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1.
Proc Natl Acad Sci U S A ; 118(28)2021 07 13.
Article in English | MEDLINE | ID: mdl-34244442

ABSTRACT

Here, we report that important regulators of cilia formation and ciliary compartment-directed protein transport function in secretion polarity. Mutations in cilia genes cep290 and bbs2, involved in human ciliopathies, affect apical secretion of Cochlin, a major otolith component and a determinant of calcium carbonate crystallization form. We show that Cochlin, defective in human auditory and vestibular disorder, DFNA9, is secreted from small specialized regions of vestibular system epithelia. Cells of these regions secrete Cochlin both apically into the ear lumen and basally into the basal lamina. Basally secreted Cochlin diffuses along the basal surface of vestibular epithelia, while apically secreted Cochlin is incorporated into the otolith. Mutations in a subset of ciliopathy genes lead to defects in Cochlin apical secretion, causing abnormal otolith crystallization and behavioral defects. This study reveals a class of ciliary proteins that are important for the polarity of secretion and delineate a secretory pathway that regulates biomineralization.


Subject(s)
Ciliopathies/genetics , Otolithic Membrane/metabolism , Zebrafish Proteins/metabolism , Zebrafish/genetics , Amino Acid Sequence , Animals , Bardet-Biedl Syndrome/genetics , Base Sequence , Cilia/metabolism , Crystallization , Epistasis, Genetic , Extracellular Matrix Proteins/genetics , Gene Expression Regulation, Developmental , Homozygote , Mutation/genetics , Phenotype , Zebrafish Proteins/genetics
2.
J Exp Biol ; 226(13)2023 07 01.
Article in English | MEDLINE | ID: mdl-37326209

ABSTRACT

Ecologists have long been interested in relevant techniques to track the field movement patterns of fish. The elemental composition of otoliths represents a permanent record of the growing habitats experienced by a fish throughout its lifetime and is increasingly used in the literature. The lack of a predictive and mechanistic understanding of the individual kinematics underlying ion incorporation/depletion limits our fine-scale temporal interpretation of the chemical signal recorded in the otolith. In particular, the rate at which elements are incorporated into otoliths is hypothesized to depend on fish physiology. However, to date, time lags have mostly been quantified on a population scale. Here, we report results from controlled experiments (translocation and artificially enriched environment) on individual trace element incorporation/depletion rates in Salmo trutta (Salmonidae). We reported significant lags (i.e. weeks to months) between changes in water chemistry and the subsequent change in otolith composition and highlighted substantial inter-individual variations in the timing and magnitude of Sr/Ca and Ba/Ca responses. These differences are partially linked to the energetic status (i.e. metabolic rate) of the individuals. It therefore appears that individuals with the highest metabolic rate are more likely to record detailed (i.e. brief) temporal changes than individuals having lower metabolic values. The time taken for environmental changes to be reflected in the growing otolith thus can no longer be assumed to remain a constant within populations. Results from the current study are a step towards the fine reconstruction of environmental histories in dynamic environments.


Subject(s)
Fishes , Otolithic Membrane , Animals , Otolithic Membrane/metabolism , Microchemistry , Fishes/physiology , Water/metabolism , Ecosystem
3.
J Cell Physiol ; 237(6): 2690-2702, 2022 06.
Article in English | MEDLINE | ID: mdl-35403704

ABSTRACT

E2f4 is a multifunctional transcription factor that is essential for many cellular processes. Although the role of E2f4 during cell cycle progression has been investigated in great detail, less is known about E2f4 during embryonic development. Here, we investigated the role of E2f4 during zebrafish development. Zebrafish e2f4 mutants displayed ectopic otolith formation due to abnormal ciliary beating in the otic vesicle. The beating defects of motile cilia were caused by abnormal expression of ciliary motility genes. The expression of two genes, lrrc23 and ccdc151, were significantly decreased in the absence of E2f4. In addition to that, e2f4 mutants also displayed growth retardation both in the body length and body weight and mostly died at around 6 months old. Although food intake was normal in the mutants, we found that the microvilli of the intestinal epithelia were significantly affected in the mutants. Finally, the intestinal epithelia of e2f4 mutants also displayed reduced cell proliferation, together with an increased level of cell apoptosis. Our data suggested a tissue-specific role of E2f4 during zebrafish development, which is distinct from the traditional views of this protein as a transcription repressor.


