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1.
Annu Rev Immunol ; 36: 157-191, 2018 04 26.
Article in English | MEDLINE | ID: mdl-29237128

ABSTRACT

In the last few decades, the AIDS pandemic and the significant advances in the medical management of individuals with neoplastic and inflammatory conditions have resulted in a dramatic increase in the population of immunosuppressed patients with opportunistic, life-threatening fungal infections. The parallel development of clinically relevant mouse models of fungal disease and the discovery and characterization of several inborn errors of immune-related genes that underlie inherited human susceptibility to opportunistic mycoses have significantly expanded our understanding of the innate and adaptive immune mechanisms that protect against ubiquitous fungal exposures. This review synthesizes immunological knowledge derived from basic mouse studies and from human cohorts and provides an overview of mammalian antifungal host defenses that show promise for informing therapeutic and vaccination strategies for vulnerable patients.


Subject(s)
Host-Pathogen Interactions/immunology , Mycoses/immunology , Mycoses/microbiology , Acquired Immunodeficiency Syndrome/complications , Acquired Immunodeficiency Syndrome/immunology , Adaptive Immunity , Animals , Disease Susceptibility , Fungal Vaccines/immunology , Fungi/immunology , Humans , Immune System/cytology , Immune System/immunology , Immune System/metabolism , Immunity, Innate , Immunocompromised Host , Immunotherapy , Mycoses/prevention & control , Mycoses/therapy , Signal Transduction
2.
Nat Rev Mol Cell Biol ; 19(4): 262-274, 2018 04.
Article in English | MEDLINE | ID: mdl-29209056

ABSTRACT

Alterations in the regulation of gene expression are frequently associated with developmental diseases or cancer. Transcription activation is a key phenomenon in the regulation of gene expression. In all eukaryotes, mediator of RNA polymerase II transcription (Mediator), a large complex with modular organization, is generally required for transcription by RNA polymerase II, and it regulates various steps of this process. The main function of Mediator is to transduce signals from the transcription activators bound to enhancer regions to the transcription machinery, which is assembled at promoters as the preinitiation complex (PIC) to control transcription initiation. Recent functional studies of Mediator with the use of structural biology approaches and functional genomics have revealed new insights into Mediator activity and its regulation during transcription initiation, including how Mediator is recruited to transcription regulatory regions and how it interacts and cooperates with PIC components to assist in PIC assembly. Novel roles of Mediator in the control of gene expression have also been revealed by showing its connection to the nuclear pore and linking Mediator to the regulation of gene positioning in the nuclear space. Clear links between Mediator subunits and disease have also encouraged studies to explore targeting of this complex as a potential therapeutic approach in cancer and fungal infections.


Subject(s)
Mediator Complex/genetics , Mediator Complex/metabolism , Transcription, Genetic , Animals , Cyclin-Dependent Kinase 8/antagonists & inhibitors , Evolution, Molecular , Gene Expression Regulation , Humans , Mediator Complex/chemistry , Models, Biological , Models, Genetic , Mycoses/genetics , Mycoses/metabolism , Mycoses/therapy , Neoplasms/genetics , Neoplasms/metabolism , Neoplasms/therapy , Nuclear Pore/genetics , Nuclear Pore/metabolism , RNA Polymerase II/metabolism , Regulatory Sequences, Nucleic Acid , Signal Transduction , Transcription Initiation, Genetic , Transcriptional Activation
4.
BMC Musculoskelet Disord ; 25(1): 648, 2024 Aug 16.
Article in English | MEDLINE | ID: mdl-39152412

ABSTRACT

BACKGROUND: Fungal periprosthetic joint infection (FPJI) is an infrequent but devastating complication that imposes a heavy burden on patients. At present, a consensus regarding the most optimal surgical option for patients with FPJI, the ideal duration of systemic antifungal treatment, and many other issues has not been reached. METHODS: A comprehensive literature search was performed on the PubMed and Embase databases. The search criteria employed were as follows: (fungal OR candida OR mycotic) AND periprosthetic joint infection. Initially, the titles and abstracts were screened, and subsequently, studies deemed irrelevant or duplicative were eliminated. Following this, the complete texts of remaining articles were thoroughly examined. According to the inclusion and exclusion criteria, 489 joints in 24 articles were screened out. We further extracted the demographic characteristics (age, gender, body mass index, etc.), clinical presentation, fungal species, presence of bacterial coinfection, surgical methods, systemic and local antifungal therapy, and treatment outcomes. Subgroup data were analyzed according to fungal species and bacterial coinfection. Univariate logistic regression analysis was conducted to ascertain the risk factors associated with the infection recurrence. RESULTS: A total of 506 fungi were identified within 489 joints. The most prevalent fungal species were Candida albicans (41.5%). Out of 247 joints (50.5%) presenting with concurrent fungal and bacterial infections. Among the initial surgical interventions, two-stage exchange was the most common (59.1%). The infection recurrence rates of DAIR, resection arthroplasty, two-stage, one-stage, and three-stage exchange were 81.4%, 53.1%, 47.7%, 35.0%, and 30%, respectively. The mean duration of systemic antifungal therapy was 12.8 weeks. The most common drugs used both in intravenous (55.9%) and oral therapy (84.0%) were fluconazole. The proportion of patients who used antifungal drugs after replantation (two-stage and three-stage) was 87.6%. 33.2% of cement spacer or fixed cement contained antifungal drugs, of which amphotericin B was the main choice (82.7%). FPJI caused by candida albicans (OR = 1.717, p = 0.041) and DAIR (OR = 8.433, p = 0.003) were risk factors for infection recurrence. CONCLUSIONS: Two-stage exchange remains the most commonly used surgical approach. The reliability of one- and three-exchange needs further evaluation due to the small sample size. Antifungal-loaded cement spacers, and direct intra-articular injections of antimycotics after reimplatation should be strongly considered. Medication is not standardized but rather individualized according to microbiology and the status of patients.


