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1.
Ann Surg ; 274(3): 481-490, 2021 09 01.
Article in English | MEDLINE | ID: mdl-34183517

ABSTRACT

INTRODUCTION: Identification of residual disease after neuroendocrine tumor (NET) resection is critical for management. Post-surgery imaging is insensitive, expensive, and current biomarkers ineffective. We evaluated whether the NETest, a multigene liquid biopsy blood biomarker, correlated with surgical resection and could predict recurrence. METHODS: Multicenter evaluation of NET resections over 24 months (n = 103): 47 pancreas, 26 small bowel, 26 lung, 2 appendix, 1 duodenum, 1 stomach. Surgery: R0 (83), R1/R2 (20). One millilitre of blood was collected at D0 and posroperative day (POD) 30. Transcript quantification by polymerase chain reaction (normal: ≤20), CgA by NEOLISA (normal ≤108 ng/mL). Standard-of-care (SoC) follow-up costs were calculated and compared to POD30 NETest-stratification approach. Analyses: Wilcoxon-paired test, Chi-square test. D BIOMARKERS: NETest: 103 of 103 (100%)-positive, whereas 23 of 103 (22%) were CgA-positive (Chi-square = 78, P < 0.0001).In the R0 group, the NETest decreased 59 ± 28 to 26 ± 23 (P < 0.0001); 36% (30/83) remained elevated. No significant decrease was evident for CgA. In the R1/R2 group the NETest decreased but 100% remained elevated. CgA levels did not decrease.An elevated POD30 NETest was present in R0 and 25 (83%) developed radiological recurrences. Normal score R0 s (n = 53) did not develop recurrence (Chi-square = 56, P < 0.0001). Recurrence prediction was 94% accurate with the NETest. COST EVALUATION: Using the NETest to stratify postoperative imaging resulted in a cost-savings of 42%. CONCLUSION: NETest diagnosis is more accurate than CgA (100% vs 22%). Surgery significantly decreased NETest. An elevated POD30 NETest predicted recurrence with 94% accuracy and post-surgical POD30 NETest follow-up stratification decreased costs by 42%. CgA had no surgical utility. Further studies would define the accuracy and cost-effectiveness of the NETest in the detection of postoperative recurrent disease.


Subject(s)
Biomarkers, Tumor/blood , Liquid Biopsy/instrumentation , Neoplasm Recurrence, Local/diagnosis , Neuroendocrine Tumors/surgery , Adult , Aged , Aged, 80 and over , Biomarkers, Tumor/genetics , Cost-Benefit Analysis , Disease Progression , Female , Genomics/economics , Genomics/methods , Humans , Liquid Biopsy/economics , Male , Middle Aged , Neoplasm Recurrence, Local/genetics , Neoplasm, Residual/diagnosis , Neoplasm, Residual/genetics , Neuroendocrine Tumors/genetics , Predictive Value of Tests , Prognosis , Prospective Studies , RNA, Messenger/blood , Reagent Kits, Diagnostic/economics , Sensitivity and Specificity
2.
Oncologist ; 24(6): 783-790, 2019 06.
Article in English | MEDLINE | ID: mdl-30158287

ABSTRACT

BACKGROUND: The clinical relevance of molecular biomarkers in oncology management has been recognized in breast and lung cancers. We evaluated a blood-based multigene assay for management of neuroendocrine tumors (NETs) in a real-world study (U.S. registry NCT02270567). Diagnostic accuracy and relationship to clinical disease status in two cohorts (treated and watch-and-wait) were evaluated. MATERIALS AND METHODS: Patients with NETs (n = 100) were followed for 6-12 months. Patients' primary tumors were gastroenteropancreatic (68%), lung 20%, and of unknown origin (12%). Characteristics included well-differentiated, low-grade tumors (97%), stage IV disease (96%); treatment with surgery (70%); and drug treatment (56%). NETest was measured at each visit and disease status determined by RECIST. Scores categorized as low (NETest 14%-40%) or high (≥80%) defined disease as stable or progressive. Multivariate analyses determined the strength of the association with progression-free survival (PFS). RESULTS: NETest diagnostic accuracy was 96% and concordant (95%) with image-demonstrable disease. Scores were reproducible (97%) and concordant with clinical status (98%). The NETest was the only feature linked to PFS (odds ratio, 6.1; p < .0001). High NETest correlated with progressive disease (81%; median PFS, 6 months), and low NETest correlated with stable disease (87%; median PFS, not reached). In the watch-and-wait cohort, low NETest was concordant with stable disease in 100% of patients, and high NETest was associated with management changes in 83% of patients. In the treated cohort, all low NETest patients (100%) remained stable. A high NETest was linked to intervention and treatment stabilization (100%). Use of NETest was associated with reduced imaging (biannual to annual) in 36%-38% of patients. CONCLUSION: Blood NETest is an accurate diagnostic and can be of use in monitoring disease status and facilitating management change in both watch-and-wait and treatment cohorts. IMPLICATIONS FOR PRACTICE: A circulating multigene molecular biomarker to guide neuroendocrine tumor (NET) management has been developed because current biomarkers have limited clinical utility. NETest is diagnostic (96%) and in real time defines the disease status (>95%) as stable or progressive. It is >90% effective in guiding treatment decisions in conjunction with diagnostic imaging. Monitoring was effective in watch-and-wait or treatment groups. Low levels supported no management change and reduced the need for imaging. High levels indicated the need for management intervention. Real-time liquid biopsy assessment of NETs has clinical utility and can contribute additional value to patient management strategies and outcomes.