Subject(s)
E2F4 Transcription Factor/metabolism , Zebrafish Proteins , Zebrafish , Animals , Cilia/genetics , Cilia/metabolism , Intestines , Otolithic Membrane/metabolism , Transcription Factors/metabolism , Zebrafish Proteins/genetics , Zebrafish Proteins/metabolism
4.
Chemistry ; 25(55): 12740-12750, 2019 Oct 01.
Article in English | MEDLINE | ID: mdl-31241793

ABSTRACT

The biological mediation of mineral formation (biomineralization) is realized through diverse organic macromolecules that guide this process in a spatial and temporal manner. Although the role of these molecules in biomineralization is being gradually revealed, the molecular basis of their regulatory function is still poorly understood. In this study, the incorporation and distribution of the model intrinsically disordered starmaker-like (Stm-l) protein, which is active in fish otoliths biomineralization, within calcium carbonate crystals, is revealed. Stm-l promotes crystal nucleation and anisotropic tailoring of crystal morphology. Intracrystalline incorporation of Stm-l protein unexpectedly results in shrinkage (and not expansion, as commonly described in biomineral and bioinspired crystals) of the crystal lattice volume, which is described herein, for the first time, for bioinspired mineralization. A ring pattern was observed in crystals grown for 48 h; this was composed of a protein-enriched region flanked by protein-depleted regions. It can be explained as a result of the Ostwald-like ripening process and intrinsic properties of Stm-l, and bears some analogy to the daily growth layers of the otolith.


Subject(s)
Calcium Carbonate/chemistry , Minerals/chemistry , Otolithic Membrane/metabolism , Recombinant Proteins/chemistry , Animals , Fishes , Otolithic Membrane/chemistry , Recombinant Proteins/metabolism
5.
FASEB J ; 32(7): 3984-3992, 2018 07.
Article in English | MEDLINE | ID: mdl-29475374

ABSTRACT

Radial spokes are structurally conserved, macromolecular complexes that are essential for the motility of 9 + 2 motile cilia. In Chlamydomonas species, mutations in radial spoke proteins result in ciliary motility defects. However, little is known about the function of radial spoke proteins during embryonic development. Here, we investigated the role of a novel radial spoke protein, leucine-rich repeat containing protein 23 (Lrrc23), during zebrafish embryonic development. Mutations in lrrc23 resulted in a selective otolith formation defect during early ear development. Similar otolith defects were also present in the radial spoke head 3 homolog ( rsph3) and radial spoke head 4 homolog A ( rsph4a) radial spoke mutants. Notably, the radial spoke protein mutations specifically affected ciliary motility in the otic vesicle (OV), whereas motile cilia in other organs functioned normally. Via high-speed video microscopy, we found that motile cilia formation was stochastic and transient in the OV. Importantly, all the motile cilia in the OV beat circularly, in contrast to the planar beating pattern of typical 9 + 2 motile cilia. We identified the key time frame for motile cilia formation during OV development. Finally, we showed that the functions of radial spoke proteins were conserved between zebrafish and Tetrahymena. Together, our results suggest that radial spoke proteins are essential for ciliary motility in the OV and that radial spoke-regulated OV motile cilia represent a unique type of cilia during early zebrafish embryonic development.-Han, X., Xie, H., Wang, Y., Zhao, C. Radial spoke proteins regulate otolith formation during early zebrafish development.


Subject(s)
Cilia/metabolism , Cytoskeletal Proteins/metabolism , Otolithic Membrane/metabolism , Zebrafish Proteins/metabolism , Animals , Cytoskeletal Proteins/genetics , Mutation , Otolithic Membrane/cytology , Otolithic Membrane/growth & development , Protozoan Proteins/metabolism , Tetrahymena , Zebrafish , Zebrafish Proteins/genetics
6.
Arch Toxicol ; 93(11): 3219-3228, 2019 11.
Article in English | MEDLINE | ID: mdl-31576414

