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Uruguay Oncology Collection
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1.
Med Mycol ; 62(3)2024 Mar 07.
Article in English | MEDLINE | ID: mdl-38383897

ABSTRACT

In Ghana, most laboratory diagnoses of severe mycoses are based on histopathology findings due to inadequate availability of serology, culture, and molecular tests. The aim of this study was to evaluate the spectrum of mycoses diagnosed in Ghana. We retrospectively reviewed reports from 2012 to 2021 from three major pathology laboratories in Ghana to identify reports indicating the presence of fungal elements and diagnosis of a mycosis, then extracted demographic, clinical history, site of infection, stain(s), used and diagnosed mycosis details. Over the 10-year period, 107 cases were found. No apparent increasing and decreasing trend in the number of cases per year or in a period was observed. The age range of affected patients was from 4 to 86 years. Special stains for fungi were only used in 22 of 107 (20.6%) of cases. The most frequently affected site was the sino-nasal area (34%). Mycosis type was determined for 58 (54.2%) cases, comprising aspergillosis (21), candidiasis (14), dermatophytosis (6), mucormycosis (3), two cases each of chromoblastomycosis, histoplasmosis, eumycetoma, entomophthoromycosis, sporotrichosis, and Malassezia infection and a single case each of cryptococcosis and deep onychomycosis. Of the 53 (49.5%) cases with presumptive diagnosis data, only seven (13.2%) had a pre-biopsy suspicion of mycosis. There is a wide spectrum of mycoses in Ghana, including endemic mycoses not previously reported. Improving the use of special fungal stains could increase yield and mycoses identification. Laboratory diagnostic capacity needs enhancement to complement histopathology investigations with serology, culture, and molecular methods.


In Ghana, diagnosis of mycoses is mainly based on histopathology findings. To appreciate the varied mycoses diagnosed, we reviewed the reports of major laboratories from 2012 to 2021 and found 107 cases including endemic, rare, and previously unreported cases with fungal stains unusually used.


Subject(s)
Aspergillosis , Histoplasmosis , Mycoses , Humans , Child, Preschool , Child , Adolescent , Young Adult , Adult , Middle Aged , Aged , Aged, 80 and over , Retrospective Studies , Ghana/epidemiology , Mycoses/pathology , Mycoses/veterinary , Aspergillosis/veterinary , Histoplasmosis/veterinary
2.
J Zoo Wildl Med ; 55(2): 540-546, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38875213

ABSTRACT

This report describes Schizangiella infections in colubrid and viperid snakes. A captive eastern ratsnake (Pantherophis alleghaniensis) was presented for a large intraoral mass associated with the mandible. The mass was debulked and histologic examination revealed severe, granulomatous stomatitis with intralesional fungi exhibiting morphologic features consistent with Schizangiella serpentis. PCR and sequencing of affected tissues confirmed S. serpentis. Because of declining health, the ratsnake was euthanized and postmortem examination identified a disseminated S. serpentis infection involving the skeletal musculature, lung, kidney, mesentery, and mandible. A wild-caught timber rattlesnake (Crotalus horridus) was presented for cutaneous lesions, weakness, and lethargy and later died. Postmortem examination revealed a mass-like structure in the esophagus characterized by high numbers of Schizangiella-like fungi associated with extensive granulomatous inflammation; the snake also had cutaneous mycosis suggestive of ophidiomycosis. This is the first report to document the unique morphologic features of S. serpentis in tissues and the presentation of schizangiellosis in snakes. Schizangiellosis should be considered as a differential diagnosis for nodular lesions involving the oral cavity and/or the gastrointestinal tract of snakes.


Subject(s)
Crotalus , Animals , Colubridae , Mycoses/veterinary , Mycoses/microbiology , Mycoses/pathology , Mycoses/diagnosis , Thelazioidea/isolation & purification , Animals, Zoo , Male , Female , Venomous Snakes
3.
Nucleic Acids Res ; 49(D1): D1328-D1333, 2021 01 08.
Article in English | MEDLINE | ID: mdl-33080028

ABSTRACT

We present Peryton (https://dianalab.e-ce.uth.gr/peryton/), a database of experimentally supported microbe-disease associations. Its first version constitutes a novel resource hosting more than 7900 entries linking 43 diseases with 1396 microorganisms. Peryton's content is exclusively sustained by manual curation of biomedical articles. Diseases and microorganisms are provided in a systematic, standardized manner using reference resources to create database dictionaries. Information about the experimental design, study cohorts and the applied high- or low-throughput techniques is meticulously annotated and catered to users. Several functionalities are provided to enhance user experience and enable ingenious use of Peryton. One or more microorganisms and/or diseases can be queried at the same time. Advanced filtering options and direct text-based filtering of results enable refinement of returned information and the conducting of tailored queries suitable to different research questions. Peryton also provides interactive visualizations to effectively capture different aspects of its content and results can be directly downloaded for local storage and downstream analyses. Peryton will serve as a valuable source, enabling scientists of microbe-related disease fields to form novel hypotheses but, equally importantly, to assist in cross-validation of findings.