Subject(s)
Biomarkers, Tumor/blood , Clinical Decision-Making/methods , Neuroendocrine Tumors/diagnosis , Reagent Kits, Diagnostic , Adult , Aged , Aged, 80 and over , Disease Progression , Female , Humans , Kaplan-Meier Estimate , Liquid Biopsy/instrumentation , Male , Middle Aged , Neoplasm Staging , Neuroendocrine Tumors/blood , Neuroendocrine Tumors/mortality , Neuroendocrine Tumors/therapy , Prognosis , Registries/statistics & numerical data , Watchful Waiting , Young Adult
3.
J Clin Lab Anal ; 33(2): e22670, 2019 Feb.
Article in English | MEDLINE | ID: mdl-30191594

ABSTRACT

BACKGROUND: The ratio of target cfDNA in total plasma is low. The abundant gDNA background resulting from blood cell lysis caused by improper operation has become a major obstacle to accurately measure cfDNA. In this study, we investigated the storage capacity of three blood cell collection tubes (BCTs) in the prevention of genomic DNA contamination caused by white blood cell rupture and evaluated their performance when they were utilized combining with highly sensitive mutation detection technology. METHODS: Blood samples were drawn from six healthy blood donors and stored in three types of BCTs (BD K2 -EDTA tube, Roche tube, and Streck tube). Plasma samples were isolated at specific time points (day 0, day 3, day 7, and day 14) for content analysis. RESULTS: Roche BCT was more capable for preventing cfDNA contamination caused by white blood cell disruption within 14 days, comparing with BD K2 -EDTA tube and Streck tube. Severe white blood cell lysis and gDNA contamination were found in the BD tube. The impacts of Roche and Streck tubes on the quantity and complexity of next-generation sequencing (NGS) libraries did not differ significantly within 3 days, satisfying most of our daily demands. In addition, the rupture of WBC was not synchronized with hemolysis in BCTs. CONCLUSION: This study showed that capacities of blood collection tubes differed considerably in preservation of blood samples. Therefore, suitable blood collection devices should be selected to minimize gDNA contamination and to standardize blood samples processing for achieving more accurate and reliable clinical analysis of cfDNA.


Subject(s)
Blood Specimen Collection/instrumentation , Blood Specimen Collection/standards , Cell-Free Nucleic Acids/blood , Liquid Biopsy/instrumentation , Liquid Biopsy/standards , Hemolysis , Humans , Leukocytes/chemistry , Leukocytes/cytology , Neoplasms/diagnosis
4.
Nano Lett ; 18(12): 7642-7650, 2018 12 12.
Article in English | MEDLINE | ID: mdl-30421614

ABSTRACT

The-state-of-the-art bio- and nanotechnology have opened up an avenue to noninvasive liquid biopsy for identifying diseases from biomolecules in bloodstream, especially DNA. In this work, we combined sequence-specific-labeling scheme using mutated clustered regularly interspaced short palindromic repeats associated protein 9 without endonuclease activity (CRISPR/dCas9) and ion concentration polarization (ICP) phenomenon as a mechanism to selectively preconcentrate targeted DNA molecules for rapid and direct detection. Theoretical analysis on ICP phenomenon figured out a critical mobility, elucidating two distinguishable concentrating behaviors near a nanojunction, a stacking and a propagating behavior. Through the modulation of the critical mobility to shift those behaviors, the C-C chemokine receptor type 5 ( CCR5) sequences were optically detected without PCR amplification. Conclusively, the proposed dCas9-mediated genetic detection methodology based on ICP would provide rapid and accurate micro/nanofluidic platform of liquid biopsies for disease diagnostics.


