or prior surgery, leaving 89% (512 of 578) for analysis. These 512 patients had diagnoses of cervical radiculopathy, cervical myelopathy, cervical spondylotic amyotrophy, cervical spinal cord injury without a radiographic abnormality, or axial neck pain. Their mean age was 57 years (range 22-90 years), and 60% of the patients were men. Patient characteristics including age, gender, and diagnosis were retrieved from a longitudinally maintained institutional database. CT images were used to assess the presence of a previously unrecognized ossification and ossification of other structures in the craniocervical junction and cervical spine, including the posterior longitudinal ligament, anterior longitudinal ligament, nuchal ligament, ligamentum flavum, transverse ligament, and apical ligament, as well as diffuse idiopathic skeletal hyperostosis (DISH). The association between these structures was also assessed. This unreported ossification was called the capped dens sign. It was defined and graded from 1 to 3. Grade 3 was defined as the typical capped dens sign. Cervical spine MRI was used to assess whether there was an unreported structure in the same region as where the capped dens sign was detected on CT images. In the database of a recent study, there were 33 patients younger than 41 years. Nine percent (three of 33) were excluded because they did not have cervical spine MRI. MRIs of the remaining 30 patients were assessed. Their mean age was 35 years (range 22-40 years), and 58% were men. All cervical spine CT images and MRIs were reviewed by one senior spine surgeon and one junior spine surgeon twice with a 2-week interval. Blinding was accomplished by removing identifying information from the radiographs and randomly assigning them to each examiner. Any discrepancy with respect to the grade of the capped dens sign was adjudicated by a third blinded senior spine surgeon. Intrarater and interrater reliabilities were assessed by calculating weighted kappa statistics. No ligament or membrane was reported at this site. MRI is not sensitive to identify thin tissue in this region, especially when severe degeneration has occurred. A cadaveric study was conducted to discover a potential ligament between the inferior margin of the foramen magnum and the anterior arch of the atlas, as prompted by the newly discovered ossification in the clinical analysis of this study. Six embalmed human cadaveric craniocervical regions (three male and three female cadavers; median age 56 years, range 45-78 years) were dissected by a senior anatomist and a senior anatomy technician. A mid-sagittal section of the craniocervical junction was created, allowing us to explore the interval between the anterior foramen magnum and anterior arch of the atlas. A histologic analysis was conducted in two of the six cadavers (a male cadaver, 45 years; and a female cadaver, 51 years). Slides were made with 4-µm sections and stained with hematoxylin and eosin. RESULTS: A novel capped dens sign was detected in 39% (198 of 512) of the patients and the most typical capped dens sign was detected in 19% (96 of 512) of patients. The prevalence of this sign was the highest in patients with cervical spondylotic amyotrophy (12 of 25 patients). The prevalence of ossification of the anterior longitudinal ligament, ligamentum nuchae, and apical ligament, as well as DISH, was higher in patients with a capped dens sign than in those without (p = 0.04, p < 0.001, p < 0.001, and p = 0.001, respectively). The capped dens sign was identified in 69% (18 of 26) of the patients with DISH. A thin and short band-like structure or osteophyte was detected on MRI in 87% (26 of 30), in the same region as the capped dens sign. In the cadaveric study, an unreported, distinct ligamentous structure was identified at this ossified site. It originated from the posterosuperior rim of the anterior arch of the atlas to the inferior margin of the foramen magnum, which we called the inter-atlanto-occipital ligament. It was found in all six dissected craniocervical junctions. The histologic analysis revealed dense connective tissue. CONCLUSION: More than one-third of the patients in this series demonstrated CT evidence of a previously unrecognized ossification in the craniocervical junction, which we called the capped dens sign. Anatomic evidence of this sign, which was a previously unidentified ligament, was also newly discovered in this region. This study was conducted among Asian patients and specimens. Further studies among diverse ethnic groups may be needed to generalize the results. An additional well-designed prospective study will be needed to provide further evidence regarding the potential pathophysiology and clinical relevance of the capped dens sign. Furthermore, the cadaveric analysis in this study was only a preliminary report of the ligament; further biomechanical research is needed to investigate its function. CLINICAL RELEVANCE: Knowledge of this novel ligament may improve the diagnosis and treatment of craniocervical stability and dislocation. Ossification of this ligament is correlated with age, cervical spondylotic amyotrophy, and DISH. We wonder whether patients with cervical degenerative disorders who also have a capped dens sign may be at risk for the formation of osteophytes of an uncovertebral joint, which may result in palsy of the upper limb muscles. The capped dens sign may be the craniocervical manifestation of DISH. This possible association between the capped dens sign and DISH should be considered when performing surgery on patients with the capped dens sign.