ABSTRACT

A previous study showed that people living in urban areas are generally exposed to low-frequency noise (LFN) with frequencies below 100 Hz and sound levels of 60-110 dB in daily and occupational environments. Exposure to LFN has been shown to affect balance in humans and mice. However, there is no information about prevention of LFN-mediated imbalance because of a lack of information about the target region based on health risk assessment of LFN exposure. Here, we show that acute exposure to LFN at 100 Hz, 95 dB, but not at 85 dB or 90 dB, for only 1 h caused imbalance in mice. The exposed mice also had decreased cervical vestibular-evoked myogenic potential (cVEMP) with impaired activity of vestibular hair cells. Since imbalance in the exposed mice was irreversible, morphological damage in the vestibules of the exposed mice was further examined. The exposed mice had breakage of the otoconial membrane in the vestibule. LFN-mediated imbalance and breakage of the otoconial membrane in mice were rescued by overexpression of a stress-reactive molecular chaperone, heat shock protein 70 (Hsp70), which has been shown to be induced by exposure of mice to 12 h per day of LFN at 95 dB for 5 days. Taken together, the results of this study demonstrate that acute exposure to LFN at 100 Hz, 95 dB for only 1 h caused irreversible imbalance in mice with structural damage of the otoconial membrane as the target region for LFN-mediated imbalance, which can be rescued by Hsp70.


Subject(s)
Environmental Exposure/adverse effects , Evoked Potentials, Auditory/physiology , HSP70 Heat-Shock Proteins/metabolism , Noise/adverse effects , Sensation Disorders/metabolism , Vestibule, Labyrinth/metabolism , Acoustic Stimulation , Animals , Environmental Exposure/analysis , HSP70 Heat-Shock Proteins/genetics , Mice , Mice, Inbred ICR , Mice, Transgenic , Otolithic Membrane/metabolism , Postural Balance/physiology , Sensation Disorders/physiopathology
7.
Development ; 142(6): 1137-45, 2015 Mar 15.
Article in English | MEDLINE | ID: mdl-25758224

ABSTRACT

Otoliths are biomineralised structures important for balance and hearing in fish. Their counterparts in the mammalian inner ear, otoconia, have a primarily vestibular function. Otoliths and otoconia form over sensory maculae and are attached to the otolithic membrane, a gelatinous extracellular matrix that provides a physical coupling between the otolith and the underlying sensory epithelium. In this study, we have identified two proteins required for otolith tethering in the zebrafish ear, and propose that there are at least two stages to this process: seeding and maintenance. The initial seeding step, in which otolith precursor particles tether directly to the tips of hair cell kinocilia, fails to occur in the einstein (eis) mutant. The gene disrupted in eis is otogelin (otog); mutations in the human OTOG gene have recently been identified as causative for deafness and vestibular dysfunction (DFNB18B). At later larval stages, maintenance of otolith tethering to the saccular macula is dependent on tectorin alpha (tecta) function, which is disrupted in the rolling stones (rst) mutant. α-Tectorin (Tecta) is a major constituent of the tectorial membrane in the mammalian cochlea. Mutations in the human TECTA gene can cause either dominant (DFNA8/12) or recessive (DFNB21) forms of deafness. Our findings indicate that the composition of extracellular otic membranes is highly conserved between mammals and fish, reinforcing the view that the zebrafish is an excellent model system for the study of deafness and vestibular disease.


Subject(s)
Deafness/genetics , Extracellular Matrix Proteins/metabolism , Membrane Glycoproteins/metabolism , Otolithic Membrane/embryology , Otolithic Membrane/metabolism , Vestibular Diseases/genetics , Zebrafish Proteins/metabolism , Animals , Cloning, Molecular , Extracellular Matrix Proteins/genetics , Fluorescence , Humans , Immunohistochemistry , In Situ Hybridization , Membrane Glycoproteins/genetics , Microscopy, Confocal , Phalloidine , Zebrafish , Zebrafish Proteins/genetics
8.
Rapid Commun Mass Spectrom ; 32(22): 1905-1910, 2018 Nov 30.
Article in English | MEDLINE | ID: mdl-30085368