Subject(s)
CRISPR-Associated Protein 9/chemistry , DNA/analysis , Lab-On-A-Chip Devices , Liquid Biopsy/instrumentation , CRISPR-Associated Protein 9/genetics , Clustered Regularly Interspaced Short Palindromic Repeats , DNA/genetics , DNA/isolation & purification , Equipment Design , Humans , Mutation , Receptors, CCR5/genetics
5.
Zhonghua Zhong Liu Za Zhi ; 41(5): 326-330, 2019 May 23.
Article in Zh | MEDLINE | ID: mdl-31137164

ABSTRACT

Objective: To explore the feasibility of bronchoscopic brushing liquid-based slide cytology combined with automatic immunocytochemistry (ICC) for pathological typing of lung cancer. Methods: A liquid-based thin-prep was prepared from 171 bronchoscopic brushing specimens of patients with pulmonary lesions. ICC was detected by automatic immunohistochemistry instrument while cytomorphological diagnosis was made. The results were compared with those of histopathological diagnosis. Results: Among 171 patients, 130 (76.0%) could be classified by cell morphology alone, including 31 squamous cell carcinomas, 44 adenocarcinomas and 55 small cell carcinomas; 162 (94.7%) could be classified by cell morphology combined with ICC, including 38 squamous cell carcinomas, 61 adenocarcinomas and 63 small cell carcinomas (P<0.001). According to the gold standard of histopathological diagnosis, the coincidence rate of cytomorphology combined with ICC was higher than that of cell morphology alone. The coincidence rate of squamous cell carcinoma was increased from 85.2% to 97.1% (P=0.093), adenocarcinoma from 92.5% to 98.0% (P<0.001), and small cell carcinoma from 96.1% to 98.3% (P=0.465). Conclusion: The combination of liquid-based thin-prep cytology and automatic immunohistochemistry can effectively improve the accuracy of pathological typing of brushing specimens under fiberoptic bronchoscopy, and provide more objective diagnostic results for clinical treatment.


Subject(s)
Adenocarcinoma/pathology , Carcinoma, Squamous Cell/pathology , Immunohistochemistry/methods , Liquid Biopsy/methods , Lung Neoplasms/pathology , Small Cell Lung Carcinoma/pathology , Bronchoscopy/instrumentation , Bronchoscopy/methods , Cytodiagnosis/instrumentation , Cytodiagnosis/methods , Feasibility Studies , Humans , Liquid Biopsy/instrumentation , Lung Neoplasms/classification
6.
Gastrointest Endosc ; 86(6): 1152-1156.e2, 2017 Dec.
Article in English | MEDLINE | ID: mdl-28259593

ABSTRACT

BACKGROUND AND AIMS: Duodenal collections of pancreatic fluid can be used as a source of mutations and other markers of pancreatic ductal neoplasia, but admixing pancreatic juice with duodenal contents lowers the concentrations of mutations. Collecting pancreatic fluid directly from the ampulla could yield a purer sample of pancreatic fluid. METHODS: We used an endoscopic distal cap attachment to "cap" the ampulla and collect secretin-stimulated pancreatic fluid samples for 5 minutes from 81 patients undergoing pancreatic evaluation as part of the Cancer of the Pancreas Screening studies. We compared mutation concentrations (K-ras and GNAS) measured by droplet-digital PCR (ddPCR) in "cap-collected juice" samples to those found in juice samples obtained from 77 patients collected by aspiration from the duodenal lumen without capping the ampulla. RESULTS: Among all subjects, mutation concentrations were higher in pancreatic juice samples collected using the endoscopic cap method (median, .028%; IQR, 0-.077) compared with the noncap-collected (median, .019%; IQR, 0-.044; P = .055). Among pancreatic juice samples with detectable mutations, mutation concentrations were higher in the cap-collected juice samples than in those collected without the cap (.055%; IQR, .026-.092 vs .032%; IQR, .020-.066; P = .031). CONCLUSIONS: Collecting pancreatic juice directly from the ampulla using an endoscopic distal cap yields higher concentrations of pancreatic fluid mutations.


Subject(s)
Endoscopy, Gastrointestinal/instrumentation , Pancreatic Juice , Pancreatic Neoplasms/diagnosis , Pancreatic Neoplasms/genetics , Aged , Ampulla of Vater , Chromogranins/genetics , Female , GTP-Binding Protein alpha Subunits, Gs/genetics , Humans , Liquid Biopsy/instrumentation , Male , Middle Aged , Mutation , Pancreas/pathology , Proto-Oncogene Proteins p21(ras)/genetics , Secretin/administration & dosage
7.
Anal Chem ; 88(24): 12339-12345, 2016 12 20.
Article in English | MEDLINE | ID: mdl-28193070

ABSTRACT

Autoantibodies raised against tumor-associated antigens have shown high promise as clinical biomarkers for reliable diagnosis, prognosis, and therapy monitoring of cancer. An electrochemical disposable biosensor for the specific and sensitive determination of p53-specific autoantibodies has been developed for the first time in this work. This biosensor involves the use of magnetic microcarriers (MBs) modified with covalently immobilized HaloTag fusion p53 protein as solid supports for the selective capture of specific autoantibodies. After magnetic capture of the modified MBs onto screen-printed carbon working electrodes, the amperometric signal using the system hydroquinone/H2O2 was related to the levels of p53-autoantibodies in the sample. The biosensor was applied for the analysis of sera from 24 patients with high-risk of developing colorectal cancer and 6 from patients already diagnosed with colorectal (4) and ovarian (2) cancer. The developed biosensor was able to determine p53 autoantibodies with a sensitivity higher than that of a commercial standard ELISA using a just-in-time produced protein in a simpler protocol with less sample volume and easily miniaturized and cost-effective instrumentation.