Subject(s)
Bacterial Infections/microbiology , Databases, Factual , Gastrointestinal Diseases/microbiology , Host-Pathogen Interactions , Mycoses/microbiology , Neoplasms/microbiology , Neurodegenerative Diseases/microbiology , Bacterial Infections/classification , Bacterial Infections/genetics , Bacterial Infections/pathology , Cohort Studies , Data Mining , Gastrointestinal Diseases/classification , Gastrointestinal Diseases/genetics , Gastrointestinal Diseases/pathology , Humans , Internet , Mycoses/classification , Mycoses/genetics , Mycoses/pathology , Neoplasms/classification , Neoplasms/genetics , Neoplasms/pathology , Neurodegenerative Diseases/classification , Neurodegenerative Diseases/genetics , Neurodegenerative Diseases/pathology , Research Design , Software
4.
Pediatr Dermatol ; 40(5): 900-903, 2023.
Article in English | MEDLINE | ID: mdl-36813738

ABSTRACT

Congenital erosive and vesicular dermatosis (CEVD) is a rare skin condition that most commonly presents as erosive and vesicular lesions on the trunk and extremities in premature infants and heals with characteristic reticulated and supple scarring (RSS). The exact pathogenesis of CEVD is unknown and is typically a diagnosis of exclusion. We present the cases of two extremely premature neonates with Candida septicemia who were found to have diffuse, erythematous skin eruptions shortly after birth that ultimately healed with RSS. Through these cases, we highlight the importance of including fungal infection in the work-up of CEVD healing with RSS.


Subject(s)
Mycoses , Skin Abnormalities , Skin Diseases, Vesiculobullous , Infant , Infant, Newborn , Humans , Cicatrix/etiology , Wound Healing , Skin Diseases, Vesiculobullous/pathology , Skin/pathology , Skin Abnormalities/pathology , Mycoses/complications , Mycoses/pathology , Rare Diseases/complications , Rare Diseases/pathology
5.
BMC Oral Health ; 23(1): 441, 2023 07 02.
Article in English | MEDLINE | ID: mdl-37394471

ABSTRACT

BACKGROUND: Deep-seated fungal infections of the oral cavity present a diagnostic challenge as the clinical presentation is usually aggressive leading to misdiagnosis of malignancy. Nevertheless, the species of fungi responsible for such diseases in immunocompromised individuals are varied thus, further complicating the diagnosis. CASE PRESENTATION: Presented below is a case regarding the diagnosis and management of deep mycotic infection of the oral cavity caused by a fungus that very rarely causes disease in humans, the Verticillium species. CONCLUSIONS: The case highlights the fact that rare pathogens should also be considered in the differential diagnosis, especially in patients with debilitating conditions like uncontrolled diabetes. Likewise, histopathological evaluation and microbiological investigations are of paramount importance and remain the gold standard to reach a definitive diagnosis.


Subject(s)
Mycoses , Verticillium , Humans , Mycoses/diagnosis , Mycoses/microbiology , Mycoses/pathology , Diagnosis, Differential
6.
Environ Monit Assess ; 195(6): 662, 2023 May 11.
Article in English | MEDLINE | ID: mdl-37169998

ABSTRACT

Snake fungal disease, caused by Ophidiomyces ophidiicola, is recognized as a potential concern for North American snakes. We tested skin swabs from Northern Pine Snakes (Pituophis melanoleucus melanoleucus) in the New Jersey pinelands for the presence of O. ophidiicola before emergence from hibernation. We used qPCR to test the collected swabs for the presence of O. ophidiicola, then determined pathogen prevalence as a function of sampling year, sampling location (skin lesion, healthy ventral skin, healthy head skin) sex, and age. There were no temporal trends in O. ophidiicola detection percentages on snakes, which varied from 58 to 83% in different years. Ophidiomyces ophidiicola detection on snakes was highest in swabs of skin lesions (71%) and lowest in head swabs (29%). Males had higher prevalence than females (82% versus 62%). The fungus was not detected in hatchling snakes (age 0) in the fall, but 75% of juveniles tested positive at the end of hibernation (age 1 year). We also screened hibernacula soil samples for the presence of O. ophidiicola. Where snakes hibernated, 69% of soil samples were positive for O. ophidiicola, and 85% of snakes lying on positive soil samples also tested positive for the pathogen. Although a high proportion of snakes (73%) tested positive for O. ophidiicola during our 4-year study, the snakes appeared healthy except for small skin lesions. We conclude that O. ophidiicola prevalence is high on hibernating Northern Pine Snakes and in the hibernacula soil, with a strong association between snakes and positive adjacent soil. This is the first demonstration that snakes likely become infected during hibernation.