Subject(s)
Antifungal Agents , Mycoses , Prosthesis-Related Infections , Humans , Prosthesis-Related Infections/microbiology , Prosthesis-Related Infections/therapy , Prosthesis-Related Infections/drug therapy , Antifungal Agents/therapeutic use , Antifungal Agents/administration & dosage , Mycoses/drug therapy , Mycoses/epidemiology , Mycoses/microbiology , Mycoses/therapy , Mycoses/surgery , Risk Factors , Treatment Outcome
5.
J Med Virol ; 95(7): e28892, 2023 07.
Article in English | MEDLINE | ID: mdl-37394790

ABSTRACT

Patients with viral infections are at higher risk to acquire bacterial and fungal superinfections associated with a worse prognosis. We explored this critical point in the setting of patients with severe COVID-19 disease. The study included 1911 patients admitted to intensive care unit (ICU) during a 2-year study period (March 2020-March 2022). Of them, 713 (37.3%) were infected with SARS-CoV-2 and 1198 were negative (62.7%). Regression analysis was performed to determine risk factors associated with the presence of bacterial and/or fungal superinfections in SARS-CoV-2 patients and to evaluate predictors of ICU mortality. Of the 713 patients with SARS-CoV-2 infection, 473 (66.3%) had respiratory and/or bloodstream bacterial and/or fungal superinfections, while of the 1198 COVID-19-negative patients, only 369 (30%) showed respiratory and/or bloodstream bacterial and/or fungal superinfections (p < 0.0001). Baseline characteristics of COVID-19 patients included a median age of 66 (interquartile range [IQR], 58-73), a predominance of males (72.7%), and the presence of a BMI higher than 24 (median 26; IQR, 24.5-30.4). Seventy-four percent (527, 73.9%) had one or more comorbidities and 135 (18.9%) of them had received previous antibiotic therapy. Furthermore, most of them (473, 66.3%) exhibited severe radiological pictures and needed invasive mechanical ventilation. Multivariate logistic regression analysis showed that 1 unit increment in BMI rises the risk of bacterial and/or fungal superinfections acquisition by 3% and 1-day increment in ICU stays rises the risk of bacterial and/or fungal superinfections acquisition by 11%. Furthermore, 1-day increment in mechanical ventilation rises the risk of bacterial and/or fungal superinfection acquisition by 2.7 times. Furthermore, patients with both bacterial and fungal infections had a significantly higher mortality rate than patients without superinfections (45.8% vs. 26.2%, p < 0.0001). Therefore, bacterial and fungal superinfections are frequent in COVID-19 patients admitted to ICU and their presence is associated with a worse outcome. This is an important consideration for targeted therapies in critically ill SARS-CoV-2 infected patients to improve their clinical course.


Subject(s)
Bacterial Infections , COVID-19 , Coinfection , Mycoses , SARS-CoV-2 , Aged , Female , Humans , Male , Middle Aged , Bacterial Infections/epidemiology , Bacterial Infections/mortality , Bacterial Infections/therapy , COVID-19/complications , COVID-19/mortality , COVID-19/therapy , Intensive Care Units , Mycoses/epidemiology , Mycoses/mortality , Mycoses/therapy , Patient Acuity , Retrospective Studies , Treatment Outcome , SARS-CoV-2/physiology
6.
Microb Cell Fact ; 22(1): 50, 2023 Mar 13.
Article in English | MEDLINE | ID: mdl-36915090