Subject(s)
Autoantibodies/blood , Autoantibodies/immunology , Biosensing Techniques/methods , Neoplasms/blood , Neoplasms/immunology , Tumor Suppressor Protein p53/immunology , Biosensing Techniques/instrumentation , Colorectal Neoplasms/blood , Colorectal Neoplasms/immunology , Electrochemical Techniques/instrumentation , Electrochemical Techniques/methods , Equipment Design , Female , Humans , Immobilized Proteins/chemistry , Immobilized Proteins/immunology , Immunity, Humoral , Limit of Detection , Liquid Biopsy/instrumentation , Liquid Biopsy/methods , Models, Molecular , Ovarian Neoplasms/blood , Ovarian Neoplasms/immunology , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/immunology , Tumor Suppressor Protein p53/chemistry
8.
Anal Bioanal Chem ; 408(26): 7255-64, 2016 Oct.
Article in English | MEDLINE | ID: mdl-27497966

ABSTRACT

The detection of cancer biomarkers freely circulating in blood offers new opportunities for cancer early diagnosis, patient follow-up, and therapy efficacy assessment based on liquid biopsy. In particular, circulating cell-free nucleic acids released from tumor cells have recently attracted great attention also because they become detectable in blood before the appearance of other circulating biomarkers, such as circulating tumor cells. The detection of circulating nucleic acids poses several technical challenges that arise from their low concentration and relatively small size. Here, possibilities offered by innovative biosensing approaches for the detection of circulating DNA in peripheral blood and blood-derived products such as plasma and serum blood are discussed. Different transduction principles are used to detect circulating DNAs and great advantages are derived from the combined use of nanostructured materials.


Subject(s)
Biosensing Techniques/methods , Cell-Free Nucleic Acids/blood , Neoplasms/blood , Animals , Biosensing Techniques/instrumentation , Electrochemical Techniques/instrumentation , Electrochemical Techniques/methods , Equipment Design , Humans , Liquid Biopsy/instrumentation , Liquid Biopsy/methods , Neoplasms/diagnosis
9.
Biosens Bioelectron ; 259: 116382, 2024 Sep 01.
Article in English | MEDLINE | ID: mdl-38749284

ABSTRACT

Small extracellular vesicles (sEVs) reflect the genotype and phenotype of original cells and are biomarkers for early diagnosis and treatment monitoring of tumors. Yet, their small size and low density make them difficult to isolate and detect in body fluid samples. This study proposes a novel acDEP-Exo chip filled with transparent micro-beads, which formed a non-uniform electrical field, and finally achieved rapid, sensitive, and tunable sEVs capture and detection. The method requires only 20-50 µL of sample, achieved a limit of detection (LOD) of 161 particles/µL, and can detect biomarkers within 13 min. We applied the chip to analyze the two markers of sEV's EpCAM and MUC1 in clinical plasma samples from breast cancer (BC) patients and healthy volunteers and found that the combined evaluation of sEV's biomarkers has extremely high sensitivity, specificity and accuracy. The present study introduces an alternative approach to sEVs isolation and detection, has a great potential in real-time sEVs-based liquid biopsy.


Subject(s)
Biomarkers, Tumor , Biosensing Techniques , Breast Neoplasms , Epithelial Cell Adhesion Molecule , Extracellular Vesicles , Lab-On-A-Chip Devices , Mucin-1 , Humans , Breast Neoplasms/diagnosis , Breast Neoplasms/blood , Extracellular Vesicles/chemistry , Female , Biosensing Techniques/instrumentation , Biosensing Techniques/methods , Mucin-1/blood , Mucin-1/analysis , Biomarkers, Tumor/blood , Biomarkers, Tumor/isolation & purification , Limit of Detection , Equipment Design , Electrophoresis/instrumentation , Microfluidic Analytical Techniques/instrumentation , Liquid Biopsy/methods , Liquid Biopsy/instrumentation
10.
Sci Rep ; 10(1): 20312, 2020 11 20.
Article in English | MEDLINE | ID: mdl-33219265

ABSTRACT

Diagnostic leukapheresis (DLA) enables to sample larger blood volumes and increases the detection of circulating tumor cells (CTC) significantly. Nevertheless, the high excess of white blood cells (WBC) of DLA products remains a major challenge for further downstream CTC enrichment and detection. To address this problem, we tested the performance of two label-free CTC technologies for processing DLA products. For the testing purposes, we established ficollized buffy coats (BC) with a WBC composition similar to patient-derived DLA products. The mimicking-DLA samples (with up to 400 × 106 WBCs) were spiked with three different tumor cell lines and processed with two versions of a spiral microfluidic chip for label-free CTC enrichment: the commercially available ClearCell FR1 biochip and a customized DLA biochip based on a similar enrichment principle, but designed for higher throughput of cells. While the samples processed with FR1 chip displayed with increasing cell load significantly higher WBC backgrounds and decreasing cell recovery, the recovery rates of the customized DLA chip were stable, even if challenged with up to 400 × 106 WBCs (corresponding to around 120 mL peripheral blood or 10% of a DLA product). These results indicate that the further up-scalable DLA biochip has potential to process complete DLA products from 2.5 L of peripheral blood in an affordable way to enable high-volume CTC-based liquid biopsies.