Subject(s)
Environmental Monitoring , Mycoses , Male , Animals , Female , New Jersey/epidemiology , Prevalence , Snakes/microbiology , Mycoses/microbiology , Mycoses/pathology
7.
J Clin Lab Anal ; 36(2): e24209, 2022 Feb.
Article in English | MEDLINE | ID: mdl-34997792

ABSTRACT

BACKGROUND: Fungal rhinosinusitis (FRS) encompasses a various spectrum of diseases. Histopathology is the "reference method" for diagnosing FRS, but it cannot determine the genus and species. Moreover, in more than 50% of the histopathologically proven cases, the culture elicited no reliable results. This study was an attempt to evaluate the diagnostic efficiency of semi-nested polymerase chain reaction (PCR) from formalin-fixed paraffin-embedded (FFPE) functional endoscopic sinus surgery (FESS) in FRS patients. METHODS: One hundred ten specimens were subjected to DNA extraction and histopathology examination. The amplification of the ß-globin gene by conventional PCR was used to confirm the quality of extracted DNA. The semi-nested PCR was performed using ITS1, ITS2, and ITS4 primers during two steps. Sequencing the internal transcribed spacer region (ITS1-5.8S-ITS2) to identify causative agents was performed on PCR products. RESULTS: Sixty-four out of 110 samples were positive by histopathology evidence, of which 56 samples (87.5%) were positive by PCR. Out of 46 negative samples by histopathological methods, five samples (10.9%) yielded positive results by PCR. Sensitivity, specificity, positive predictive value, and negative predictive value of the semi-nested PCR method were reported 87.5%, 89.2%, 92.7%, and 85.2%, respectively. The kappa factor between PCR and histopathological methods was 0.76, indicating substantial agreements between these two tests. CONCLUSION: Due to the acceptable sensitivity and specificity of the present method, it might be used to diagnose fungal sinusitis infections along with microscopic techniques. This method is recommended to confirm the diagnose of suspected fungal sinusitis with negative histopathology results.


Subject(s)
Fungi/genetics , Mycoses/diagnosis , Paraffin Embedding , Polymerase Chain Reaction , Rhinitis/pathology , Sinusitis/pathology , Adult , Aged , Child , Child, Preschool , Female , Formaldehyde , Fungi/isolation & purification , Humans , Male , Middle Aged , Mycoses/pathology , Rhinitis/diagnosis , Rhinitis/microbiology , Sensitivity and Specificity , Sinusitis/diagnosis , Sinusitis/microbiology
8.
J Biol Chem ; 295(42): 14458-14472, 2020 10 16.
Article in English | MEDLINE | ID: mdl-32796038

ABSTRACT

Fungi inhabit extraordinarily diverse ecological niches, including the human body. Invasive fungal infections have a devastating impact on human health worldwide, killing ∼1.5 million individuals annually. The majority of these deaths are attributable to species of Candida, Cryptococcus, and Aspergillus Treating fungal infections is challenging, in part due to the emergence of resistance to our limited arsenal of antifungal agents, necessitating the development of novel therapeutic options. Whereas conventional antifungal strategies target proteins or cellular components essential for fungal growth, an attractive alternative strategy involves targeting proteins that regulate fungal virulence or antifungal drug resistance, such as regulators of fungal stress responses. Stress response networks enable fungi to adapt, grow, and cause disease in humans and include regulators that are highly conserved across eukaryotes as well as those that are fungal-specific. This review highlights recent developments in elucidating crystal structures of fungal stress response regulators and emphasizes how this knowledge can guide the design of fungal-selective inhibitors. We focus on the progress that has been made with highly conserved regulators, including the molecular chaperone Hsp90, the protein phosphatase calcineurin, and the small GTPase Ras1, as well as with divergent stress response regulators, including the cell wall kinase Yck2 and trehalose synthases. Exploring structures of these important fungal stress regulators will accelerate the design of selective antifungals that can be deployed to combat life-threatening fungal diseases.


