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1.

Choosing a New Direction on a One-Way Street.

Zhou, Alicia Y.

Cell ; 181(2): 212-218, 2020 04 16.

Article in English | MEDLINE | ID: mdl-32302563

2.

Digital health-enabled genomics: Opportunities and challenges.

Bombard, Yvonne; Ginsburg, Geoffrey S; Sturm, Amy C; Zhou, Alicia Y; Lemke, Amy A.

Am J Hum Genet ; 109(7): 1190-1198, 2022 07 07.

Article in English | MEDLINE | ID: mdl-35803232

3.

A Randomized Trial of Two Remote Health Care Delivery Models on the Uptake of Genetic Testing and Impact on Patient-Reported Psychological Outcomes in Families With Pancreatic Cancer: The Genetic Education, Risk Assessment, and Testing (GENERATE) Study.

Rodriguez, Nicolette J; Furniss, C Sloane; Yurgelun, Matthew B; Ukaegbu, Chinedu; Constantinou, Pamela E; Fortes, Ileana; Caruso, Alyson; Schwartz, Alison N; Stopfer, Jill E; Underhill-Blazey, Meghan; Kenner, Barbara; Nelson, Scott H; Okumura, Sydney; Zhou, Alicia Y; Coffin, Tara B; Uno, Hajime; Horiguchi, Miki; Ocean, Allyson J; McAllister, Florencia; Lowy, Andrew M; Klein, Alison P; Madlensky, Lisa; Petersen, Gloria M; Garber, Judy E; Lippman, Scott M; Goggins, Michael G; Maitra, Anirban; Syngal, Sapna.

Gastroenterology ; 166(5): 872-885.e2, 2024 05.

Article in English | MEDLINE | ID: mdl-38320723

4.

Model-driven mitigation measures for reopening schools during the COVID-19 pandemic.

McGee, Ryan Seamus; Homburger, Julian R; Williams, Hannah E; Bergstrom, Carl T; Zhou, Alicia Y.

Proc Natl Acad Sci U S A ; 118(39)2021 09 28.

Article in English | MEDLINE | ID: mdl-34518375

5.

The epithelial-mesenchymal transition generates cells with properties of stem cells.

Mani, Sendurai A; Guo, Wenjun; Liao, Mai-Jing; Eaton, Elinor Ng; Ayyanan, Ayyakkannu; Zhou, Alicia Y; Brooks, Mary; Reinhard, Ferenc; Zhang, Cheng Cheng; Shipitsin, Michail; Campbell, Lauren L; Polyak, Kornelia; Brisken, Cathrin; Yang, Jing; Weinberg, Robert A.

Cell ; 133(4): 704-15, 2008 May 16.

Article in English | MEDLINE | ID: mdl-18485877

6.

Association of Genetic Variation With Cirrhosis: A Multi-Trait Genome-Wide Association and Gene-Environment Interaction Study.

Emdin, Connor A; Haas, Mary; Ajmera, Veeral; Simon, Tracey G; Homburger, Julian; Neben, Cynthia; Jiang, Lan; Wei, Wei-Qi; Feng, Qiping; Zhou, Alicia; Denny, Joshua; Corey, Kathleen; Loomba, Rohit; Kathiresan, Sekar; Khera, Amit V.

Gastroenterology ; 160(5): 1620-1633.e13, 2021 04.

Article in English | MEDLINE | ID: mdl-33310085

7.

Vision, Driving Exposure, and Collisions in Bioptic Drivers.

Zhou, Alicia M; Flom, Roanne E; Raasch, Thomas W; Segerstrom, Ellen E; Dougherty, Bradley E.

Optom Vis Sci ; 99(2): 121-126, 2022 02 01.

Article in English | MEDLINE | ID: mdl-34889860

8.

Single-cell analysis reveals a stem-cell program in human metastatic breast cancer cells.