ABSTRACT

RATIONALE: Otoliths are usually used to estimate the age of fish and the chemical composition such as nitrogen stable isotope ratios (δ15 N values) may record environmental information and ecological role of the fish. However, the isotopic fractionation of δ15 N values between diets and otoliths has rarely been investigated and remains unclear. METHODS: Nitrogen isotopic fractionation between five different diets (δ15 Ndiet values) and otoliths (δ15 Noto values) were elucidated in tilapia Oreochromis mossambica reared in controlled feeding experiments. The otoliths were dissolved with hydrogen chloride and peroxodisulfate was used to oxidize the total organic materials to nitrate, which was further converted into N2 O gas by denitrification bacteria before the measurement of δ15 Noto values by isotope ratio mass spectrometry. The δ15 N values of muscles, gills, scales and livers of the tilapias were also measured by isotope ratio mass spectrometry. RESULTS: The peroxodisulfate oxidation-bacterial conversion method reduced the minimum mass of the otoliths required for analysis to as low as 2 mg, unlike past methods, which have required masses of 8-155 mg. The δ15 Noto values were not significantly different from the δ15 Ndiet values of the five diets. Furthermore, the somatic growth rate had no effect on the δ15 Noto values. Nevertheless, the δ15 N values of metabolically active tissues were significantly different from each other and higher than the δ15 Ndiet values, due to the deamination of these tissues. CONCLUSIONS: These results suggest that diet was the main source of amino acids for the otolith organic matrix and there was no biochemical transamination during the assimilation of dietary amino acids to otoliths. The δ15 Noto value can be used as a proxy of nitrogen sources of fishes and may have potential application in ecological studies such as the detection of diet shift, migration, trophic levels and environmental changes experienced by the fish population.


Subject(s)
Animal Feed , Mass Spectrometry/methods , Nitrogen Isotopes/analysis , Otolithic Membrane/metabolism , Tilapia/metabolism , Animal Feed/analysis , Animals , Chemical Fractionation , Diet , Nitrogen Isotopes/metabolism , Otolithic Membrane/chemistry , Otolithic Membrane/growth & development , Oxidation-Reduction , Peroxides/chemistry , Tilapia/growth & development
9.
Rapid Commun Mass Spectrom ; 32(15): 1250-1256, 2018 Aug 15.
Article in English | MEDLINE | ID: mdl-29781092

ABSTRACT

RATIONALE: Nitrogen and carbon stable isotope ratios (δ15 N and δ13 C values) of carbonate-bound organic materials in otoliths can provide information to address the biological and ecological functions of fish. Correct interpretation of otolith δ15 N and δ13 C profiles requires knowledge of the metabolic routes of nitrogen and carbon isotopes. However, the isotopic assimilation of δ15 N and δ13 C compositions from diets to otoliths has rarely been investigated. METHODS: This study traced the daily nitrogen and carbon isotopic assimilation between diets and otoliths using nanoscale secondary ion mass spectrometry (NanoSIMS). Isotopically labeled algae (Tetraselmis chui) were fed to tilapia (Oreochromis niloticus) for 14-17 days. NanoSIMS and conventional isotope ratio mass spectrometry were used to measure δ15 N and δ13 C variations in the otoliths and fish muscle, respectively. RESULTS: Otolith δ15 N values abruptly surged from natural abundance levels by 1000-2300‰ after the fish ate 15 N-spiked algae with δ15 N values of approximately 2200‰. However, the δ15 N values of fish muscle increased to only approximately 500‰ at the end of the feeding experiment. Much higher δ15 N values (3700-14 000‰) and moderate δ13 C values (60-200‰) were detected in the otoliths after the tilapia ate 15 N- and 13 C-spiked algae with a δ15 N value of 36667‰ and a δ13 C value of 272‰. Mapping analysis showed sub-micrometer-scale distribution of 15 N embedded in the otolith growth increments with a low-to-high δ15 N signal after the tilapia shifted diets from non-spiked to 15 N-labeled algae. CONCLUSIONS: These results suggest that otolith nitrogen and carbon isotopes from food were directly assimilated on the same day. Food is the major and in some cases only source of otolith nitrogen isotopes but makes only a partial contribution to otolith carbon isotopes. Therefore, the δ15 N values recorded in the sclerochronological layers of the otoliths can be used to determine the trophic levels, food sources and diet changes of fish.


