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1.
Entropy (Basel) ; 24(2)2022 Jan 27.
Article in English | MEDLINE | ID: mdl-35205486

ABSTRACT

The vapor pressures of six solid 5-X-1,10-phenanthrolines (where X = Cl, CH3, CN, OCH3, NH2, NO2) were determined in suitable temperature ranges by Knudsen Effusion Mass Loss (KEML). From the temperature dependencies of vapor pressure, the molar sublimation enthalpies, ΔcrgHm0(⟨T⟩), were calculated at the corresponding average ⟨T⟩ of the explored temperature ranges. Since to the best of our knowledge no thermochemical data seem to be available in the literature regarding these compounds, the ΔcrgHm0(⟨T⟩) values obtained by KEML experiments were adjusted to 298.15 K using a well known empirical procedure reported in the literature. The standard (p0 = 0.1 MPa) molar sublimation enthalpies, ΔcrgHm0(298.15 K), were compared with those determined using a recently proposed solution calorimetry approach, which was validated using a remarkable amount of thermochemical data of molecular compounds. For this purpose, solution enthalpies at infinite dilution of the studied 5-chloro and 5-methylphenantrolines in benzene were measured at 298.15 K. Good agreement was found between the values derived by the two different approaches, and final mean values of ΔcrgHm0(298.15 K) were recommended. Finally, the standard molar entropies and Gibbs energies of sublimation were also derived at T = 298.15 K. The volatilities of the six compounds were found to vary over a range of three orders of magnitude in the explored temperature range. The large difference in volatility was analyzed in the light of enthalpies and entropies of sublimation. The latter was tentatively put in relation to the rotational contribution of the substituent group on the phenanthroline unit.

2.
Molecules ; 27(1)2021 Dec 21.
Article in English | MEDLINE | ID: mdl-35011256

ABSTRACT

The determination of the reliable thermodynamic properties of 2-benzoxazolinone derivatives is the main goal of this work. Some correlations are established between the energetic properties determined and the structural characteristics of the title compounds, and the reactivity of this class of compounds is also evaluated. Static-bomb combustion calorimetry and high-temperature Calvet microcalorimetry were used to determine, respectively, the standard molar enthalpies of formation in the solid state and the standard molar enthalpies of sublimation, both at T = 298.15 K. Using the results obtained for each compound, the respective gas-phase standard molar enthalpy of formation was derived. High-level quantum chemical calculations were performed to estimate the same property and the results evidence good accordance. Moreover, the gas-phase relative thermodynamic stability of 2-benzoxazolinone derivatives was also evaluated using the respective gas-phase standard molar Gibbs energy of formation. In addition, the relationship between the energetic and structural characteristics of the benzoxazolinones is presented, evidencing the enthalpic increments associated with the presence of a methyl and a nitro groups in the molecule, and this effect is compared with similar ones in other structurally related compounds.

3.
Molecules ; 26(10)2021 May 15.
Article in English | MEDLINE | ID: mdl-34063423

ABSTRACT

The Knudsen effusion method with mass spectrometric control of the vapor composition was used to study the possibility of a congruent transition to the gas phase and to estimate the enthalpy of sublimation of metal-free tetrakis(1,2,5-thiadiazolo)porphyrazine and its nickel complex (H2TTDPz and NiTTDPz, respectively). The geometrical and electronic structure of H2TTDPz and NiTTDPz in ground and low-lying excited electronic states were determined by DFT calculations. The electronic structure of NiTTDPz was studied by the complete active space (CASSCF) method, following accounting dynamic correlation by multiconfigurational quasi-degenerate second-order perturbation theory (MCQDPT2). A geometrical structure of D2h and D4h symmetry was obtained for H2TTDPz and NiTTDPz, respectively. According to data obtained by the MCQDPT2 method, the nickel complex possesses the ground state 1A1g, and the wave function of the ground state has the form of a single determinant. Electronic absorption and vibrational (IR and resonance Raman) spectra of H2TTDPz and NiTTDPz were studied experimentally and simulated theoretically.