ABSTRACT

BACKGROUND: The lipopeptide herbicolin A (HA) secreted by the biocontrol agent Pantoea agglomerans ZJU23 is a promising antifungal drug to combat fungal pathogens by targeting lipid rafts, both in agricultural and clinical settings. Improvement of HA production would be of great significance in promoting its commercialization. This study aims to enhance the HA production in ZJU23 by combining fermentation optimization and strain engineering. RESULTS: Based on the results in the single-factor experiments, corn steep liquor, temperature and initial pH were identified as the significant affecting factors by the Plackett-Burman design. The fermentation medium and conditions were further optimized using the Box-Behnken response surface method, and the HA production of the wild type strain ZJU23 was improved from ~ 87 mg/mL in King's B medium to ~ 211 mg/mL in HA induction (HAI) medium. A transposon library was constructed in ZJU23 to screen for mutants with higher HA production, and two transcriptional repressors for HA biosynthesis, LrhA and PurR, were identified. Disruption of the LrhA gene led to increased mRNA expression of HA biosynthetic genes, and subsequently improved about twofold HA production. Finally, the HA production reached ~ 471 mg/mL in the ΔLrhA mutant under optimized fermentation conditions, which is about 5.4 times higher than before (~ 87 mg/mL). The bacterial suspension of the ΔLrhA mutant fermented in HAI medium significantly enhanced its biocontrol efficacy against gray mold disease and Fusarium crown rot of wheat, showing equivalent control efficacies as the chemical fungicides used in this study. Furthermore, HA was effective against fungicide resistant Botrytis cinerea. Increased HA production substantially improved the control efficacy against gray mold disease caused by a pyrimethanil resistant strain. CONCLUSIONS: This study reveals that the transcriptional repressor LrhA negatively regulates HA biosynthesis and the defined HAI medium is suitable for HA production. These findings provide an extended basis for large-scale production of HA and promote biofungicide development based on ZJU23 and HA in the future.


Subject(s)
Antifungal Agents , Biological Control Agents , Bioreactors , Fermentation , Genetic Engineering , Pantoea , Pantoea/classification , Pantoea/drug effects , Pantoea/genetics , Pantoea/metabolism , Fermentation/drug effects , Fermentation/genetics , Genetic Engineering/methods , Antifungal Agents/metabolism , Biological Control Agents/metabolism , Temperature , Hydrogen-Ion Concentration , Gene Expression Regulation, Bacterial , Culture Media/chemistry , Culture Media/pharmacology , Regression Analysis , Analysis of Variance , Reproducibility of Results , Repressor Proteins/antagonists & inhibitors , Mycoses/prevention & control , Mycoses/therapy , Crops, Agricultural/microbiology , Plant Diseases/microbiology , Plant Diseases/prevention & control , Plant Diseases/therapy , Humans , Animals
7.
Zhonghua Yi Xue Za Zhi ; 103(39): 3077-3082, 2023 Oct 24.
Article in Zh | MEDLINE | ID: mdl-37840178

ABSTRACT

Influenza and coronavirus disease 2019 are independent risk factors for the development of invasive fungal disease (IFD) in critically ill patients in the intensive care unit. IFD, particularly mold infections, have a high mortality rate. The diagnosis and treatment of mold infections is challenging, and early detection and timely treatment are crucial in reducing the mortality of IFD. This review will summarize the latest epidemiology and risk factors for the development of mold infections in critically ill patients, current diagnostic criteria and challenges, as well as the treatment strategies recommended by the international clinical guidelines, aiming to provide some references for the diagnosis and treatment of mold infections in critically ill patients in clinical practice.


Subject(s)
Critical Illness , Mycoses , Humans , Mycoses/diagnosis , Mycoses/therapy , Risk Factors , Intensive Care Units , Early Diagnosis
8.
Nephrology (Carlton) ; 27(1): 97-103, 2022 Jan.
Article in English | MEDLINE | ID: mdl-34390080

ABSTRACT

AIM: Bacterial and fungal infections are serious, life-threatening conditions after kidney transplantation. The development of oral/oesophageal candidiasis after kidney transplantation is not a reported risk factor for subsequent severe infection. This study was performed to investigate the relationship between oral/oesophageal candidiasis after kidney transplantation and the development of subsequent infection requiring hospitalization. METHODS: This retrospective study included 522 consecutive patients who underwent kidney transplantation at Japanese Red Cross Aichi Medical Center Nagoya Daini Hospital from 1 January 2010 to 1 February 2019. Ninety-five percentage of patients were living donor transplant recipients. Visual examination was performed to detect oral candidiasis, beginning immediately after kidney transplantation; upper gastrointestinal endoscopy was performed 8-10 months after kidney transplantation. Twenty-five patients developed candidiasis (Candida-onset group) and 497 did not (non-Candida-onset group). The follow-up periods were 67 (37-86) months in the Candida-onset group and 55 (34-89) months in the non-Candida-onset group. Severe infection was defined as bacterial or fungal infection requiring hospitalization; viral infections were excluded. RESULTS: Severe infection developed in 9/25 (36%) patients in the Candida-onset group and in 77/497 (15%) patients in the non-Candida-onset group (p = .006). Binomial logistic analysis revealed that Candida infection (odds ratio [OR] 2.53, 95% confidence interval [CI] 1.06-6.06; p = .037) and use of rituximab (OR 1.81, 95% CI 1.12-2.93; p = .016) were significant predictors of subsequent severe infection. CONCLUSION: Oral/oesophageal candidiasis is a risk factor for severe infection after kidney transplantation and suggests an over-immunosuppressive state, which should prompt evaluation of immunosuppression.