Subject(s)
Cervical Vertebrae/pathology , Ligaments, Articular/pathology , Ossification, Heterotopic/pathology , Skull/pathology , Spinal Diseases/pathology , Adult , Aged , Aged, 80 and over , Cervical Vertebrae/anatomy & histology , Databases, Factual , Female , Humans , Ligaments, Articular/anatomy & histology , Longitudinal Studies , Male , Middle Aged , Neck/anatomy & histology , Neck/pathology , Ossification, Heterotopic/epidemiology , Prevalence , Retrospective Studies , Skull/anatomy & histology , Spinal Diseases/epidemiology , Young Adult
9.
Mol Plant Microbe Interact ; 33(3): 433-443, 2020 Mar.
Article in English | MEDLINE | ID: mdl-31821091

ABSTRACT

In Arabidopsis, both pathogen invasion and benzothiadiazole (BTH) treatment activate the nonexpresser of pathogenesis-related genes 1 (NPR1)-mediated systemic acquired resistance, which provides broad-spectrum disease resistance to secondary pathogen infection. However, the BTH-induced resistance in Triticeae crops of wheat and barley seems to be accomplished through an NPR1-independent pathway. In the current investigation, we applied transcriptome analysis on barley transgenic lines overexpressing wheat wNPR1 (wNPR1-OE) and knocking down barley HvNPR1 (HvNPR1-Kd) to reveal the role of NPR1 during the BTH-induced resistance. Most of the previously designated barley chemical-induced (BCI) genes were upregulated in an NPR1-independent manner, whereas the expression levels of several pathogenesis-related (PR) genes were elevated upon BTH treatment only in wNPR1-OE. Two barley WRKY transcription factors, HvWRKY6 and HvWRKY70, were predicted and further validated as key regulators shared by the BTH-induced resistance and the NPR1-mediated acquired resistance. Wheat transgenic lines overexpressing HvWRKY6 and HvWRKY70 showed different degrees of enhanced resistance to Puccinia striiformis f. sp. tritici pathotype CYR32 and Blumeria graminis f. sp. tritici pathotype E20. In conclusion, the transcriptional changes of BTH-induced resistance in barley were initially profiled, and the identified key regulators would be valuable resources for the genetic improvement of broad-spectrum disease resistance in wheat.[Formula: see text] Copyright © 2020 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.


Subject(s)
Disease Resistance/genetics , Plant Proteins/genetics , Thiadiazoles/pharmacology , Transcription Factors/genetics , Triticum/genetics , Gene Expression Regulation, Plant , Hordeum/genetics , Plant Diseases/genetics , Plant Diseases/microbiology , Plants, Genetically Modified , Transcriptome
10.
Nanomedicine ; 29: 102263, 2020 10.
Article in English | MEDLINE | ID: mdl-32645446

ABSTRACT

Wound healing has been intensely studied to expedite recovery times and reduce scarring. However, current technologies fail to achieve regenerative capabilities, leaving wounds with scarring and lack of skin accessories. The recent emergence of nanotechnology has provided a new clinical modality of zinc nanoparticles in wound care. This present study investigated Zinc Sulfide nanoparticles (ZnS-NP) on wound healing in vitro with 2D and 3D models and in vivo with rat full-thickness wound model. ZnS-NP inhibited fetal bovine serum-stimulated rat skin fibroblast cell proliferation, altered cytoskeletal organization, and reduced collagen synthesis as well as contractile activity. ZnS-NP regulated redox homeostatsis and promoted fibroblast viability in 3D hypoxia conditions. In the rat full-thickness wound model, ZnS-NP reduced wound contraction, enhanced re-epithelization, and promoted skin appendage formation. The biological activities of ZnS-NPs determined in our current study may suggest promising practical applications for topical or systemic treatment for wound repair.