Subject(s)
Carbon Isotopes/analysis , Nitrogen Isotopes/analysis , Otolithic Membrane/chemistry , Spectrometry, Mass, Secondary Ion/methods , Tilapia/metabolism , Animals , Carbon Isotopes/metabolism , Diet , Muscles/chemistry , Muscles/metabolism , Nanotechnology , Nitrogen Isotopes/metabolism , Otolithic Membrane/metabolism
10.
Rapid Commun Mass Spectrom ; 32(17): 1557-1564, 2018 Sep 15.
Article in English | MEDLINE | ID: mdl-29874707

ABSTRACT

RATIONALE: Otolith δ18 O and δ13 C values have been used extensively to reconstruct thermal and diet histories. Researchers have suggested that individual growth rate and size may have an effect on otolith isotope ratios and subsequently confound otolith-based thermal and diet reconstructions. As few explicit tests of the effect on fish in freshwater environments exist, here we determine experimentally the potential for related growth rate and size effects on otolith δ18 O and δ13 C values. METHODS: Fifty Arctic charr were raised in identical conditions for two years after which their otoliths were removed and analyzed for their δ18 O and δ13 C values. The potential effects of final length and the Thermal Growth Coefficient (TGC) on otolith isotope ratios were tested using correlation and regression analysis to determine if significant effects were present and to quantify effects when present. RESULTS: The analyses indicated that TGC and size had significant and similar positive non-linear relationships with δ13 C values and explained 35% and 42% of the variability, respectively. Conversely, both TGC and size were found to have no significant correlation with otolith δ18 O values. There was no significant correlation between δ18 O and δ13 C values. CONCLUSIONS: The investigation indicated the presence of linked growth rate and size effects on otolith δ13 C values, the nature of which requires further study. Otolith δ18 O values were unaffected by individual growth rate and size, confirming the applicability of these values to thermal reconstructions of fish habitat.


Subject(s)
Carbon Isotopes/analysis , Otolithic Membrane/chemistry , Oxygen Isotopes/analysis , Trout/growth & development , Animals , Arctic Regions , Carbon Isotopes/metabolism , Ecosystem , Female , Male , Mass Spectrometry , Otolithic Membrane/growth & development , Otolithic Membrane/metabolism , Oxygen Isotopes/metabolism , Trout/metabolism
11.
J Biol Phys ; 44(3): 471-482, 2018 09.
Article in English | MEDLINE | ID: mdl-29850983

ABSTRACT

The Mn2+ concentrations in the sagittae otoliths of 12 fish families (and 19 species) that co-occur in a coastal area of southeastern Brazil (~21°S) were quantified using electron paramagnetic resonance (EPR). Inferences were made about the relationship between fish habitat and trace element incorporation. Inferences were made on the relationship between trace element concentration and otolith shape. The differences in Mn2+ concentrations among the species suggest that habitat (and feeding habits) might drive the incorporation of this trace element into fish otoliths, with higher values in bottom-associated fish species than in surface-associated species. In surface-associated fish species, the correlation between trace element concentrations and otolith shape was stronger than in bottom-associated species. Thus, while the Mn bioavailability in a fish's habitat, especially from feeding resources, is a local driving influence of trace element incorporation in sagittae otoliths, species-specific requirements also have an influence. Quantitative EPR is a non-destructive technique that is very useful when the available samples cannot be damaged, like with otolith collections.


Subject(s)
Electron Spin Resonance Spectroscopy/methods , Environmental Monitoring/methods , Fishes/metabolism , Manganese/analysis , Otolithic Membrane/metabolism , Trace Elements/analysis , Animals , Fishes/physiology , Manganese/metabolism , Otolithic Membrane/chemistry , Trace Elements/metabolism
12.
Biochim Biophys Acta Proteins Proteom ; 1865(11 Pt A): 1358-1371, 2017 Nov.
Article in English | MEDLINE | ID: mdl-28866388

ABSTRACT

Fish otoliths are calcium carbonate biominerals that are involved in hearing and balance sensing. An organic matrix plays a crucial role in their formation. Otolith matrix macromolecule-64 (OMM-64) is a highly acidic, calcium-binding protein (CBP) found in rainbow trout otoliths. It is a component of high-molecular-weight aggregates, which influence the size, shape and polymorph of calcium carbonate in vitro. In this study, a protocol for the efficient expression and purification of OMM-64 was developed. For the first time, the complete structural characteristics of OMM-64 were described. Various biophysical methods were combined to show that OMM-64 occurs as an intrinsically disordered monomer. Under denaturing conditions (pH, temperature) OMM-64 exhibits folding propensity. It was determined that OMM-64 binds approximately 61 calcium ions with millimolar affinity. The folding-unfolding experiments showed that calcium ions induced the collapse of OMM-64. The effect of other counter ions present in trout endolymph on OMM-64 conformational changes was studied. The significance of disordered properties of OMM-64 and the possible function of this protein is discussed.