4.
Mol Pharm ; 17(2): 666-673, 2020 02 03.
Article in English | MEDLINE | ID: mdl-31928011

ABSTRACT

Although there are a number of computational approaches available for the aqueous solubility prediction, a majority of those models rely on the existence of a training set of thermodynamic solubility measurements or/and fail to accurately account for the lattice packing contribution to the solubility. The main focus of this study is the validation of the application of a physics-based aqueous solubility approach, which does not rely on any prior knowledge and explicitly describes the solid-state contribution, in order to guide the improvement of poor solubility during the lead optimization. A superior performance of a quantum mechanical (QM)-based thermodynamic cycle approach relative to a molecular mechanical (MM)-based one in application to the optimization of two pharmaceutical series was demonstrated. The QM-based model also provided insights into the source of poor solubility of the lead compounds, allowing the selection of the optimal strategies for chemical modification and formulation. It is concluded that the application of that approach to guide solubility improvement at the late discovery and/or early development stages of the drug design proves to be highly attractive.


Subject(s)
Drug Compounding/methods , Drug Discovery/methods , Lead/chemistry , Models, Chemical , Thermodynamics , Benzodiazepines/chemistry , Biological Availability , Crystallization , Lead/pharmacokinetics , Methylurea Compounds/chemistry , Quantitative Structure-Activity Relationship , Solubility , Water/chemistry
5.
J Chem Eng Data ; 65(5): 2332-2342, 2020 May 14.
Article in English | MEDLINE | ID: mdl-32968326

ABSTRACT

Sublimation vapor pressures of nine pure perfluoroalkyl substances, including Ammonium perfluoro(2-methyl-3-oxahexanoate) (GenX), 1H,1H,2H,2H-Perfluoro-1-decanol (8:2 FTOH), 1H,1H,2H,2H-Perfluoro-1-dodecanol (10:2 FTOH) and C6 to C11 perfluorocarboxylic acids (PFCAs), were measured using the Knudsen technique at near ambient temperatures. Melting temperatures and fusion enthalpies of these compounds were also measured using differential scanning calorimetry. The vapor pressure of GenX ammonium salt is comparable to that of the much higher molecular weight perfluoroundecanoic acid. GenX ammonium salt also did not show actual melting behavior but instead decomposed at around 470 K. The measured near ambient temperature sublimation vapor pressures of the PFCAs and FTOHs were compared with some earlier reported liquid phase vapor pressures obtained at higher temperatures, and reasonable agreement exists between the data obtained in the different studies. The sublimation enthalpies of the PFCAs indicate that the contribution to the sublimation enthalpy of the CF2 group in the alkyl chain is comparable to that of the CH2 group in the corresponding non-fluorinated analogues, even though the PFCAs show consistently higher vapor pressures than do the corresponding carbon number alkanoic acids.

6.
Mol Biol (Mosk) ; 52(1): 125-135, 2018.
Article in Russian | MEDLINE | ID: mdl-29512645

ABSTRACT

One of the main problems in attempts to predict the binding constants of molecules (or free energies of their binding) is the correct evaluation of configurational binding entropy. This evaluation is possible by methods of molecular dynamics simulation, but these simulations require a lot of computational time. Earlier, we have developed an alternative approach which allows the fast calculation of the binding entropy from summarizing the available data on sublimation of crystals. Our method is based on evaluating the mean amplitude of the movements that are restricted in the bound molecule, e.g., in a crystal, but are not restricted in the free state, e.g., in vapor. In this work, it is shown that the standard entropy of binding of molecules by crystals under standard conditions (1 atm, 25°C) can be assessed rather accurately from geometric and physical parameters of the molecule and the average amplitude of the molecule motions in crystals estimated in our previous work.


Subject(s)
Entropy , Molecular Dynamics Simulation
7.
Mol Biol (Mosk) ; 50(3): 520-9, 2016.
Article in Russian | MEDLINE | ID: mdl-27414791

ABSTRACT

A simple method for evaluating a range of molecular movements in crystals has been developed. This estimate is needed to calculate the entropy of binding, in particular in protein-ligand complexes. The estimate is based on experimental data concerning the enthalpy of sublimation and saturated vapor pressure obtained for 15 organic crystals with melting temperatures of 25-80°Ð¡. For this set, we calculated the values of the average range and the corresponding average amplitude of molecular movements in crystals that constituted 0.75 ± 0.14 Å and 0.18 ± 0.03 Å, respectively. The entropy of sublimation calculated based on the average range of molecular movements in crystals was well consistent with the experimental data.