Subject(s)
Lab-On-A-Chip Devices , Leukapheresis/instrumentation , Neoplasms/diagnosis , Neoplastic Cells, Circulating , Blood Buffy Coat/cytology , Cell Line, Tumor , Humans , Liquid Biopsy/instrumentation , Liquid Biopsy/methods , Neoplasms/blood
11.
Int J Lab Hematol ; 42(5): 544-551, 2020 Oct.
Article in English | MEDLINE | ID: mdl-32163671

ABSTRACT

INTRODUCTION: The presence of high fluorescent cells (HF-BF) on the Sysmex XN-1000 hematology analyzers has gained interest regarding the prediction of malignant cells in body fluids, but lacks sensitivity. We aimed to increase this sensitivity by combining HF-BF value, automated results, and clinical information. METHODS: We evaluated a new workflow for the management of body fluids in the hematology laboratory, including the HF-BF criterion and clinical information. In two laboratories, 1623 serous fluids were retrospectively analyzed on the XN-1000 BF mode. All samples were morphologically screened for malignant cells. Optimal HF-BF cutoffs were determined to predict their presence. Thereafter, the added value of clinical information was evaluated. Other reflex testing rules (eosinophilic count >5% and presence of the WBC Abnormal Scattergram flag) were also used to refine our workflow. RESULTS: Optimal HF-BF cutoffs in the two hematology centers were 108 and 45 cells/µL, yielding a sensitivity/specificity of 66.7/93.6% and 86.8/66.6% for malignant cell detection. When adding clinical information, sensitivity/specificity evolved to 100.0/68.9% and 100.0%/not determined. Of 104 samples containing malignant cells, 97 had positive clinical information; the remainder had a HF-BF > cutoff. CONCLUSION: Combining clinical information and HF-BF reached 100% sensitivity for malignant cell detection in body fluid analysis. Lack of robustness of the optimal HF-BF cutoff deserves the use of local cutoffs. Rapid automated results reporting from the XN-1000 BF mode are also feasible in clinical practice. Prospective evaluation of the workflow is needed before its implementation in clinical practice.


Subject(s)
Cytodiagnosis/instrumentation , Cytodiagnosis/methods , Liquid Biopsy/instrumentation , Liquid Biopsy/methods , Neoplasms/diagnosis , Neoplastic Cells, Circulating/pathology , Body Fluids , Cytodiagnosis/standards , Humans , Liquid Biopsy/standards , ROC Curve , Retrospective Studies , Sensitivity and Specificity , Workflow
12.
ACS Appl Mater Interfaces ; 12(5): 5671-5679, 2020 Feb 05.
Article in English | MEDLINE | ID: mdl-31940177

ABSTRACT

Dynamically monitoring the clonal evolution of lung cancer and performing molecular analyses on tumor cells are challenging but necessary tasks to adjust therapeutic interventions and evaluate treatment efficacy. Circulating tumor cells (CTCs), as a "liquid biopsy", may offer an auxiliary tool to identify phenotypic transformation of solid tumors at primary or metastatic sites and uncover their corresponding molecular variation. Herein, we developed an aptamer-modified PEG-PLGA-nanofiber (PPN) microfluidic system optimized for recognizing rare CTC subtypes in lung cancer patients. This unique purification system can be adopted to monitor the clonal evolution of solid tumors by following the intrinsic immunophenotypes of CTCs, while significantly enhancing capture efficiency for polyclonal-derived tumor cells, further facilitating therapeutic evaluation via dynamic CTC enumeration. Combining with downstream single-cell sequencing, the aptamer-modified-PPN microfluidic system was able to provide early insight into tumor heterogeneity and predict histologic transformation in advance, broadening its clinical applications in lung cancer patients.


Subject(s)
Aptamers, Nucleotide/genetics , Clonal Evolution/genetics , Lung Neoplasms , Nanofibers/chemistry , Neoplastic Cells, Circulating/pathology , Animals , Cell Line, Tumor , Humans , Liquid Biopsy/instrumentation , Liquid Biopsy/methods , Lung Neoplasms/genetics , Lung Neoplasms/pathology , Mice , Microfluidic Analytical Techniques/instrumentation , Microfluidic Analytical Techniques/methods , Polyesters/chemistry , Polyethylene Glycols/chemistry , Xenograft Model Antitumor Assays
13.
Cancer Med ; 9(1): 290-301, 2020 01.
Article in English | MEDLINE | ID: mdl-31709750

