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1.

Promoter-Intrinsic and Local Chromatin Features Determine Gene Repression in LADs.

Leemans, Christ; van der Zwalm, Marloes C H; Brueckner, Laura; Comoglio, Federico; van Schaik, Tom; Pagie, Ludo; van Arensbergen, Joris; van Steensel, Bas.

Cell ; 177(4): 852-864.e14, 2019 05 02.

Article in English | MEDLINE | ID: mdl-30982597

2.

Lamina-Associated Domains: Links with Chromosome Architecture, Heterochromatin, and Gene Repression.

van Steensel, Bas; Belmont, Andrew S.

Cell ; 169(5): 780-791, 2017 May 18.

Article in English | MEDLINE | ID: mdl-28525751

3.

The Cohesin Release Factor WAPL Restricts Chromatin Loop Extension.

Haarhuis, Judith H I; van der Weide, Robin H; Blomen, Vincent A; Yáñez-Cuna, J Omar; Amendola, Mario; van Ruiten, Marjon S; Krijger, Peter H L; Teunissen, Hans; Medema, René H; van Steensel, Bas; Brummelkamp, Thijn R; de Wit, Elzo; Rowland, Benjamin D.

Cell ; 169(4): 693-707.e14, 2017 05 04.

Article in English | MEDLINE | ID: mdl-28475897

4.

The role of transcription in shaping the spatial organization of the genome.

van Steensel, Bas; Furlong, Eileen E M.

Nat Rev Mol Cell Biol ; 20(6): 327-337, 2019 06.

Article in English | MEDLINE | ID: mdl-30886333

5.

Genome-wide maps of nuclear lamina interactions in single human cells.

Kind, Jop; Pagie, Ludo; de Vries, Sandra S; Nahidiazar, Leila; Dey, Siddharth S; Bienko, Magda; Zhan, Ye; Lajoie, Bryan; de Graaf, Carolyn A; Amendola, Mario; Fudenberg, Geoffrey; Imakaev, Maxim; Mirny, Leonid A; Jalink, Kees; Dekker, Job; van Oudenaarden, Alexander; van Steensel, Bas.

Cell ; 163(1): 134-47, 2015 Sep 24.

Article in English | MEDLINE | ID: mdl-26365489

6.

Systematic analysis of intrinsic enhancer-promoter compatibility in the mouse genome.

Martinez-Ara, Miguel; Comoglio, Federico; van Arensbergen, Joris; van Steensel, Bas.

Mol Cell ; 82(13): 2519-2531.e6, 2022 07 07.

Article in English | MEDLINE | ID: mdl-35594855

7.

Heritable transcriptional defects from aberrations of nuclear architecture.

Papathanasiou, Stamatis; Mynhier, Nikos A; Liu, Shiwei; Brunette, Gregory; Stokasimov, Ema; Jacob, Etai; Li, Lanting; Comenho, Caroline; van Steensel, Bas; Buenrostro, Jason D; Zhang, Cheng-Zhong; Pellman, David.

Nature ; 619(7968): 184-192, 2023 Jul.

Article in English | MEDLINE | ID: mdl-37286600

8.

Impact of chromatin context on Cas9-induced DNA double-strand break repair pathway balance.

Schep, Ruben; Brinkman, Eva K; Leemans, Christ; Vergara, Xabier; van der Weide, Robin H; Morris, Ben; van Schaik, Tom; Manzo, Stefano G; Peric-Hupkes, Daniel; van den Berg, Jeroen; Beijersbergen, Roderick L; Medema, René H; van Steensel, Bas.

Mol Cell ; 81(10): 2216-2230.e10, 2021 05 20.

Article in English | MEDLINE | ID: mdl-33848455

9.

Genome architecture: domain organization of interphase chromosomes.

Bickmore, Wendy A; van Steensel, Bas.

Cell ; 152(6): 1270-84, 2013 Mar 14.

Article in English | MEDLINE | ID: mdl-23498936

10.

Chromatin position effects assayed by thousands of reporters integrated in parallel.

Akhtar, Waseem; de Jong, Johann; Pindyurin, Alexey V; Pagie, Ludo; Meuleman, Wouter; de Ridder, Jeroen; Berns, Anton; Wessels, Lodewyk F A; van Lohuizen, Maarten; van Steensel, Bas.

Cell ; 154(4): 914-27, 2013 Aug 15.

Article in English | MEDLINE | ID: mdl-23953119

11.

Single-cell dynamics of genome-nuclear lamina interactions.