Subject(s)
Antifungal Agents/chemistry , Candida/metabolism , Fungal Proteins/metabolism , Antifungal Agents/metabolism , Binding Sites , Calcineurin/chemistry , Calcineurin/metabolism , Drug Design , Fungal Proteins/chemistry , HSP90 Heat-Shock Proteins/chemistry , HSP90 Heat-Shock Proteins/metabolism , Humans , Molecular Dynamics Simulation , Mycoses/microbiology , Mycoses/pathology
9.
Mycoses ; 64(8): 851-859, 2021 Aug.
Article in English | MEDLINE | ID: mdl-34028893

ABSTRACT

BACKGROUND: Although fungi are found relatively easily by microscopic examination of pathological samples, identification of fungal genus and species in pathological samples is not easy because the morphological features of fungi are similar among genera and species. OBJECTIVES: A multiple real-time PCR was developed for identification of fungal genus/species, and morphological characterizations of fungi were analysed in pathological samples. PATIENTS/METHODS: Seventy-five formalin-fixed paraffin-embedded (FFPE) samples morphologically proven to contain any fungus were examined. A multiple real-time PCR system was developed to identify 25 fungal genus/species in pathological samples. Morphology of fungus in the specimens was re-reviewed retrospectively based on the results of real-time PCR. RESULTS: Real-time PCR identified fungal genus/species in 56 of 75 (74.6%) specimens with histologically proven fungal infection. In 53 specimens of filamentous fungi, Aspergillus spp. (22 specimens), Cladosporium (8), Scedosporium apiospermum (4), Malassezia sympodialis (1) and Candida albicans (1) were identified. Pseudohyphae of Candida were confused with filamentous fungus in a case. Morphological observation suggested differences in the presence of septated or non-septated hyphae, the filament size, and the branch angle among genus/species of filamentous fungi; however, genus/species was not able to be determined by their morphological features. In 22 specimens of yeasts, real-time PCR allowed for the identification of Candida albicans (12 specimens), Candida glabrata (2), Cladosporium (2), Scedosporium apiospermum (2), Pichia kudriavzevii (1) and Aspergillus sydowii (1). CONCLUSIONS: These data suggest that it is difficult to identify fungal genus/species by morphological features alone. Real-time PCR is useful to identify fungal genus/species in pathological samples.


Subject(s)
DNA, Fungal/genetics , Formaldehyde , Fungi/genetics , Fungi/isolation & purification , Mycoses/microbiology , Paraffin Embedding , Female , Fungi/classification , Humans , Molecular Diagnostic Techniques , Multiplex Polymerase Chain Reaction , Mycoses/pathology , Retrospective Studies
10.
Mycoses ; 64(2): 187-193, 2021 Feb.
Article in English | MEDLINE | ID: mdl-33075162

ABSTRACT

BACKGROUND: Onychomycosis affects 5.5% of the general population and represents up to 50% of all nail diseases. Diagnosis and pathogen identification are essential in order to plan an adequate treatment. Many diagnostic techniques are available, and however, no solid data regarding comparison between different techniques over a large number of specimens are available to date. OBJECTIVES: To compare sensitivity and specificity of direct examination, histopathology and fungal culture in our referral mycology laboratory. METHODS: Nail specimens received at the cutaneous pathology and mycology laboratory of the University Hospital Saint-Pierre (Brussels, Belgium) between 1 January and 15 May 2018 were retrospectively analysed. All specimens were submitted to direct examination and culture. In cases of adequate specimen size, histopathology was performed. Fungal culture was considered the gold standard for diagnosis. RESULTS: A total of 2245 nail samples were included in the study. Onychomycosis was diagnosed in 1266 specimens. Sensitivity and positive predictive value were found to be higher for direct examination compared to histopathology, while sensitivity of direct examination was found to be lower. Combined approach with all the three techniques showed the highest rate of positivity, followed by the association of direct examination and histopathology. CONCLUSIONS: To our knowledge, this study included the largest number of nail specimens to date, allowing a comparison between direct examination, culture and histopathology. Direct examination showed to be the most performing technique in routine practice. Histopathology represents the most effective option in cases where both specimen size and laboratory resources are adequate. Our paper adds to the literature the 'real-life' experience of the mycology laboratory of a referral centre for nail diseases.


Subject(s)
Diagnostic Tests, Routine/methods , Mycoses/diagnosis , Mycoses/pathology , Onychomycosis/diagnosis , Onychomycosis/pathology , Belgium , Culture Techniques , Fungi/isolation & purification , Humans , Mycology/methods , Mycoses/microbiology , Nails/microbiology , Nails/pathology , Onychomycosis/microbiology , Retrospective Studies , Sensitivity and Specificity
11.
Am J Dermatopathol ; 43(7): 489-492, 2021 Jul 01.
Article in English | MEDLINE | ID: mdl-33481375