Subject(s)
Candida/isolation & purification , Candidiasis, Oral , Esophageal Diseases , Kidney Transplantation/adverse effects , Mycoses , Postoperative Complications , Adult , Candidiasis, Oral/diagnosis , Candidiasis, Oral/microbiology , Esophageal Diseases/diagnosis , Esophageal Diseases/microbiology , Female , Hospitalization/statistics & numerical data , Humans , Immunologic Factors/administration & dosage , Immunologic Factors/adverse effects , Immunosuppression Therapy/methods , Immunosuppression Therapy/standards , Japan/epidemiology , Kidney Failure, Chronic/surgery , Kidney Transplantation/methods , Male , Mycoses/diagnosis , Mycoses/etiology , Mycoses/immunology , Mycoses/therapy , Postoperative Complications/diagnosis , Postoperative Complications/immunology , Postoperative Complications/microbiology , Postoperative Complications/therapy , Risk Adjustment , Risk Factors , Rituximab/administration & dosage , Rituximab/adverse effects , Severity of Illness Index
9.
Lancet Oncol ; 22(6): e254-e269, 2021 06.
Article in English | MEDLINE | ID: mdl-33811813

ABSTRACT

Paediatric patients with cancer and those undergoing allogeneic haematopoietic cell transplantation have an increased susceptibility to invasive fungal diseases. In addition to differences in underlying conditions and comorbidities relative to adults, invasive fungal diseases in infants, children, and adolescents are unique in terms of their epidemiology, the validity of current diagnostic methods, the pharmacology and dosing of antifungal agents, and the absence of phase 3 clinical trials to provide data to guide evidence-based interventions. To re-examine the state of knowledge and to further improve invasive fungal disease diagnosis, prevention, and management, the 8th European Conference on Infections in Leukaemia (ECIL-8) reconvened a Paediatric Group to review the literature and to formulate updated recommendations according to the European Society of Clinical Microbiology and Infectious Diseases (ESCMID) and European Confederation of Medical Mycology (ECMM) grading system, which are summarised in this Review.


Subject(s)
Hematopoietic Stem Cell Transplantation/adverse effects , Leukemia/therapy , Mycoses/therapy , Antifungal Agents/therapeutic use , Congresses as Topic , Guidelines as Topic , Humans , Leukemia/complications , Leukemia/epidemiology , Leukemia/microbiology , Mycoses/complications , Mycoses/epidemiology , Mycoses/microbiology , Pediatrics/trends
10.
Lancet Oncol ; 22(6): e270-e280, 2021 06.
Article in English | MEDLINE | ID: mdl-33811814

ABSTRACT

Paediatric patients with cancer and those undergoing haematopoietic cell transplantation are at high risk of bacterial infections. The 8th European Conference on Infections in Leukaemia (ECIL-8) convened a Paediatric Group to review the literature and to formulate recommendations for the use of antibiotics according to the European Society of Clinical Microbiology and Infectious Diseases grading system. The evaluation of antibacterial prophylaxis included mortality, bloodstream infection, febrile neutropenia, emergence of resistance, and adverse effects as endpoints. Initial antibacterial therapy and antibiotic de-escalation or discontinuation focused on patients with a clinically stable condition and without previous infection or colonisation by resistant bacteria, and on patients with a clinically unstable condition or with previous infection or colonisation by resistant bacteria. The final considerations and recommendations of the ECIL-8 Paediatric Group on antibacterial prophylaxis, initial therapy, and de-escalation strategies are summarised in this Policy Review.