ABSTRACT

BACKGROUND: Early detection of urothelial carcinoma (UC) by noninvasive diagnostic methods with high accuracy is still underscored. This study aimed to develop a noninvasive assay incorporating both enrichment of urine exfoliated cells and immunoassays for UC detection. METHODS: Polystyrene dishes were exposed to oxygen plasma and modified with 3-aminopropyltriethoxysilane to prepare amine-functionalized nanostructured substrates (NS). Performance characterization of NS was evaluated by atomic force microscope and X-ray photoelectron spectroscopy. Urine exfoliated cells were captured by NS and then immunostained to detect urinary tumor cells (UTCs), which was called UTC assay. The receiver operating characteristic (ROC) curve, area under ROC curve (AUC), and Youden index were used to find the cutoff value of UTC assay. ROC analysis and McNemar test were used to compare the diagnostic accuracy of UTC assay with cytology. Kappa test was used to analyze the agreement of UTC assay and cytology with pathological diagnosis. RESULTS: Nanostructured substrates had good cell binding yields of nucleated cells and tumor cells. CK20+ CD45- CD11b- cells were considered as UTCs. UTC number ≥ 1 per sample could be considered as a positive result. By AUC and Kappa analysis, UTC assay showed good performance in UC detection. McNemar test demonstrated that UTC assay had a superior sensitivity even in low-grade subgroup and a similar specificity compared to cytology in UC diagnosis. CONCLUSIONS: Nanostructured substrates could be used to enrich the exfoliated cells from urine samples. UTC assay with NS has the potential to play a role in UC detection. The value of this assay still needs additional validation by large, multi-center studies.


Subject(s)
Carcinoma, Transitional Cell/diagnosis , Early Detection of Cancer/methods , Urologic Neoplasms/diagnosis , Urothelium/pathology , Adult , Aged , Aged, 80 and over , Biomarkers, Tumor/analysis , Biomarkers, Tumor/immunology , Carcinoma, Transitional Cell/urine , Cell Line, Tumor , Cell Separation/instrumentation , Cell Separation/methods , Early Detection of Cancer/instrumentation , Feasibility Studies , Female , Humans , Immunoassay/methods , Liquid Biopsy/instrumentation , Liquid Biopsy/methods , Male , Microscopy, Atomic Force , Middle Aged , Nanostructures , ROC Curve , Urine/cytology , Urologic Neoplasms/urine , Urothelium/cytology
14.
Mol Oncol ; 14(5): 1001-1015, 2020 05.
Article in English | MEDLINE | ID: mdl-32246814

ABSTRACT

The combination of liquid biomarkers from a single blood tube can provide more comprehensive information on tumor development and progression in cancer patients compared to single analysis. Here, we evaluated whether a combined analysis of circulating tumor cells (CTCs), circulating tumor DNA (ctDNA), and circulating cell-free microRNA (miRNA) in total plasma and extracellular vesicles (EV) from the same blood sample is feasible and how the results are influenced by the choice of different blood tubes. Peripheral blood from 20 stage IV melanoma patients and five healthy donors (HD) was collected in EDTA, Streck, and Transfix tubes. Peripheral blood mononuclear cell fraction was used for CTC analysis, whereas plasma and EV fractions were used for ctDNA mutation and miRNA analysis. Mutations in cell-free circulating DNA were detected in 67% of patients, with no significant difference between the tubes. CTC was detected in only EDTA blood and only in 15% of patients. miRNA NGS (next-generation sequencing) results were highly influenced by the collection tubes and could only be performed from EDTA and Streck tubes due to hemolysis in Transfix tubes. No overlap of significantly differentially expressed miRNA (patients versus HD) could be found between the tubes in total plasma, whereas eight miRNA were commonly differentially regulated in the EV fraction. In summary, high-quality CTCs, ctDNA, and miRNA data from a single blood tube can be obtained. However, the choice of blood collection tubes is a critical pre-analytical variable.


Subject(s)
Circulating Tumor DNA/blood , Liquid Biopsy/instrumentation , Liquid Biopsy/methods , Melanoma/blood , MicroRNAs/blood , Aged , Biomarkers, Tumor/blood , Biomarkers, Tumor/genetics , Cell Line, Tumor , Extracellular Vesicles/genetics , Extracellular Vesicles/metabolism , Extracellular Vesicles/ultrastructure , Female , High-Throughput Nucleotide Sequencing , Humans , Male , Melanoma/pathology , MicroRNAs/genetics , Microscopy, Electron, Transmission , Mutation , Neoplasm Staging , Neoplastic Cells, Circulating/metabolism
15.
Nat Commun ; 11(1): 4489, 2020 09 07.
Article in English | MEDLINE | ID: mdl-32895384