ABSTRACT

ABSTRACT: Epidermal barrier disruption caused by atypical squamous proliferations of the lip (SOL) creates an ideal environment for fungal growth. Histologic features of SOL include parakeratosis overlying partial- or full-thickness keratinocyte atypia with or without invasion of the dermis, dermal solar elastosis, and scattered inflammatory cells which are predominantly lymphocytes. Histologic features of SOL with fungal superinfections overlap those seen in primary fungal cheilitis with reactive atypia, creating a diagnostic challenge. One-hundred seventy SOL cases were examined for the presence of fungal elements, and the histological features associated with superinfection were identified. Cases diagnosed as actinic cheilitis with fungal superinfection were carefully examined to rule out the possibility of misdiagnosed primary fungal cheilitis with reactive atypia. Histopathological characteristics commonly present with fungal hyphae included intraepidermal or intradermal neutrophils, bacterial colonies, and erosion or ulceration. Medical record review of those patients treated conservatively with topical antifungals revealed persistent clinical neoplasm and histological evidence of residual SOL on repeat biopsy. Thus, when biopsies exhibit histological overlap between these 2 entities, clinicians should keep a high index of suspicion for underlying SOL and carefully follow these patients if conservative antifungal therapy is initially trialed.


Subject(s)
Cell Proliferation , Cheilitis/pathology , Fungi/pathogenicity , Hyphae/pathogenicity , Lip Neoplasms/pathology , Mycoses/pathology , Precancerous Conditions/pathology , Adult , Aged , Aged, 80 and over , Antifungal Agents/therapeutic use , Biopsy , Cheilitis/drug therapy , Cheilitis/microbiology , Diagnosis, Differential , Female , Fungi/isolation & purification , Host-Pathogen Interactions , Humans , Hyphae/isolation & purification , Lip Neoplasms/drug therapy , Lip Neoplasms/microbiology , Male , Middle Aged , Mycoses/drug therapy , Mycoses/microbiology , Precancerous Conditions/drug therapy , Precancerous Conditions/microbiology , Predictive Value of Tests , Treatment Outcome
12.
J Invertebr Pathol ; 178: 107521, 2021 01.
Article in English | MEDLINE | ID: mdl-33347864

ABSTRACT

Beekeeping activities have increased recently in Argentina, a country that is a major consumer of honey and other products from hives. With the advancement of monoculture areas in Argentina and worldwide, beekeepers move from one area to another in search of floral resources, thus spreading diseases such as chalkbrood, caused by the fungus Ascosphaera apis. Although there are few effective antifungals for the control of chalkbrood, different natural products have been investigated in recent years. Current research is focusing on the intestinal microbiota for the prevention of different pathogens and parasites. In this work, we analyzed the in vivo probiotic effect of three lactic acid bacteria (genus Lactobacillus spp.) isolated from pollen bread from apiaries of Jujuy province on A. apis strains from Spanish and Argentine provinces. Special hives were made for the assays, and a protective effect was observed in larvae of bees fed lactic acid bacteria added to sugar syrup at 105 CFU/mL concentrations, administered from May to September in two consecutive years. The results showed that the three lactic acid bacteria reduced larval mummification by percentages greater than 80%. Therefore, this work brings a first approximation of the in vivo probiotic effect of lactic bacteria against A. apis.


Subject(s)
Bees , Lactobacillus , Onygenales , Probiotics/pharmacology , Animals , Bees/drug effects , Bees/microbiology , Gastrointestinal Microbiome , Larva/drug effects , Larva/microbiology , Mycoses/drug therapy , Mycoses/pathology , Onygenales/drug effects , Onygenales/pathogenicity
13.
Annu Rev Microbiol ; 69: 71-92, 2015.
Article in English | MEDLINE | ID: mdl-26488273

ABSTRACT

In humans, microbial cells (including bacteria, archaea, and fungi) greatly outnumber host cells. Candida albicans is the most prevalent fungal species of the human microbiota; this species asymptomatically colonizes many areas of the body, particularly the gastrointestinal and genitourinary tracts of healthy individuals. Alterations in host immunity, stress, resident microbiota, and other factors can lead to C. albicans overgrowth, causing a wide range of infections, from superficial mucosal to hematogenously disseminated candidiasis. To date, most studies of C. albicans have been carried out in suspension cultures; however, the medical impact of C. albicans (like that of many other microorganisms) depends on its ability to thrive as a biofilm, a closely packed community of cells. Biofilms are notorious for forming on implanted medical devices, including catheters, pacemakers, dentures, and prosthetic joints, which provide a surface and sanctuary for biofilm growth. C. albicans biofilms are intrinsically resistant to conventional antifungal therapeutics, the host immune system, and other environmental perturbations, making biofilm-based infections a significant clinical challenge. Here, we review our current knowledge of biofilms formed by C. albicans and closely related fungal species.