Subject(s)
Calcium-Binding Proteins/chemistry , Calcium/chemistry , Extracellular Matrix Proteins/chemistry , Fish Proteins/chemistry , Intrinsically Disordered Proteins/chemistry , Otolithic Membrane/chemistry , Animals , Binding Sites , Calcium/metabolism , Calcium-Binding Proteins/genetics , Calcium-Binding Proteins/metabolism , Cloning, Molecular , Escherichia coli/genetics , Escherichia coli/metabolism , Extracellular Matrix Proteins/genetics , Extracellular Matrix Proteins/metabolism , Fish Proteins/genetics , Fish Proteins/metabolism , Gene Expression , Hydrogen-Ion Concentration , Intrinsically Disordered Proteins/genetics , Intrinsically Disordered Proteins/metabolism , Oncorhynchus mykiss/physiology , Otolithic Membrane/metabolism , Protein Binding , Protein Folding , Protein Interaction Domains and Motifs , Protein Unfolding , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Temperature
13.
J Exp Biol ; 220(Pt 16): 2965-2969, 2017 08 15.
Article in English | MEDLINE | ID: mdl-28596212

ABSTRACT

Sagittal otoliths are essential components of the sensory organs that enable all teleost fish to hear and maintain balance, and are primarily composed of calcium carbonate. A deformity, where aragonite (the normal crystal form) is replaced with vaterite, was first noted over 50 years ago but its underlying cause is unresolved. We evaluated the prevalence of vateritic otoliths from two captive rearing studies which suggested that fast growth, due to environmental rather than genetic control, led to vaterite development. We then tested this by varying light and temperature to create phenotypes with different growth rates, which resulted in fast growers (5 times larger) having 3 times more vaterite than slow growers. A decrease in either the ratio of otolith matrix proteins (otolin-1/OMM-64) or [Ca2+]/[CO32-] may explain why fast growth causes vaterite deposition. As vaterite decreases hearing sensitivity, reducing growth rates in hatcheries may improve the welfare of farmed fish and increase the success of conservation efforts.


Subject(s)
Calcium Carbonate/metabolism , Diet/veterinary , Otolithic Membrane/metabolism , Photoperiod , Salmo salar/abnormalities , Salmo salar/growth & development , Temperature , Animals , Aquaculture , Otolithic Membrane/abnormalities , Salmo salar/genetics
14.
Genesis ; 54(12): 613-625, 2016 Dec.
Article in English | MEDLINE | ID: mdl-27792272

ABSTRACT

Otoconia are minute biocrystals composed of glycoproteins, proteoglycans, and CaCO3 , and are indispensable for sensory processing in the utricle and saccule. Otoconia abnormalities and degeneration can cause or facilitate crystal dislocation to the ampulla, leading to vertigo and imbalance in humans. In order to better understand the molecular mechanism controlling otoconia formation and maintenance, we have examined the spatial and temporal expression differences of otoconial genes in the mouse inner ear at developmental, mature and aging stages using whole transcriptome sequencing (RNA-Seq) and quantitative RT-PCR. We show that the expression levels of most otoconial genes are much higher in the utricle and saccule compared with other inner ear tissues before postnatal stages in C57Bl/6J mice, and the expression of a few of these genes is restricted to the embryonic utricle and saccule. After the early postnatal stages, expression of all otoconial genes in the utricle and saccule is drastically reduced, while a few genes gain expression dominance in the aging ampulla, indicating a potential for ectopic debris formation in the latter tissue at old ages. The data suggest that the expression of otoconial genes is tightly regulated spatially and temporally during developmental stages and can become unregulated at aging stages. Birth Defects Research (Part A) 106:613-625, 2016. © 2016 Wiley Periodicals, Inc.