ABSTRACT

We report a covalent chemistry-based hepatocellular carcinoma (HCC)-specific extracellular vesicle (EV) purification system for early detection of HCC by performing digital scoring on the purified EVs. Earlier detection of HCC creates more opportunities for curative therapeutic interventions. EVs are present in circulation at relatively early stages of disease, providing potential opportunities for HCC early detection. We develop an HCC EV purification system (i.e., EV Click Chips) by synergistically integrating covalent chemistry-mediated EV capture/release, multimarker antibody cocktails, nanostructured substrates, and microfluidic chaotic mixers. We then explore the translational potential of EV Click Chips using 158 plasma samples of HCC patients and control cohorts. The purified HCC EVs are subjected to reverse-transcription droplet digital PCR for quantification of 10 HCC-specific mRNA markers and computation of digital scoring. The HCC EV-derived molecular signatures exhibit great potential for noninvasive early detection of HCC from at-risk cirrhotic patients with an area under receiver operator characteristic curve of 0.93 (95% CI, 0.86 to 1.00; sensitivity = 94.4%, specificity = 88.5%).


Subject(s)
Biomarkers, Tumor/isolation & purification , Carcinoma, Hepatocellular/diagnosis , Early Detection of Cancer/methods , Extracellular Vesicles/genetics , Liver Neoplasms/diagnosis , Aged , Biomarkers, Tumor/genetics , Carcinoma, Hepatocellular/blood , Carcinoma, Hepatocellular/genetics , Carcinoma, Hepatocellular/pathology , Case-Control Studies , Click Chemistry/instrumentation , Click Chemistry/methods , Computational Chemistry , Computer Simulation , Diagnosis, Differential , Dimethylpolysiloxanes/chemistry , Disease Progression , Early Detection of Cancer/instrumentation , Female , Hep G2 Cells , Humans , Lab-On-A-Chip Devices , Liquid Biopsy/instrumentation , Liquid Biopsy/methods , Liver Cirrhosis/blood , Liver Cirrhosis/pathology , Liver Neoplasms/blood , Liver Neoplasms/genetics , Liver Neoplasms/pathology , Male , Microfluidic Analytical Techniques/instrumentation , Microfluidic Analytical Techniques/methods , Middle Aged , Nanostructures/chemistry , Nanowires/chemistry , Neoplasm Staging , RNA, Messenger/genetics , RNA, Messenger/isolation & purification , ROC Curve , Reverse Transcriptase Polymerase Chain Reaction/instrumentation , Reverse Transcriptase Polymerase Chain Reaction/methods
16.
Hear Res ; 381: 107761, 2019 09 15.
Article in English | MEDLINE | ID: mdl-31353070

ABSTRACT

Sensorineural hearing loss is the most common sensory deficit worldwide, yet our understanding of the underlying pathophysiology is limited by the challenges of access to the inner ear in a safe and reliable manner. We present a novel microneedle device for trans-round window membrane liquid biopsy, which utilizes controlled depth of perforation and microliter aspiration control to safely biopsy fluids of the inner ear. Of eleven devices tested in fresh frozen human temporal bones, seven demonstrated alignment between electrical, visual and tactile detection of round window membrane perforation, and nine were successful in aspiration of meaningful diagnostic samples from the perilymphatic space. Purity of the average perilymph sample was 69% for a 5 µL sample volume, equivalent to 3.5 µL attributable to perilymph. Diagnostic success was shown both by transmastoid facial recess and transcanal tympanotomy approach. This device can enable new advances in the understanding of inner ear pathology, and brings us one step closer to liquid biopsy of the inner ear becoming a routine part of clinical care.


Subject(s)
Ear, Inner/pathology , Hearing Loss, Sensorineural/pathology , Liquid Biopsy/instrumentation , Needles , Perilymph , Equipment Design , Humans , Liquid Biopsy/adverse effects , Miniaturization
17.
Lab Chip ; 19(23): 3917-3921, 2019 11 19.
Article in English | MEDLINE | ID: mdl-31650155

ABSTRACT

Microvesicles and exosomes are promising liquid biopsy biomarkers. However, conventional isolation techniques damage and contaminate the biomarkers. We developed an origami-paper-based device for effective isolation of biomarkers with less damage and in fewer steps. The multi-folded device enables the preconcentration of the microvesicles/exosomes on specific layers (∼5-fold) by the ion concentration polarization technique and they were simply isolated from the rest of the sample by unfolding the device.


Subject(s)
Cell-Derived Microparticles/chemistry , Exosomes/chemistry , Paper , Biomarkers/analysis , Humans , Liquid Biopsy/instrumentation , Particle Size , Surface Properties
18.
ACS Appl Mater Interfaces ; 11(45): 41979-41987, 2019 Nov 13.
Article in English | MEDLINE | ID: mdl-31621282