Subject(s)
Anti-Bacterial Agents/therapeutic use , Hematopoietic Stem Cell Transplantation/adverse effects , Leukemia/therapy , Mycoses/therapy , Congresses as Topic , Guidelines as Topic , Humans , Leukemia/complications , Leukemia/epidemiology , Leukemia/microbiology , Mycoses/complications , Mycoses/epidemiology , Mycoses/microbiology , Pediatrics/trends
11.
Gastroenterology ; 156(5): 1368-1380.e10, 2019 Apr.
Article in English | MEDLINE | ID: mdl-30552895

ABSTRACT

BACKGROUND & AIMS: Bacterial infections are common and life-threatening in patients with cirrhosis. Little is known about the epidemiology of bacterial infections in different regions. We performed a multicenter prospective intercontinental study to assess the prevalence and outcomes of bacterial and fungal infections in patients with cirrhosis. METHODS: We collected data from 1302 hospitalized patients with cirrhosis and bacterial or fungal infections at 46 centers (15 in Asia, 15 in Europe, 11 in South America, and 5 in North America) from October 2015 through September 2016. We obtained demographic, clinical, microbiology, and treatment data at time of diagnosis of infection and during hospitalization. Patients were followed until death, liver transplantation, or discharge. RESULTS: The global prevalence of multidrug-resistant (MDR) bacteria was 34% (95% confidence interval 31%-37%). The prevalence of MDR bacteria differed significantly among geographic areas, with the greatest prevalence in Asia. Independent risk factors for infection with MDR bacteria were infection in Asia (particularly in India), use of antibiotics in the 3 months before hospitalization, prior health care exposure, and site of infection. Infections caused by MDR bacteria were associated with a lower rate of resolution of infection, a higher incidence of shock and new organ failures, and higher in-hospital mortality than those caused by non-MDR bacteria. Administration of adequate empirical antibiotic treatment was independently associated with improved in-hospital and 28-day survival. CONCLUSIONS: In a worldwide study of hospitalized patients, we found a high prevalence of infection with MDR bacteria in patients with cirrhosis. Differences in the prevalence of MDR bacterial infections in different global regions indicate the need for different empirical antibiotic strategies in different continents and countries. While we await new antibiotics, effort should be made to decrease the spread of MDR bacteria in patients with cirrhosis.


Subject(s)
Bacterial Infections/epidemiology , Global Health , Liver Cirrhosis/epidemiology , Adult , Aged , Anti-Bacterial Agents/therapeutic use , Bacterial Infections/microbiology , Bacterial Infections/mortality , Bacterial Infections/therapy , Cross-Sectional Studies , Drug Resistance, Multiple, Bacterial , Female , Hospital Mortality , Humans , Liver Cirrhosis/microbiology , Liver Cirrhosis/mortality , Liver Cirrhosis/therapy , Liver Transplantation , Male , Middle Aged , Mycoses/epidemiology , Mycoses/microbiology , Mycoses/mortality , Mycoses/therapy , Prevalence , Prognosis , Prospective Studies , Risk Factors , Time Factors
12.
Arch Microbiol ; 202(5): 1231-1240, 2020 Jul.
Article in English | MEDLINE | ID: mdl-32108246

ABSTRACT

During the last few decades, the increase in the incidence of multidrug-resistant (MDR) fungal infections has become an emerging threat to public health. Therefore, it is important to illuminate the usage of alternative therapy to treat MDR fungal infection. This study was carried out to elucidate the usage of plant extract and essential oil, either alone or with other antifungal drugs to treat otitis media caused by MDR fungi. Medicinal plant is a safe and cheap source when compared with chemical antifungal drugs. Twenty-one fungal isolates out of 104 ear swabs from patients suffering from otitis media were characterized using both phenotypic and genotypic methods. The antibiogram typing was used to determine the MDR isolates. The sensitivity of MDR fungal isolates was tested against several plant extracts and essential oils, either alone or with other antifungal drugs. Thyme oil and clove extracts proved to have synergistic effects suggesting their use in the treatment of fungal infections, especially otitis media caused by MDR fungi. The ultrastructure of MDR fungal isolates exhibited a complete destruction post exposure to the used materials when observed under the transmission microscope (TEM). Thyme oil and clove extract were found to be the most effective agents against MDR fungal isolates and they constitute a promising tool for the management of fungal infection causing the otitis media.


Subject(s)
Fungi/drug effects , Mycoses/microbiology , Mycoses/therapy , Oils, Volatile/therapeutic use , Otitis Media/microbiology , Otitis Media/therapy , Plant Extracts/therapeutic use , Antifungal Agents/pharmacology , Fungi/ultrastructure , Humans , Microbial Sensitivity Tests , Oils, Volatile/pharmacology , Plant Extracts/pharmacology
13.
J Surg Res ; 256: 187-192, 2020 12.
Article in English | MEDLINE | ID: mdl-32711174