Subject(s)
Metal Nanoparticles/chemistry , Regeneration/drug effects , Skin/growth & development , Sulfides/pharmacology , Zinc Compounds/pharmacology , Animals , Cicatrix/drug therapy , Fibroblasts/drug effects , Humans , Rats , Skin/drug effects , Sulfides/chemistry , Wound Healing/drug effects , Zinc Compounds/chemistry
11.
Plant Cell Physiol ; 60(10): 2293-2306, 2019 Oct 01.
Article in English | MEDLINE | ID: mdl-31268148

ABSTRACT

ROOT UV-B SENSITIVE4 (RUS4) encodes a protein with no known function that contains a conserved Domain of Unknown Function 647 (DUF647). The DUF647-containing proteins RUS1 and RUS2 have previously been associated with root UV-B-sensing pathway that plays a major role in Arabidopsis early seedling morphogenesis and development. Here, we show that RUS4 knockdown Arabidopsis plants, referred to as amiR-RUS4, were severely reduced in male fertility with indehiscent anthers. Light microscopy of anther sections revealed a significantly reduced secondary wall thickening in the endothecium of amiR-RUS4 anthers. We further show that the transcript abundance of the NAC domain genes NAC SECONDARY WALL THICKENING PROMOTING FACTOR1 (NST1) and NST2, which have been shown to regulate the secondary cell wall thickenings in the anther endothecium, were dramatically reduced in the amiR-RUS4 floral buds. Expression of the secondary cell wall-associated MYB transcription factor genes MYB103 and MYB85 were also strongly reduced in floral buds of the amiR-RUS4 plants. Overexpression of RUS4 led to increased secondary thickening in the endothecium. However, the rus4-2 mutant exhibited no obvious phenotype. Promoter-GUS analysis revealed that the RUS4 promoter was highly active in the anthers, supporting its role in anther development. Taken together, these results suggest that RUS4, probably functions redundantly with other genes, may play an important role in the secondary thickening formation in the anther endothecium by indirectly affecting the expression of secondary cell wall biosynthetic genes.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/genetics , Membrane Proteins/metabolism , Plant Infertility/genetics , Transcription Factors/metabolism , Arabidopsis/growth & development , Arabidopsis/physiology , Arabidopsis Proteins/genetics , Cell Wall/metabolism , Flowers/genetics , Flowers/growth & development , Flowers/physiology , Gene Expression , Gene Knockdown Techniques , Genes, Reporter , Membrane Proteins/genetics , Phenotype , Plants, Genetically Modified , Promoter Regions, Genetic/genetics , Reverse Genetics , Seedlings/genetics , Seedlings/growth & development , Seedlings/physiology , Transcription Factors/genetics
12.
Glob Chang Biol ; 25(5): 1717-1732, 2019 05.
Article in English | MEDLINE | ID: mdl-30614147

ABSTRACT

Urban green spaces provide manifold environmental benefits and promote human well-being. Unfortunately, these services are largely undervalued, and the potential of urban areas themselves to mitigate future climate change has received little attention. In this study, we quantified and mapped city-wide aboveground carbon storage of urban green spaces in China's capital, Beijing, using field survey data of diameter at breast height (DBH) and tree height from 326 field survey plots, combined with satellite-derived vegetation index at a fine resolution of 6 m. We estimated the total amount of carbon stored in the urban green spaces to be 956.3 Gg (1 Gg = 109 g) in 2014. There existed great spatial heterogeneity in vegetation carbon density varying from 0 to 68.1 Mg C ha-1 , with an average density of 7.8 Mg C ha-1 . As expected, carbon density tended to decrease with urban development intensity (UDI). Likely being affected by vegetation cover proportion and configuration of green space patches, large differences were presented between the 95th and 5th quantile carbon density for each UDI bin, showing great potential for carbon sequestration. However, the interquartile range of carbon density narrowed drastically when UDI reached 60%, signifying a threshold for greatly reduced carbon sequestration potentials for higher UDI. These findings suggested that urban green spaces have great potential to make contribution to mitigating against future climate change if we plan and design urban green spaces following the trajectory of high carbon density, but we should be aware that such potential will be very limited when the urban development reaches certain intensity threshold.