ABSTRACT

Nanomaterials with intrinsic enzyme-mimicking properties (nanozymes) have been widely considered as artificial enzymes in biomedicine. However, manipulating inorganic nanozymes for multivariant targeted bioanalysis is still challenging because of the insufficient catalytic efficiency and biological blocking effect. Here, we rationally designed a spatially engineered hollow Janus hybrid nanozyme vector (h-JHNzyme) based on the bifacial modulation of Ag-Au nanocages. The silver face inside the h-JHNzyme served as an interior gate to promote the enzymatic activity of the Ag-Au nanozyme, whereas two-dimensional DNAzyme-motif nanobrushes deposited on the exterior surface of the h-JHNzyme endowed it with the targeting function and tremendously enhanced the peroxidase-mimicking activity. We demonstrated that the spatially separated modulation of the h-JHNzyme propelled it as a powerful "all-in-one" enzymatic vector with excellent biocompatibility, specific vectorization, remarkable enzymatic performance, and clinical practicability. Further, we programmed it into a stringent catalytic surface-enhanced Raman scattering (SERS) liquid biopsy platform to trace multidimensional tumor-related biomarkers, such as microRNAs and circulating tumor cells, with a limit of detection of fM and single cell level, respectively. The developed enzymatic platform showed great potential in facilitating reliable quantitative SERS liquid biopsy for on-demand clinical diagnosis.


Subject(s)
Enzymes/chemistry , Liquid Biopsy/methods , Nanostructures/chemistry , Peroxidase/chemistry , Spectrum Analysis, Raman/methods , Catalysis , Gold/chemistry , Humans , Liquid Biopsy/instrumentation , Silver/chemistry , Spectrum Analysis, Raman/instrumentation
19.
Biosens Bioelectron ; 132: 17-37, 2019 May 01.
Article in English | MEDLINE | ID: mdl-30851493

ABSTRACT

Smartphone-based point-of-care testing (POCT) is rapidly emerging as a potential alternative to the traditional laboratory-based diagnostic testing owing to economic considerations and availability of medical equipment especially in resource-limited areas. A smartphone, combined with a biosensor and other related accessories, can offer high accuracy and sensitivity for medical testing. Moreover, the ubiquity of smartphone has propelled the development considerably, and accordingly research in recent years has shown promising progress in POCT. Here, we used samples (blood, urine, sweat, saliva and tears) of liquid biopsy as the standard for classification of smartphone-based POCT devices, considering that these samples contain multiple biomarkers of serious diseases. The colorimetric, fluorescent, brightfield, and electrochemical methods were utilized to examine these samples. We performed a comprehensive review of the development of smartphone-based POCT devices over the past two years (2017-2018) and assessed their relative merits and drawbacks. Based on the progress of POCT development, it illustrates that the various technological and economical requirements are urgent and tremendous. The tendency of high-quality, low-cost smartphone-based POCT devices, feature of biosensors (paper-based sensor, flexible device, microfluidic chip, et al.) currently widely used in POCT and recommendations of future works were summarized.


Subject(s)
Biosensing Techniques/instrumentation , Liquid Biopsy/instrumentation , Point-of-Care Testing , Smartphone , Animals , Biosensing Techniques/methods , Colorimetry/instrumentation , Colorimetry/methods , Electrochemical Techniques/instrumentation , Electrochemical Techniques/methods , Equipment Design , Humans , Liquid Biopsy/methods , Spectrometry, Fluorescence/instrumentation , Spectrometry, Fluorescence/methods
20.
Sci Rep ; 9(1): 8032, 2019 05 29.
Article in English | MEDLINE | ID: mdl-31142796

ABSTRACT

Liquid biopsy offers unique opportunities for low invasive diagnosis, real-time patient monitoring and treatment selection. The phenotypic and molecular profile of circulating tumor cells (CTCs) can provide key information about the biology of tumor cells, contributing to personalized therapy. CTC isolation is still challenging, mainly due to their heterogeneity and rarity. To overcome this limitation, a microfluidic chip for label-free isolation of CTCs from peripheral blood was developed. This device, the CROSS chip, captures CTCs based on their size and deformability with an efficiency of 70%. Using 2 chips, 7.5 ml of whole blood are processed in 47 minutes with high purity, as compared to similar technologies and assessed by in situ immunofluorescence. The CROSS chip performance was compared to the CellSearch system in a set of metastatic colorectal cancer patients, resulting in higher capture of DAPI+/CK+/CD45- CTCs in all individuals tested. Importantly, CTC enumeration by CROSS chip enabled stratification of patients with different prognosis. Lastly, cells isolated in the CROSS chip were lysed and further subjected to molecular characterization by droplet digital PCR, which revealed a mutation in the APC gene for most patient samples analyzed, confirming their colorectal origin and the versatility of the technology for downstream applications.


Subject(s)
Cell Separation/instrumentation , Colorectal Neoplasms/diagnosis , Lab-On-A-Chip Devices , Neoplastic Cells, Circulating , Adenomatous Polyposis Coli Protein/genetics , Aged , Cell Line, Tumor , Colorectal Neoplasms/blood , Colorectal Neoplasms/genetics , Colorectal Neoplasms/pathology , DNA Mutational Analysis , Equipment Design , Female , Humans , Liquid Biopsy/instrumentation , Liquid Biopsy/methods , Male , Mutation , Polymerase Chain Reaction , Reference Values , Sensitivity and Specificity
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