Lawson, Devon A; Bhakta, Nirav R; Kessenbrock, Kai; Prummel, Karin D; Yu, Ying; Takai, Ken; Zhou, Alicia; Eyob, Henok; Balakrishnan, Sanjeev; Wang, Chih-Yang; Yaswen, Paul; Goga, Andrei; Werb, Zena.

Nature ; 526(7571): 131-5, 2015 Oct 01.

Article in English | MEDLINE | ID: mdl-26416748

9.

LEAP: Using machine learning to support variant classification in a clinical setting.

Lai, Carmen; Zimmer, Anjali D; O'Connor, Robert; Kim, Serra; Chan, Ray; van den Akker, Jeroen; Zhou, Alicia Y; Topper, Scott; Mishne, Gilad.

Hum Mutat ; 41(6): 1079-1090, 2020 06.

Article in English | MEDLINE | ID: mdl-32176384

10.

A machine learning model to determine the accuracy of variant calls in capture-based next generation sequencing.

van den Akker, Jeroen; Mishne, Gilad; Zimmer, Anjali D; Zhou, Alicia Y.

BMC Genomics ; 19(1): 263, 2018 Apr 17.

Article in English | MEDLINE | ID: mdl-29665779

11.

Multiple breast cancer risk variants are associated with differential transcript isoform expression in tumors.

Caswell, Jennifer L; Camarda, Roman; Zhou, Alicia Y; Huntsman, Scott; Hu, Donglei; Brenner, Steven E; Zaitlen, Noah; Goga, Andrei; Ziv, Elad.

Hum Mol Genet ; 24(25): 7421-31, 2015 Dec 20.

Article in English | MEDLINE | ID: mdl-26472073

12.

Inherited predisposition to breast and ovarian cancer in non-Jewish populations in Israel.

Zidan, Jamal; Zhou, Alicia Y; van den Akker, Jeroen; Laitman, Yael; Schayek, Hagit; Schnaider, Julia; Friedman, Eitan.

Breast Cancer Res Treat ; 166(3): 881-885, 2017 Dec.

Article in English | MEDLINE | ID: mdl-28828701

13.

Phosphorylation of the tumor suppressor CYLD by the breast cancer oncogene IKKepsilon promotes cell transformation.

Hutti, Jessica E; Shen, Rhine R; Abbott, Derek W; Zhou, Alicia Y; Sprott, Kam M; Asara, John M; Hahn, William C; Cantley, Lewis C.

Mol Cell ; 34(4): 461-72, 2009 May 14.

Article in English | MEDLINE | ID: mdl-19481526

14.

Core epithelial-to-mesenchymal transition interactome gene-expression signature is associated with claudin-low and metaplastic breast cancer subtypes.

Taube, Joseph H; Herschkowitz, Jason I; Komurov, Kakajan; Zhou, Alicia Y; Gupta, Supriya; Yang, Jing; Hartwell, Kimberly; Onder, Tamer T; Gupta, Piyush B; Evans, Kurt W; Hollier, Brett G; Ram, Prahlad T; Lander, Eric S; Rosen, Jeffrey M; Weinberg, Robert A; Mani, Sendurai A.

Proc Natl Acad Sci U S A ; 107(35): 15449-54, 2010 Aug 31.

Article in English | MEDLINE | ID: mdl-20713713

15.

Internet-Based Germline Genetic Testing for Men With Metastatic Prostate Cancer.

Cheng, Heather H; Sokolova, Alexandra O; Gulati, Roman; Bowen, Deborah; Knerr, Sarah A; Klemfuss, Nola; Grivas, Petros; Hsieh, Andrew; Lee, John K; Schweizer, Michael T; Yezefski, Todd; Zhou, Alicia; Yu, Evan Y; Nelson, Peter S; Montgomery, Bruce.

JCO Precis Oncol ; 7: e2200104, 2023 01.

Article in English | MEDLINE | ID: mdl-36623239

16.

Investigating the prevalence of pathogenic variants in Saudi Arabian patients with familial cancer using a multigene next generation sequencing panel.