Subject(s)
Carbon Sequestration , Climate Change , Ecosystem , Urbanization , Beijing , Carbon/analysis , Environment Design , Environmental Monitoring , Trees/physiology
13.
Proc Natl Acad Sci U S A ; 113(22): 6313-8, 2016 May 31.
Article in English | MEDLINE | ID: mdl-27185955

ABSTRACT

Urbanization, a dominant global demographic trend, leads to various changes in environments (e.g., atmospheric CO2 increase, urban heat island). Cities experience global change decades ahead of other systems so that they are natural laboratories for studying responses of other nonurban biological ecosystems to future global change. However, the impacts of urbanization on vegetation growth are not well understood. Here, we developed a general conceptual framework for quantifying the impacts of urbanization on vegetation growth and applied it in 32 Chinese cities. Results indicated that vegetation growth, as surrogated by satellite-observed vegetation index, decreased along urban intensity across all cities. At the same time, vegetation growth was enhanced at 85% of the places along the intensity gradient, and the relative enhancement increased with urban intensity. This growth enhancement offset about 40% of direct loss of vegetation productivity caused by replacing productive vegetated surfaces with nonproductive impervious surfaces. In light of current and previous field studies, we conclude that vegetation growth enhancement is prevalent in urban settings. Urban environments do provide ideal natural laboratories to observe biological responses to environmental changes that are difficult to mimic in manipulative experiments. However, one should be careful in extrapolating the finding to nonurban environments because urban vegetation is usually intensively managed, and attribution of the responses to diverse driving forces will be challenging but must be pursued.


Subject(s)
Cities , Environment , Plant Development , Urbanization , China , Conservation of Natural Resources , Ecosystem , Hot Temperature , Humans , Models, Theoretical
14.
Glob Chang Biol ; 24(9): 4084-4094, 2018 09.
Article in English | MEDLINE | ID: mdl-29777620

ABSTRACT

Cities are natural laboratories for studying vegetation responses to global environmental changes because of their climate, atmospheric, and biogeochemical conditions. However, few holistic studies have been conducted on the impact of urbanization on vegetation growth. We decomposed the overall impacts of urbanization on vegetation growth into direct (replacement of original land surfaces by impervious built-up) and indirect (urban environments) components, using a conceptual framework and remotely sensed data for 377 metropolitan statistical areas (MSAs) in the conterminous United States (CONUS) in 2001, 2006, and 2011. Results showed that urban pixels are often greener than expected given the amount of paved surface they contain. The vegetation growth enhancement due to indirect effects occurred in 88.4%, 90.8%, and 92.9% of urban bins in 2001, 2006, and 2011, respectively. By defining offset value as the ratio of the absolute indirect and direct impact, we obtained that growth enhancement due to indirect effects compensated for about 29.2%, 29.5%, and 31.0% of the reduced productivity due to loss of vegetated surface area on average in 2001, 2006, and 2011, respectively. Vegetation growth responses to urbanization showed little temporal variation but large regional differences with higher offset value in the western CONUS than in the eastern CONUS. Our study highlights the prevalence of vegetation growth enhancement in urban environments and the necessity of differentiating various impacts of urbanization on vegetation growth, and calls for tailored field experiments to understand the relative contributions of various driving forces to vegetation growth and predict vegetation responses to future global change using cities as harbingers.