ABSTRACT

BACKGROUND: Necrotizing soft tissue infections (NSTIs) are life-threatening surgical emergencies associated with high morbidity and mortality. Fungal NSTIs are considered rare and have been largely understudied. The purpose of this study was to study the impact of fungal NSTIs and antifungal therapy on mortality after NSTIs. METHODS: A retrospective chart review was performed on patients with NSTIs from 2012 to 2018. Patient baseline characteristics, microbiologic data, antimicrobial therapy, and clinical outcomes were collected. Patients were excluded if they had comfort care before excision. The primary outcome measured was in-hospital mortality. RESULTS: A total of 215 patients met study criteria with a fungal species identified in 29 patients (13.5%). The most prevalent fungal organism was Candida tropicalis (n = 11). Fungal NSTIs were more prevalent in patients taking immunosuppressive medications (17.2% versus 3.2%, P = 0.01). A fungal NSTI was significantly associated with in-hospital mortality (odds ratio, 3.13; 95% confidence interval, 1.16-8.40; P = 0.02). Furthermore, fungal NSTI patients had longer lengths of stay (32 d [interquartile range, 16-53] versus 19 d [interquartile range, 11-31], P < 0.01), more likely to require initiation of renal replacement therapy (24.1% versus 8.6%, P = 0.02), and more likely to require mechanical ventilation (64.5% versus 42.0%, P = 0.02). Initiation of antifungals was associated with a significantly lower rate of in-hospital mortality (6.7% versus 57.1%, P = 0.01). CONCLUSIONS: Fungal NSTIs are more common in patients taking immunosuppressive medications and are significantly associated with in-hospital mortality. Antifungal therapy is associated with decreased in-hospital mortality in those with fungal NSTIs. Consideration should be given to adding antifungals in empiric treatment regimens, especially in those taking immunosuppressive medications.


Subject(s)
Antifungal Agents/therapeutic use , Mycoses/therapy , Soft Tissue Infections/therapy , Surgical Procedures, Operative , Adult , Combined Modality Therapy/methods , Combined Modality Therapy/statistics & numerical data , Female , Fungi/isolation & purification , Hospital Mortality , Humans , Length of Stay/statistics & numerical data , Male , Middle Aged , Mycoses/complications , Mycoses/microbiology , Mycoses/mortality , Necrosis/microbiology , Necrosis/mortality , Necrosis/therapy , Renal Replacement Therapy/statistics & numerical data , Respiration, Artificial/statistics & numerical data , Retrospective Studies , Risk Factors , Soft Tissue Infections/complications , Soft Tissue Infections/microbiology , Soft Tissue Infections/mortality , Treatment Outcome
14.
Mycoses ; 63(2): 162-171, 2020 Feb.
Article in English | MEDLINE | ID: mdl-31715052

ABSTRACT

BACKGROUND: Invasive fungal diseases (IFD) are associated with significant treatment-related costs in patients with haematological malignancies (HM). OBJECTIVES: The objectives of this study were to characterise the gross and attributable hospitalisation costs of a variety of IFD in patients with HM by linking state-wide hospital administrative and costing datasets. PATIENTS/METHODS: We linked the Victorian Admitted Episodes Dataset, Victorian Cancer Registry and the Victorian Cost Data Collection from 1 July 2009 to 30 June 2015. IFD cases and uninfected controls were matched 1:1 based on age within ten years, same underlying HM and length of stay prior to IFD diagnosis. The cost difference between surviving cases and controls, indexed to 2019 Australian dollars (AUD) calculated twelve months from IFD diagnosis, was determined using Poisson and negative binomial regression (NBR). RESULTS: From 334 matched pairs, the gross hospitalisation cost of cases was AUD$67 277 compared to AUD$51 158 among uninfected controls, associated with an excess median hospitalisation cost of AUD$16 119 (P < .001) attributable to IFD, approximating to USD$11 362 and €10 154 at purchasing power parity. Median attributable costs were highest for patients with invasive aspergillosis (AUD$55 642; P < .001) and mucormycosis (AUD$51 272; P = .043) followed by invasive candidiasis AUD$24 572 (P < .001). No change in median excess attributable costs was observed over the study period (P = .90) Analyses by NBR revealed a 1.36-fold increase (P < .001) in total hospitalisation costs among cases as compared to controls twelve months from IFD diagnosis. CONCLUSION: Invasive aspergillosis and mucormycosis have high attributable hospitalisation costs but the overall excess IFD cost of AUD$16 119 is modest, potentially reflecting missed or miscoded fungal episodes arguing for better quality surveillance data at hospital level.


Subject(s)
Hematologic Neoplasms/complications , Hospitalization/economics , Mycoses/economics , Adolescent , Adult , Aged , Aspergillosis/economics , Case-Control Studies , Cohort Studies , Databases, Factual , Female , Health Care Costs , Humans , Male , Middle Aged , Mucormycosis/economics , Mycoses/complications , Mycoses/therapy , Registries , Retrospective Studies , Victoria , Young Adult
15.
Mycoses ; 63(1): 4-20, 2020 Jan.
Article in English | MEDLINE | ID: mdl-31597205