AlHarbi, Musa; Mobark, Nahla Ali; AlJabarat, Wael Abdel Rahman; ElBardis, Hadeel; AlSolme, Ebtehal; Hamdan, Abdullah Bany; AlFakeeh, Ali H; AlMushawah, Fatimah; AlHarthi, Fawz; AlSharm, Abdullah A; Balbaid, Ali Abdullah O; AlJohani, Naji; Zhou, Alicia Y; Robinson, Heather A; Alqahtani, Saleh A; Abedalthagafi, Malak.

Oncotarget ; 14: 580-594, 2023 06 12.

Article in English | MEDLINE | ID: mdl-37306523

17.

Remotely Delivered Cancer Genetic Testing in the Making Genetic Testing Accessible (MAGENTA) Trial: A Randomized Clinical Trial.

Swisher, Elizabeth M; Rayes, Nadine; Bowen, Deborah; Peterson, Christine B; Norquist, Barbara M; Coffin, Tara; Gavin, Kathleen; Polinsky, Deborah; Crase, Jamie; Bakkum-Gamez, Jamie N; Blank, Stephanie V; Munsell, Mark F; Nebgen, Denise; Fleming, Gini F; Olopade, Olufunmilayo I; Law, Sherman; Zhou, Alicia; Levine, Douglas A; D'Andrea, Alan; Lu, Karen H.

JAMA Oncol ; 9(11): 1547-1555, 2023 Nov 01.

Article in English | MEDLINE | ID: mdl-37707822

18.

Clinical Implementation of Combined Monogenic and Polygenic Risk Disclosure for Coronary Artery Disease.

Maamari, Dimitri J; Brockman, Deanna G; Aragam, Krishna; Pelletier, Renée C; Folkerts, Emma; Neben, Cynthia L; Okumura, Sydney; Hull, Leland E; Philippakis, Anthony A; Natarajan, Pradeep; Ellinor, Patrick T; Ng, Kenney; Zhou, Alicia Y; Khera, Amit V; Fahed, Akl C.

JACC Adv ; 1(3)2022 Aug.

Article in English | MEDLINE | ID: mdl-36147540

19.

Predominance of antibody-resistant SARS-CoV-2 variants in vaccine breakthrough cases from the San Francisco Bay Area, California.

Servellita, Venice; Morris, Mary Kate; Sotomayor-Gonzalez, Alicia; Gliwa, Amelia S; Torres, Erika; Brazer, Noah; Zhou, Alicia; Hernandez, Katherine T; Sankaran, Madeline; Wang, Baolin; Wong, Daniel; Wang, Candace; Zhang, Yueyuan; Reyes, Kevin R; Glasner, Dustin; Deng, Xianding; Streithorst, Jessica; Miller, Steve; Frias, Edwin; Rodgers, Mary; Cloherty, Gavin; Hackett, John; Hanson, Carl; Wadford, Debra; Philip, Susan; Topper, Scott; Sachdev, Darpun; Chiu, Charles Y.

Nat Microbiol ; 7(2): 277-288, 2022 02.

Article in English | MEDLINE | ID: mdl-35013591

20.

Whole-genome sequencing as an investigational device for return of hereditary disease risk and pharmacogenomic results as part of the All of Us Research Program.

Venner, Eric; Muzny, Donna; Smith, Joshua D; Walker, Kimberly; Neben, Cynthia L; Lockwood, Christina M; Empey, Phillip E; Metcalf, Ginger A; Kachulis, Chris; Mian, Sana; Musick, Anjene; Rehm, Heidi L; Harrison, Steven; Gabriel, Stacey; Gibbs, Richard A; Nickerson, Deborah; Zhou, Alicia Y; Doheny, Kimberly; Ozenberger, Bradley; Topper, Scott E; Lennon, Niall J.

Genome Med ; 14(1): 34, 2022 03 28.

Article in English | MEDLINE | ID: mdl-35346344

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