Subject(s)
Climate Change , Environment , Plant Development , Urbanization , Cities , Climate , United States
15.
Ecol Appl ; 28(6): 1655-1668, 2018 09.
Article in English | MEDLINE | ID: mdl-29869352

ABSTRACT

Most of the planet's population currently lives in urban areas, and urban land expansion is one of the most dramatic forms of land conversion. Understanding how cities evolve temporally, spatially, and organizationally in a rapidly urbanizing world is critical for sustainable development. However, few studies have examined the coevolution of urban attributes in time and space simultaneously and the adequacy of power law scaling across cities and through time, particularly in countries that have experienced abrupt, widespread, political and economic changes. Here, we show the temporal coevolution of multiple physical, demographic, socioeconomic, and environmental attributes in individual cities, and the cross-city scaling of urban attributes at six time points (i.e., 1978, 1990, 1995, 2000, 2005, and 2010) in 32 major Chinese cities. We found that power law scaling could adequately characterize both the cross-city scaling of urban attributes across cities and the longitudinal scaling describing the temporal coevolution of urban attributes within individual cities. The cross-city scaling properties demonstrated substantial changes over time signifying evolved social and economic forces. A key finding was that the cross-city linear or superlinear scaling of urban area with population contradicts the theoretical sublinear power law scaling proposed between infrastructure and population. Furthermore, the cross-city scaling between area and population transitioned from linear to superlinear over time, and the superlinear scaling in recent times suggests decreased infrastructure efficiency. Our results demonstrate a diseconomy of scale in urban areal expansion that indicates a significant waste of land resources in the urbanization process. Future planning efforts should focus on policies that increase urban land use efficiency before continuing expansion.


Subject(s)
Urbanization , China , Cities , Spatial Analysis
16.
Proc Natl Acad Sci U S A ; 112(7): 2281-6, 2015 Feb 17.
Article in English | MEDLINE | ID: mdl-25646423

ABSTRACT

Lakes are widely distributed on the Mongolian Plateau and, as critical water sources, have sustained Mongolian pastures for hundreds of years. However, the plateau has experienced significant lake shrinkage and grassland degradation during the past several decades. To quantify the changes in all of the lakes on the plateau and the associated driving factors, we performed a satellite-based survey using multitemporal Landsat images from the 1970s to 2000s, combined with ground-based censuses. Our results document a rapid loss of lakes on the plateau in the past decades: the number of lakes with a water surface area >1 km(2) decreased from 785 in the late 1980s to 577 in 2010, with a greater rate of decrease (34.0%) in Inner Mongolia of China than in Mongolia (17.6%). This decrease has been particularly pronounced since the late 1990s in Inner Mongolia and the number of lakes >10 km(2) has declined by 30.0%. The statistical analyses suggested that in Mongolia precipitation was the dominant driver for the lake changes, and in Inner Mongolia coal mining was most important in its grassland area and irrigation was the leading factor in its cultivated area. The deterioration of lakes is expected to continue in the following decades not only because of changing climate but also increasing exploitation of underground mineral and groundwater resources on the plateau. To protect grasslands and the indigenous nomads, effective action is urgently required to save these valuable lakes from further deterioration.


Subject(s)
Lakes , Mongolia , Satellite Imagery
17.
Environ Monit Assess ; 191(1): 34, 2018 Dec 28.
Article in English | MEDLINE | ID: mdl-30593608

ABSTRACT

Urban expansion is influenced by various natural and anthropogenic factors. Understanding the driving forces of urban expansion is crucial for modeling the process of urban expansion as well as guiding urban planning and management. Here, we quantified and compared the effects of natural, socioeconomic, and neighboring factors on urban expansion and their temporal dynamics in three large cities in the Jing-Jin-Ji Urban Agglomeration: Beijing, Tianjin, and Shijiazhuang. We used remote sensing imagery from six epochs (circa 1980, 1990, 1995, 2000, 2005, and 2010) integrated with GIS techniques and analyzed using binary logistic regression. The relative importance of the three types of driving forces was further decomposed using variance partitioning. We found that the direction and/or magnitude of effects on the drivers of urban expansion varied with both epoch and city. Natural factors placed significant constraints at early stages of urban expansion, but this constraint relaxed over time. As precursor drivers of urbanization, socioeconomic factors significantly influenced urban growth in most epochs for each city. Non-urban lands near existing urban areas were more likely to be urbanized, due to easier access to existing transportation infrastructure and other facility resources. Furthermore, with urbanization, individual effects of drivers tended to be replaced by joint effects, especially for the neighboring factors. Similarities and differences in the individual and joint effects of drivers on urban expansion across cities and through time will provide valuable information for adaptive urban development strategies in the national capital region of China.