Subject(s)
Biofilms , Candida albicans/physiology , Candidiasis/microbiology , Fungi/physiology , Animals , Candida albicans/cytology , Candida albicans/growth & development , Candidiasis/pathology , Cell Adhesion , Fungi/classification , Humans , Mycoses/microbiology , Mycoses/pathology
14.
BMC Infect Dis ; 20(1): 599, 2020 Aug 14.
Article in English | MEDLINE | ID: mdl-32795259

ABSTRACT

BACKGROUND: Fungal bloodstream infections (FBI) among intensive care unit (ICU) patients are increasing. Our objective was to characterize the fungal pathogens that cause bloodstream infections and determine the epidemiology and risk factors for patient mortality among ICU patients in Meizhou, China. METHODS: Eighty-one ICU patients with FBI during their stays were included in the study conducted from January 2008 to December 2017. Blood cultures were performed and the antimicrobial susceptibility profiles of the resulting isolates were determined. Logistic multiple regression and ROC curve analysis were used to assess the risk factors for mortality among the cases. RESULTS: The prevalence of FBI in ICU patients was 0.38% (81/21,098) with a mortality rate of 36% (29/81). Ninety-eight strains of bloodstream-infecting fungi, mainly Candida spp., were identified from these patients. Candida albicans was most common (43%). Two strains of C. parapsilosis were no-sensitive to caspofungin, C. glabrata were less than 80% sensitive to azole drugs. Logistic multiple regression showed that age, serum albumin, APACHE II score, three or more underlying diseases, and length of stay in ICU were independent risk factors for mortality in FBI. ROC curve analysis showed that APACHE II scores > 19 and serum albumin ≤25 g/L were the best predictors of mortality. CONCLUSION: Candida spp. predominated with high mortality rates among cases of FBI in ICU. Thus, clinical staff should enhance overall patient monitoring and concurrently monitor fungal susceptibility to reduce mortality rates.


Subject(s)
Mycoses/pathology , APACHE , Aged , Antifungal Agents/therapeutic use , Area Under Curve , Azoles/therapeutic use , Candida albicans/isolation & purification , Candida parapsilosis/isolation & purification , China/epidemiology , Female , Hospital Mortality , Humans , Intensive Care Units , Length of Stay , Logistic Models , Male , Middle Aged , Mycoses/drug therapy , Mycoses/epidemiology , Mycoses/mortality , Prevalence , ROC Curve , Risk Factors
15.
Appl Microbiol Biotechnol ; 104(10): 4247-4257, 2020 May.
Article in English | MEDLINE | ID: mdl-32206837

ABSTRACT

Melanins provide fungi protection from environmental stressors, support their ecological roles, and can confer virulence in pathogens. While the function, structure, and synthesis of melanins in fungi are not fully understood, they have been shown to have varied roles. Recent research has revealed a wide range of functions, from radiation resistance to increasing virulence, shedding light on fungal diversity. Understanding fungal melanins can provide useful information, from harnessing the properties of these various melanins to targeting fungal infections.Key Points• Melanotic fungi are widespread in nature. • Melanin functions to protect fungi in the environment from a range of stresses. • Melanin contributes to pathogenesis and drug resistance of pathogenic fungi.


Subject(s)
Drug Resistance, Fungal , Environmental Microbiology , Fungi/pathogenicity , Melanins/metabolism , Animals , Humans , Mycoses/microbiology , Mycoses/pathology , Virulence
16.
Chemotherapy ; 65(3-4): 59-64, 2020.
Article in English | MEDLINE | ID: mdl-32877905

ABSTRACT

Genetic polymorphism exists for CYP2C19, a dominant metabolic enzyme of voriconazole (VRCZ), and VRCZ pharmacokinetics has been shown to fluctuate according to the CYP2C19 phenotype. Although dosages for different phenotypes have been recommended in various retrospective studies, few reports have adjusted the initial VRCZ dose based on CYP2C19 phenotype determined prior to administration. In this study, we prospectively evaluated the usefulness of CYP2C19 polymorphism analysis in adjusting the initial VRCZ maintenance dose. The study enrolled 19 patients who underwent analysis of CYP2C19 polymorphism prior to VRCZ administration. Subjects were classified into 3 phenotype subgroups: extensive metabolizer (EM), intermediate metabolizer (IM), and poor metabolizer (PM). The initial VRCZ maintenance doses given twice daily were proposed as follows: approximately 8, 6, and 4 mg/kg/day for EM, IM and PM, respectively, according to previous reports. In EM, the initial maintenance dose was 8.0 ± 0.5 mg/kg/day, and trough level was 6.6 ± 2.4 µg/mL. By contrast, the initial maintenance doses in IM and PM were 5.5 ± 0.7 and 4.1 ± 0.3 mg/kg/day, and the initial trough concentrations were 2.9 ± 1.2 and 2.6 ± 0.4 µg/mL, respectively. The attainment rate of target trough concentration of 1-6 µg/mL was 50% in EM, and was 100% in IM and PM. Determining the initial dose of VRCZ only by phenotype based on CYP2C19 gene polymorphism was found to be challenging. However, decreasing the initial maintenance dose in IM and PM may be important for adjusting the initial trough level to target range.