Subject(s)
Biphenyl Compounds/chemistry , Caprolactam/chemistry , Isoquinolines/chemistry , Nitrophenols/chemistry , Xylenes/chemistry , Entropy , Temperature
8.
Molecules ; 20(8): 15175-91, 2015 Aug 19.
Article in English | MEDLINE | ID: mdl-26295385

ABSTRACT

In the present work, the sublimation of crystalline solid 2-(2-nitrovinyl) furan (G-0) in the temperature range of 35 to 60 °C (below the melting point of the drug) was studied using thermogravimetric analysis (TGA). The sublimated product was characterized using Fourier-transformed-infrared spectroscopy (FT-IR) and thin layer chromatography (TLC). The sublimation rate at each temperature was obtained using the slope of the linear regression model and followed apparent zero-order kinetics. The sublimation enthalpy from 35 to 60 °C was obtained from the Eyring equation. The Gückel method was used to estimate the sublimation rate and vapor pressure at 25 °C. Physical mixtures, kneaded and freeze-dried complexes were prepared with 2-hydroxypropyl-ß-cyclodextrin (HP-ß-CD) and sulfobutyl ether-ß-cyclodextrin (SBE-ß-CD) and analyzed using isothermal TGA at 50 °C. The complexation contributed to reducing the sublimation process. The best results were achieved using freeze-dried complexes with both cyclodextrins.


Subject(s)
Cyclodextrins/chemistry , Furans/chemistry , Vapor Pressure , Vinyl Compounds/chemistry , 2-Hydroxypropyl-beta-cyclodextrin , Calorimetry, Differential Scanning , Freeze Drying , Regression Analysis , Spectroscopy, Fourier Transform Infrared , Temperature , Thermogravimetry , Time Factors , beta-Cyclodextrins/chemistry
9.
Russ J Gen Chem ; 91(10): 1932-1937, 2021.
Article in English | MEDLINE | ID: mdl-34776726

ABSTRACT

The enthalpies of sublimation of five substituted pyridine N-oxides were determined by the Knudsen effusion method with mass spectrometric control of the vapor composition within the framework of the second law of thermodynamics. The sublimation enthalpy of mono-substituted compounds 4-X-PyO depends on the nature of the substituent X and increases in the order CH3→NO2→OCH3. A difference is noted in the nature of dissociative ionization of disubstituted derivatives 2-CH3-4-NO2PyO and 3-CH3-4-NO2PyO. The relationship between the packing of molecules in crystals and the ΔH°subl values is considered.

10.
BMC Chem ; 13(1): 105, 2019 Dec.
Article in English | MEDLINE | ID: mdl-31428742

ABSTRACT

BACKGROUND: The aim of the current work was to determine thermodynamical properties of 5-(nitrophenyl)-2-furaldehyde oximes and 3-[5-(nitrolphenyl)-2-furyl]acrylic acids. RESULTS: The temperature dependences of saturated vapor pressures of 5-(nitrophenyl)-2-furaldehyde oximes and 3-[5-(nitrolphenyl)-2-furyl]acrylic acids were determined by the Knudsen effusion method. The results are presented by the Clapeyron-Clausius equation in linear form, and via this form, the standard enthalpies of sublimation of compounds were calculated at 298.15 K. The standard molar formation enthalpies of compounds in crystalline state at 298.15 K were determined indirectly from the corresponding standard molar combustion enthalpy, obtained using combustion bomb calorimetry. The non-nearest neighbour interactions (strain) in molecule were defined. The ideal-gas enthalpies of investigated compounds formation and the data available from the literature were used for calculation of group-additivity parameters and the correction terms useful in the application of the Benson correlation. CONCLUSION: Determining the thermodynamic properties for these compounds will contribute to solving practical problems pertaining to optimization processes of their synthesis, purification and application. It will also provide a more thorough insight regarding the theoretical knowledge of their nature and are necessary for the application of the Benson group-contribution correlation for calculation of Δ f H m ( 298.15 K ) o (g)calc.