Subject(s)
Urban Renewal , Urbanization , Beijing , China , Cities , City Planning , Environmental Monitoring/methods , Humans , Socioeconomic Factors , Transportation , Urban Population
18.
Environ Sci Technol ; 49(16): 9600-9, 2015 Aug 18.
Article in English | MEDLINE | ID: mdl-26212783

ABSTRACT

The scale of urbanization in China during the past three decades is unprecedented in human history, and the processes are poorly understood. Here we present an effort to map the urban land expansion processes of 32 major cities in China from 1978 to 2010 using Landsat satellite data to understand the temporal and spatial characteristics. Results showed that the urban extent of the 32 cities expanded exponentially with very high annual rates varying from 3.2% to 12.8%. Temporal fluctuation in urban expansion rates in these 32 cities was obvious, with unexpected and alarming expansion rates from 2005 to 2010 that drastically exceeded their expectation, which was calculated from the long-term trend between 1978 and 2005, by 45%. Overall, we found that the growth rates of cities during the entire study period were inversely related to city size, contradicting the theory or Gibrat's law, which states that the growth rate is independent of city size. More detailed analysis indicated that city growth in China has transitioned from contradicting to conforming to Gibrat's law since 1995. Our study suggests that the urban expansion theory (i.e., Gibrat's law) does not fit Chinese expansion consistently over time, and the exact causes are unknown. Exploring the causes in future research will improve our understanding of the theory and, more importantly, understand the feasibility of the theoretical relationship between city size and expansion rate in guiding contemporary urban expansion planning.


Subject(s)
Urbanization , China , Cities , City Planning , Humans , Spatio-Temporal Analysis , Urbanization/trends
19.
Glob Chang Biol ; 20(7): 2240-51, 2014 Jul.
Article in English | MEDLINE | ID: mdl-24323616

ABSTRACT

Scaling is central to ecology and Earth system sciences. However, the importance of scale (i.e. resolution and extent) for understanding carbon dynamics across scales is poorly understood and quantified. We simulated carbon dynamics under a wide range of combinations of resolution (nine spatial resolutions of 250 m, 500 m, 1 km, 2 km, 5 km, 10 km, 20 km, 50 km, and 100 km) and extent (57 geospatial extents ranging from 108 to 1 247 034 km(2) ) in the southeastern United States to explore the existence of scale dependence of the simulated regional carbon balance. Results clearly show the existence of a critical threshold resolution for estimating carbon sequestration within a given extent and an error limit. Furthermore, an invariant power law scaling relationship was found between the critical resolution and the spatial extent as the critical resolution is proportional to A(n) (n is a constant, and A is the extent). Scale criticality and the power law relationship might be driven by the power law probability distributions of land surface and ecological quantities including disturbances at landscape to regional scales. The current overwhelming practices without considering scale criticality might have largely contributed to difficulties in balancing carbon budgets at regional and global scales.


Subject(s)
Carbon Sequestration , Ecosystem , Models, Theoretical , Geography , Southeastern United States , Time Factors
20.
iScience ; 27(3): 109110, 2024 Mar 15.
Article in English | MEDLINE | ID: mdl-38433922

ABSTRACT

Increasing urbanization exacerbates surface energy balance perturbations and the health risks of climate warming; however, it has not been determined whether urban-induced warming and attributions vary from local, regional, to global scale. Here, the local surface urban heat island (SUHI) is evidenced to manifest with an annual daily mean intensity of 0.99°C-1.10°C during 2003-2018 using satellite observations over 536 cities worldwide. Spatiotemporal patterns and mechanisms of SUHI tightly link with climate-vegetation conditions, with regional warming effect reaching up to 0.015°C-0.138°C (annual average) due to surface energy alterations. Globally, the SUHI footprint of 1,860 cities approximates to 1% of the terrestrial lands, about 1.8-2.9 times far beyond the urban impervious areas, suggesting the enlargements of the imprint of urban warming from local to global scales. With continuous development of urbanization, the implications for SUHI-added warming and scaling effects are considerably important on accelerating global warming.

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