Kind, Jop; Pagie, Ludo; Ortabozkoyun, Havva; Boyle, Shelagh; de Vries, Sandra S; Janssen, Hans; Amendola, Mario; Nolen, Leisha D; Bickmore, Wendy A; van Steensel, Bas.

Cell ; 153(1): 178-92, 2013 Mar 28.

Article in English | MEDLINE | ID: mdl-23523135

12.

Nonlinear control of transcription through enhancer-promoter interactions.

Zuin, Jessica; Roth, Gregory; Zhan, Yinxiu; Cramard, Julie; Redolfi, Josef; Piskadlo, Ewa; Mach, Pia; Kryzhanovska, Mariya; Tihanyi, Gergely; Kohler, Hubertus; Eder, Mathias; Leemans, Christ; van Steensel, Bas; Meister, Peter; Smallwood, Sebastien; Giorgetti, Luca.

Nature ; 604(7906): 571-577, 2022 04.

Article in English | MEDLINE | ID: mdl-35418676

13.

Glucosylated hydroxymethyluracil, DNA base J, prevents transcriptional readthrough in Leishmania.

van Luenen, Henri G A M; Farris, Carol; Jan, Sabrina; Genest, Paul-Andre; Tripathi, Pankaj; Velds, Arno; Kerkhoven, Ron M; Nieuwland, Marja; Haydock, Andrew; Ramasamy, Gowthaman; Vainio, Saara; Heidebrecht, Tatjana; Perrakis, Anastassis; Pagie, Ludo; van Steensel, Bas; Myler, Peter J; Borst, Piet.

Cell ; 150(5): 909-21, 2012 Aug 31.

Article in English | MEDLINE | ID: mdl-22939620

14.

Kinetics and Fidelity of the Repair of Cas9-Induced Double-Strand DNA Breaks.

Brinkman, Eva K; Chen, Tao; de Haas, Marcel; Holland, Hanna A; Akhtar, Waseem; van Steensel, Bas.

Mol Cell ; 70(5): 801-813.e6, 2018 06 07.

Article in English | MEDLINE | ID: mdl-29804829

15.

Systematic protein location mapping reveals five principal chromatin types in Drosophila cells.

Filion, Guillaume J; van Bemmel, Joke G; Braunschweig, Ulrich; Talhout, Wendy; Kind, Jop; Ward, Lucas D; Brugman, Wim; de Castro, Inês J; Kerkhoven, Ron M; Bussemaker, Harmen J; van Steensel, Bas.

Cell ; 143(2): 212-24, 2010 Oct 15.

Article in English | MEDLINE | ID: mdl-20888037

16.

Functional Enhancer Screening in Single Cells.

van Arensbergen, Joris; van Steensel, Bas.

Mol Cell ; 66(2): 167-168, 2017 Apr 20.

Article in English | MEDLINE | ID: mdl-28431229

17.

Defining the fine structure of promoter activity on a genome-wide scale with CISSECTOR.

FitzPatrick, Vincent D; Leemans, Christ; van Arensbergen, Joris; van Steensel, Bas; Bussemaker, Harmen J.

Nucleic Acids Res ; 51(11): 5499-5511, 2023 06 23.

Article in English | MEDLINE | ID: mdl-37013986

18.

Optimisation of TP53 reporters by systematic dissection of synthetic TP53 response elements.

Trauernicht, Max; Rastogi, Chaitanya; Manzo, Stefano G; Bussemaker, Harmen J; van Steensel, Bas.

Nucleic Acids Res ; 51(18): 9690-9702, 2023 Oct 13.

Article in English | MEDLINE | ID: mdl-37650627

19.

Local rewiring of genome-nuclear lamina interactions by transcription.

Brueckner, Laura; Zhao, Peiyao A; van Schaik, Tom; Leemans, Christ; Sima, Jiao; Peric-Hupkes, Daniel; Gilbert, David M; van Steensel, Bas.

EMBO J ; 39(6): e103159, 2020 03 16.

Article in English | MEDLINE | ID: mdl-32080885

20.

Dynamic chromosomal interactions and control of heterochromatin positioning by Ki-67.

van Schaik, Tom; Manzo, Stefano G; Vouzas, Athanasios E; Liu, Ning Qing; Teunissen, Hans; de Wit, Elzo; Gilbert, David M; van Steensel, Bas.

EMBO Rep ; 23(12): e55782, 2022 12 06.

Article in English | MEDLINE | ID: mdl-36245428

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