Subject(s)
Antifungal Agents/metabolism , Cytochrome P-450 CYP2C19/genetics , Voriconazole/metabolism , Administration, Intravenous , Adult , Aged , Aged, 80 and over , Antifungal Agents/blood , Antifungal Agents/therapeutic use , Chromatography, High Pressure Liquid , Cytochrome P-450 CYP2C19/metabolism , Dose-Response Relationship, Drug , Drug Administration Schedule , Female , Genotype , Humans , Male , Middle Aged , Mycoses/drug therapy , Mycoses/pathology , Phenotype , Polymorphism, Genetic , Prospective Studies , Voriconazole/blood , Voriconazole/therapeutic use
17.
Mycoses ; 63(11): 1235-1243, 2020 Nov.
Article in English | MEDLINE | ID: mdl-33090565

ABSTRACT

BACKGROUND: In China, the prevalence of superficial fungal infections of the foot is high and recurrence is common. However, a prospective, large-scale and multicentre study on the aetiology of superficial fungal infections of the foot is still lacking. OBJECTIVES: To study the epidemiology of aetiological agents of superficial fungal infections of the foot in urban outpatients in mainland China, as well as to understand the aetiology features of the pathogenic agent. METHODS: The study was designed as a multicentre, prospective epidemiological survey. A total of 1704 subjects were enrolled from seven geographical areas in mainland China. For each subject, one mycological sample and one bacterial sample were collected. KOH wet mount examination and culture were performed at local laboratories. The bacterial results were only reported in those with positive mycology. Further morphological identification and, if necessary, molecular biological identification were conducted in a central laboratory. RESULTS: Of 1704 enrolled subjects, 1327 (77.9%) subjects had positive fungal culture results. The incidence of dermatophytes, yeasts and moulds was 90.1%, 8.1% and 1.1%, respectively. The most frequently isolated aetiological agent (fungus) was Trichophyton rubrum. Moccasin form was the most commonly reported clinical diagnosis of superficial fungal infections. The most frequently isolated bacterial genus in patients was Staphylococcus. CONCLUSION: This study prospectively investigated the clinical and mycological features of human dermatophytosis in mainland China. T rubrum was the most frequently isolated fungus, and moccasin form was the most commonly reported clinical diagnosis of superficial fungal infections.


Subject(s)
Dermatomycoses , Foot/microbiology , Adult , Arthrodermataceae/isolation & purification , Arthrodermataceae/pathogenicity , China/epidemiology , Dermatomycoses/epidemiology , Dermatomycoses/etiology , Dermatomycoses/pathology , Female , Foot/pathology , Fungi/isolation & purification , Fungi/pathogenicity , Humans , Incidence , Male , Mycoses/epidemiology , Mycoses/etiology , Mycoses/pathology , Outpatients , Prevalence , Prospective Studies , Yeasts/isolation & purification , Yeasts/pathogenicity
18.
Mycoses ; 63(11): 1203-1214, 2020 Nov.
Article in English | MEDLINE | ID: mdl-33090564

ABSTRACT

The genera Acremonium and Sarocladium comprise a high diversity of morphologically and genetically related fungi generally found in the environment, although a few species, mainly Sarocladium kiliense and Acremonium egyptiacum, can also be involved in many human infections. Clinical management of opportunistic infections caused by these fungi is very complex, since their correct identification is unreliable, and they generally show poor antifungal response. More than 300 clinical cases involving a broad range of Acremonium/Sarocladium infections have so far been published, and with this review we aim to compile and provide a detailed overview of the current knowledge on Acremonium/Sarocladium human infections in terms of presentation, diagnosis, treatments and prognoses. We also aim to summarise and discuss the data currently available on their antifungal susceptibility, emphasising the promising results obtained with voriconazole as well as their impact in terms of animal infections.