ABSTRACT

Due to their physiological and biological characteristics, numerous fungi are potentially emerging pathogens. Active dynamicity of fungal pathogens causes life-threatening infections annually impose high costs to the health systems. Although immune responses play crucial roles in controlling the fate of fungal infections, immunocompromised patients are at high risk with high mortality. Tuning the immune response against fungal infections might be an effective strategy for controlling and reducing the pathological damages. MicroRNAs (miRNAs) are known as the master regulators of immune response. These single-stranded tuners (18-23 bp non-coding RNAs) are endogenously expressed by all metazoan eukaryotes and have emerged as the master gene expression controllers of at least 30% human genes. In this review article, following the review of biology and physiology (biogenesis and mechanism of actions) of miRNAs and immune response against fungal infections, the interactions between them were scrutinised. In conclusion, miRNAs might be considered as one of the potential goals in immunotherapy for fungal infections. Undoubtedly, advanced studies in this field, further identifying of miRNA roles in governing the immune response, pave the way for inclusion of miRNA-related immunotherapeutic in the treatment of life-threatening fungal infections.


Subject(s)
Host-Pathogen Interactions/immunology , MicroRNAs , Mycoses , AIDS-Related Opportunistic Infections/immunology , AIDS-Related Opportunistic Infections/microbiology , AIDS-Related Opportunistic Infections/therapy , Animals , Aspergillosis/immunology , Aspergillosis/metabolism , Candidiasis/immunology , Candidiasis/metabolism , Coinfection/immunology , Coinfection/metabolism , Coinfection/microbiology , Cryptococcosis/immunology , Cryptococcosis/metabolism , Gene Expression Profiling , Gene Expression Regulation , Humans , Immunotherapy , MicroRNAs/biosynthesis , MicroRNAs/immunology , MicroRNAs/metabolism , MicroRNAs/therapeutic use , Mycoses/immunology , Mycoses/therapy , Paracoccidioidomycosis/immunology , Paracoccidioidomycosis/metabolism , Signal Transduction/genetics
16.
Mycopathologia ; 185(2): 207-231, 2020 Apr.
Article in English | MEDLINE | ID: mdl-31894501

ABSTRACT

Fungal disease is an increasingly recognised global clinical challenge associated with high mortality. Early diagnosis of fungal infection remains problematic due to the poor sensitivity and specificity of current diagnostic modalities. Advances in sequencing technologies hold promise in addressing these shortcomings and for improved fungal detection and identification. To translate such emerging approaches into mainstream clinical care will require refinement of current sequencing and analytical platforms, ensuring standardisation and consistency through robust clinical benchmarking and its validation across a range of patient populations. In this state-of-the-art review, we discuss current diagnostic and therapeutic challenges associated with fungal disease and provide key examples where the application of sequencing technologies has potential diagnostic application in assessing the human 'mycobiome'. We assess how ready access to fungal sequencing may be exploited in broadening our insight into host-fungal interaction, providing scope for clinical diagnostics and the translation of emerging mycobiome research into clinical practice.


Subject(s)
Fungi , Mycobiome , Mycoses , Computational Biology , Fungi/genetics , Fungi/pathogenicity , High-Throughput Nucleotide Sequencing , Host Microbial Interactions , Humans , Metagenomics , Mycoses/epidemiology , Mycoses/etiology , Mycoses/therapy , Mycoses/transmission , Pathology, Molecular
17.
Mycopathologia ; 185(4): 599-606, 2020 Aug.
Article in English | MEDLINE | ID: mdl-32737747

ABSTRACT

Coronavirus disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has been sweeping across the globe. Based on a retrospective analysis of SARS and influenza data from China and worldwide, we surmise that the fungal co-infections associated with global COVID-19 might be missed or misdiagnosed. Although there are few publications, COVID-19 patients, especially severely ill or immunocompromised, have a higher probability of suffering from invasive mycoses. Aspergillus and Candida infections in COVID-19 patients will require early detection by a comprehensive diagnostic intervention (histopathology, direct microscopic examination, culture, (1,3)-ß-D-glucan, galactomannan, and PCR-based assays) to ensure effective treatments. We suggest it is prudent to assess the risk factors, the types of invasive mycosis, the strengths and limitations of diagnostic methods, clinical settings, and the need for standard or individualized treatment in COVID-19 patients. We provide a clinical flow diagram to assist the clinicians and laboratory experts in the management of aspergillosis, candidiasis, mucormycosis, or cryptococcosis as co-morbidities in COVID-19 patients.