11.
Spectrochim Acta A Mol Biomol Spectrosc ; 148: 223-31, 2015 Sep 05.
Article in English | MEDLINE | ID: mdl-25897715

ABSTRACT

The synthesis and characterization of four new ß-ketiminate hafnium(IV) chloride complexes dichloro-bis[4-(phenylamido)pent-3-en-2-one]-hafnium (4a), dichloro-bis[4-(4-methylphenylamido)pent-3-en-2-one]-hafnium (4b), dichloro-bis[4-(4-methoxyphenylamido)pent-3-en-2-one]-hafnium (4c), and dichloro-bis[4-(4-chlorophenylamido)pent-3-en-2-one]-hafnium (4d) are reported. All the complexes (4a-d) were characterized by spectroscopic methods ((1)H NMR, (13)C NMR, IR), and elemental analysis while the compound 4c was further examined by single-crystal X-ray diffraction, revealing that the complex is monomer with the hafnium center in octahedral coordination environment and oxygens of the chelating N-O ligands are trans to each other and the chloride ligands are in a cis arrangement. Volatile trends are established for four new ß-ketiminate hafnium(IV) chloride complexes (4a-d). Sublimation enthalpies (ΔHsub) were calculated from thermogravimetric analysis (TGA) data, which show that, the dependence of ΔHsub on the molecular weight (4a-c) and inductive effects from chlorine (4d).

12.
Chem Cent J ; 9: 67, 2015.
Article in English | MEDLINE | ID: mdl-26664456

ABSTRACT

BACKGROUND: The aim of the current work was to determine thermo dynamical properties of 5(2-nitro phenyl)-furan-2-carbaldehyde, 5(3-nitro phenyl)-furan-2-carbaldehyde and 5(4-nitro phenyl)-furan-2-carbaldehyde. RESULTS: The temperature dependence of saturated vapor pressure of 5(2-nitro phenyl)-furan-2-carbaldehyde, 5(3-nitro phenyl)-furan-2-carbaldehyde and 5(4-nitro phenyl)-furan-2-carbaldehyde was determined by Knudsen's effusion method. The results are presented by the Clapeyron-Clausius equation in linear form, and via this form, the standard enthalpies, entropies and Gibbs energies of sublimation and evaporation of compounds were calculated at 298.15 K. The standard molar formation enthalpies of compounds in crystalline state at 298.15 K were determined indirectly by the corresponding standard molar combustion enthalpy, obtained using bomb calorimetry combustion. CONCLUSIONS: Determination of the thermodynamic properties for these compounds may contribute to solving practical problems pertaining optimization processes of their synthesis, purification and application and it will also provide a more thorough insight regarding the theoretical knowledge of their nature.Graphical abstract:Generalized structural formula of investigated compounds and their formation enthalpy determination scheme in the gaseous state.

13.
Talanta ; 129: 586-93, 2014 Nov.
Article in English | MEDLINE | ID: mdl-25127637

ABSTRACT

This study aims at characterizing the vapor pressure signatures generated by triacetone triperoxide (TATP) that was synthesized without recrystallization by thermogravimmetric analysis (TGA) for exploitation by standoff detection technologies of explosive devices. The thermal behavior of the nonrecrystallized sample was compared with reported values. Any phase change, melting point and decomposition identification were studied by differential scanning calorimeter. Vapor pressures were estimated by the Langmuir method of evaporation from an open surface in a vacuum. Vapor pressures of TATP at different temperatures were calculated using the linear logarithmic relationship obtained from benzoic acid reference standard. Sublimation of TATP was found to follow apparent zero-order kinetics and sublimes at steady rates at 298 K and above. While the enthalpy of sublimation found, 71.7 kJ mol(-1), is in agreement with reported values the vapor pressures deviated significantly. The differences in the vapor pressures behavior are attributable to the synthesis pathway chosen in this study.

14.
J Res Natl Bur Stand A Phys Chem ; 72A(1): 75-80, 1968.
Article in English | MEDLINE | ID: mdl-31824077

ABSTRACT

Mass spectrometric studies were made at high temperatures of the vapors over BeF2(s) and BeO(s) individually and of their mixture. The sublimation enthalpy, ΔH 0 ° = 55.56 ± 0.43 kcal/mol , where 1 kcal equals 4184 J, was obtained for BeF2 by the use of a log I+T versus 1/T plot. A complex molecule appeared in the BeF2-BeO system at high temperatures which, on the basis of its m/e position, corresponded to Be2OF2. For the reaction, BeO(s) + BeF2(g) = Be2OF2(g), a second law treatment of the data gave an enthalpy value, Δ H 0 ° = 41.56 ± 1.8 kcal/mol . The data, combined with free energy functions, resulted in a mean reaction enthalpy, Δ H 0 ° = 42.6 kcal/mol . The heat of formation for Be2OF2(g), Δ H 0 ° = - 288.3 kcal/mol , was computed using the reaction enthalpy based on the second law.

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