Subject(s)
Hypocreales , Mycoses , Opportunistic Infections , Acremonium/classification , Acremonium/drug effects , Acremonium/isolation & purification , Acremonium/pathogenicity , Animals , Antifungal Agents/therapeutic use , Arthritis/drug therapy , Arthritis/microbiology , Blood/microbiology , Central Nervous System Infections/drug therapy , Central Nervous System Infections/microbiology , Dermatomycoses/drug therapy , Drug Resistance, Fungal , Endocarditis/drug therapy , Endocarditis/microbiology , Eye Infections/drug therapy , Eye Infections/microbiology , Humans , Hypocreales/classification , Hypocreales/drug effects , Hypocreales/isolation & purification , Hypocreales/pathogenicity , Invasive Fungal Infections/drug therapy , Invasive Fungal Infections/pathology , Mycetoma/drug therapy , Mycoses/drug therapy , Mycoses/pathology , Mycoses/veterinary , Onychomycosis/drug therapy , Onychomycosis/microbiology , Opportunistic Infections/drug therapy , Opportunistic Infections/pathology , Opportunistic Infections/veterinary , Osteomyelitis/drug therapy , Osteomyelitis/microbiology , Peritonitis/drug therapy , Peritonitis/microbiology , Respiratory Tract Infections/drug therapy , Respiratory Tract Infections/microbiology , Voriconazole/therapeutic use
19.
Mycopathologia ; 185(5): 893-904, 2020 Oct.
Article in English | MEDLINE | ID: mdl-31894499

ABSTRACT

Talaromycosis is a disseminated disease caused by Talaromyces (Penicillium) marneffei, mainly seen in acquired immunodeficiency syndrome (AIDS) patients. Its distribution is restricted to southeast Asian countries; a small pocket of endemicity exists in the northeast Indian state of Manipur. Here, we present a series of five cases presenting to our tertiary care hospital, originating from non-endemic states neighboring Manipur. In addition to the geographical distinction, a variety of unique features were noted in our cases, including human immunodeficiency virus (HIV)-negative hosts, the absence of typical skin lesions, presentation as pneumonia and generalized lymphadenopathy. Our series highlights the importance of distinguishing this disease from histoplasmosis and tuberculosis, both endemic in India.


Subject(s)
Mycoses , Talaromyces , AIDS-Related Opportunistic Infections , Adult , Antifungal Agents/therapeutic use , Child, Preschool , Communicable Diseases, Emerging , Diagnosis, Differential , Endemic Diseases , Female , Histoplasmosis/diagnosis , Humans , India/epidemiology , Male , Middle Aged , Mycoses/diagnosis , Mycoses/epidemiology , Mycoses/pathology , Neglected Diseases , Talaromyces/isolation & purification , Talaromyces/pathogenicity , Tertiary Care Centers , Tuberculosis/diagnosis
20.
Mycopathologia ; 185(2): 347-355, 2020 Apr.
Article in English | MEDLINE | ID: mdl-32100219

ABSTRACT

BACKGROUND: Patients with hematological malignancies and allogeneic hematopoietic stem-cell transplant recipients carry a high risk of rare (non-Aspergillus molds and non-Candida yeasts) invasive fungal infections (IFI). METHODS: We retrospectively evaluated and described the patient profile, clinical manifestations, isolated species, treatment and outcome of patients with hematological malignancies diagnosed with these rare IFIs during 15 years in a large single hemato-oncology center. RESULTS: Eighty-seven patients with hematological malignancies treated in our center had at least one positive culture or molecular identification of a rare fungus. Ninety-three isolates were considered the etiological agents of the infection. The most common underlying hematological malignancy was acute myeloid leukemia, 36 patients (41.4%). Eighty patients (91%) received chemotherapy less than 30 days prior to IFI diagnosis. The most frequent site of infection was the respiratory tract: 34 patients (39%) had pulmonary and 19 patients (22%) had a sinusal or nasopharyngeal infections. Disseminated infection, defined as positive blood cultures or parallel infection in multiple organ systems, was documented in 20 patients (23%). The most common fungal species were Fusarium (35%) and Zygomycetes (25%). Coinfection with more than one fungus was noted in 20 patients (23%). Forty-seven of 87 patients (54%) in this study died within 90 days of IFI diagnosis. CONCLUSIONS: Rare IFIs in patients with hematological malignancy become increasingly frequent. Early identification with traditional and molecular methods is important in management of these patients.


Subject(s)
Hematologic Neoplasms/complications , Hematopoietic Stem Cell Transplantation/adverse effects , Invasive Fungal Infections , Mycoses , Adolescent , Adult , Aged , Child , Child, Preschool , Coinfection , Drug-Related Side Effects and Adverse Reactions , Female , Fungi/classification , Fungi/isolation & purification , Fungi/pathogenicity , Fusarium/classification , Fusarium/isolation & purification , Fusarium/pathogenicity , Humans , Immunosuppressive Agents/adverse effects , Invasive Fungal Infections/diagnosis , Invasive Fungal Infections/pathology , Leukemia, Myeloid, Acute/complications , Male , Middle Aged , Mycoses/diagnosis , Mycoses/pathology , Retrospective Studies , Tertiary Care Centers , Young Adult , Zygomycosis
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