Subject(s)
Coronavirus Infections/complications , Mycoses/complications , Pneumonia, Viral/complications , COVID-19 , Candidiasis, Invasive/complications , Candidiasis, Invasive/diagnosis , Candidiasis, Invasive/therapy , China , Coronavirus Infections/diagnosis , Cryptococcosis/complications , Cryptococcosis/diagnosis , Cryptococcosis/therapy , Humans , Invasive Pulmonary Aspergillosis/complications , Invasive Pulmonary Aspergillosis/diagnosis , Invasive Pulmonary Aspergillosis/therapy , Mucormycosis/complications , Mucormycosis/diagnosis , Mucormycosis/therapy , Mycoses/diagnosis , Mycoses/therapy , Pandemics , Pneumonia, Viral/diagnosis
18.
Orbit ; 39(1): 45-47, 2020 Feb.
Article in English | MEDLINE | ID: mdl-31169421

ABSTRACT

Allergic fungal sinusitis (AFS) arises from a host hypersensitivity reaction to fungi residing within the sino-nasal tract. Computed tomography imaging may show heterogenous sinus opacification with bony erosion and expansion into the orbits. With advanced orbital involvement there is a risk of optic neuropathy and irreversible vision loss. We present a patient with AFS who presented with bilateral proptosis and early optic neuropathy. Radiologically, there was evidence of bony erosion and orbital wall compression. Following oral corticosteroids and full-house endoscopic sinus surgery, these changes reversed considerably. This case shows that bony and anatomical orbital changes from AFS are reversible with adequate surgical treatment.


Subject(s)
Endoscopy/methods , Mycoses/therapy , Orbital Diseases/pathology , Orbital Diseases/therapy , Sinusitis/diagnostic imaging , Sinusitis/surgery , Adult , Female , Humans , Hypersensitivity/diagnosis , Hypersensitivity/therapy , Mycoses/diagnostic imaging , Nasal Obstruction/diagnosis , Nasal Obstruction/etiology , Nasal Polyps/diagnosis , Nasal Polyps/etiology , Orbital Diseases/diagnostic imaging , Prednisone/therapeutic use , Prognosis , Risk Assessment , Sinusitis/pathology , Tomography, X-Ray Computed/methods , Treatment Outcome
19.
Curr Opin Oncol ; 31(6): 574-590, 2019 11.
Article in English | MEDLINE | ID: mdl-31593976

ABSTRACT

PURPOSE OF REVIEW: Viral and fungal infections cause significant morbidity and mortality following hematopoietic stem-cell transplantation (HSCT), primarily due to the prolonged and complex immunodeficient state that results from conditioning chemo-radiotherapy and subsequent prophylaxis of graft vs. host disease. Although currently available antimicrobial pharmacotherapies have demonstrated short-term efficacy, their toxicities often preclude long-term use, and cessation if frequently associated with recurrent infection. Adoptive cell therapy (ACT) offers the potential to more rapidly reconstitute antimicrobial immune responses in the posttransplant setting. RECENT FINDINGS: Traditional approaches to manufacture of adoptive T-cell therapies are time consuming and limited to single pathogen specificity. Recent advances in the understanding of immunogenic epitopes, improved methods for pathogen-specific T-cell isolation and cultureware technologies is allowing for rapid generation of ACTs for clinical use. SUMMARY: The current review summarizes the potential infectious targets and manufacturing methodologies for ACTs and contrasts their clinical efficacy and safety to currently available pharmacotherapies for patients recovering after HSCT.


Subject(s)
Hematopoietic Stem Cell Transplantation/adverse effects , Hematopoietic Stem Cell Transplantation/methods , Immunotherapy, Adoptive/methods , Mycoses/therapy , Postoperative Complications/microbiology , T-Lymphocytes/transplantation , Virus Diseases/therapy , Humans , Mycoses/etiology , Mycoses/immunology , Postoperative Complications/etiology , Postoperative Complications/immunology , Postoperative Complications/therapy , T-Lymphocytes/immunology , Virus Diseases/etiology , Virus Diseases/immunology
20.
Annu Rev Biomed Eng ; 20: 95-118, 2018 06 04.
Article in English | MEDLINE | ID: mdl-29345976

ABSTRACT

Cellular immunotherapy holds great promise for the treatment of human disease. Clinical evidence suggests that T cell immunotherapies have the potential to combat cancers that evade traditional immunotherapy. Despite promising results, adverse effects leading to fatalities have left scientists seeking tighter control over these therapies, which is reflected in the growing body of synthetic biology literature focused on developing tightly controlled, context-independent parts. In addition, researchers are adapting these tools for other uses, such as for the treatment of autoimmune disease, HIV infection, and fungal interactions. We review this body of work and devote special attention to approaches that may lend themselves to the development of an "ideal" therapy: one that is safe, efficient, and easy to manufacture. We conclude with a look toward the future of immunotherapy: how synthetic biology can shift the paradigm from the treatment of disease to a focus on wellness and human health as a whole.


Subject(s)
Cell- and Tissue-Based Therapy , Immunotherapy/methods , Synthetic Biology , Autoimmune Diseases/therapy , HIV Infections/therapy , Humans , Immunologic Factors/therapeutic use , Mycoses/therapy , Neoplasms/therapy , Patient Safety , T-Lymphocytes/immunology
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