Subject(s)
Aging/genetics , Otolithic Membrane/metabolism , Transcriptome/genetics , Vertigo/genetics , Animals , Calcium Carbonate/metabolism , Ear, Inner/metabolism , Ear, Inner/pathology , Gene Expression Regulation , Glycoproteins/biosynthesis , Glycoproteins/genetics , Humans , Mice , Organogenesis/genetics , Otolithic Membrane/pathology , Proteoglycans/biosynthesis , Proteoglycans/genetics , Saccule and Utricle/metabolism , Saccule and Utricle/pathology , Vertigo/pathology
15.
Article in English | MEDLINE | ID: mdl-27139083

ABSTRACT

Metabolic costs are central to individual energy budgets, making estimates of metabolic rate vital to understanding how an organism interacts with its environment as well as the role of species in their ecosystem. Despite the ecological and commercial importance of fishes, there are currently no widely adopted means of measuring field metabolic rate in fishes. The lack of recognized methods is in part due to the logistical difficulties of measuring metabolic rates in free swimming fishes. However, further development and refinement of techniques applicable for field-based studies on free swimming animals would greatly enhance the capacity to study fish under environmentally relevant conditions. In an effort to foster discussion in this area, from field ecologists to biochemists alike, we review aspects of energy metabolism and give details on approaches that have been used to estimate energetic parameters in fishes. In some cases, the techniques have been applied to field conditions; while in others, the methods have been primarily used on laboratory held fishes but should be applicable, with validation, to fishes in their natural environment. Limitations, experimental considerations and caveats of these measurements and the study of metabolism in wild fishes in general are also discussed. Potential novel approaches to FMR estimates are also presented for consideration. The innovation of methods for measuring field metabolic rate in free-ranging wild fish would revolutionize the study of physiological ecology.


Subject(s)
Fishes/metabolism , Animals , Carbon Disulfide/metabolism , Deuterium Oxide/metabolism , Ecosystem , Energy Metabolism , Fish Proteins/biosynthesis , Fishes/physiology , Heart Rate , Otolithic Membrane/metabolism , Oxygen Consumption , Oxygen Isotopes , Swimming/physiology , Telemetry/veterinary
16.
Article in English | MEDLINE | ID: mdl-27328377

ABSTRACT

Biomineral chemistry is frequently used to infer life history events and habitat use in fishes; however, significant gaps remain in our understanding of the underlying mechanisms. Here we have taken a multidisciplinary approach to review the current understanding of element incorporation into biomineralized structures in fishes. Biominerals are primarily composed of calcium-based derivatives such as calcium carbonate found in otoliths and calcium phosphates found in scales, fins and bones. By focusing on non-essential life elements (strontium and barium) and essential life elements (calcium, zinc and magnesium), we attempt to connect several fields of study to synergise how physiology may influence biomineralization and subsequent inference of life history. Data provided in this review indicate that the presence of non-essential elements in biominerals of fish is driven primarily by hypo- and hyper-calcemic environmental conditions. The uptake kinetics between environmental calcium and its competing mimics define what is ultimately incorporated in the biomineral structure. Conversely, circannual hormonally driven variations likely influence essential life elements like zinc that are known to associate with enzyme function. Environmental temperature and pH as well as uptake kinetics for strontium and barium isotopes demonstrate the role of mass fractionation in isotope selection for uptake into fish bony structures. In consideration of calcium mobilisation, the action of osteoclast-like cells on calcium phosphates of scales, fins and bones likely plays a role in fractionation along with transport kinetics. Additional investigations into calcium mobilisation are warranted to understand differing views of strontium, and barium isotope fractionation between calcium phosphates and calcium carbonate structures in fishes.


Subject(s)
Fishes/physiology , Animal Fins/metabolism , Animals , Calcification, Physiologic , Calcium/metabolism , Ecosystem , Minerals/metabolism , Otolithic Membrane/metabolism , Trace Elements/metabolism
17.
Biochemistry ; 54(42): 6525-34, 2015 Oct 27.
Article in English | MEDLINE | ID: mdl-26445027

ABSTRACT

Starmaker (Stm) is an intrinsically disordered protein (IDP) involved in otolith biomineralization in Danio rerio. Stm controls calcium carbonate crystal formation in vivo and in vitro. Phosphorylation of Stm affects its biomineralization properties. This study examined the effects of calcium ions and phosphorylation on the structure of Stm. We have shown that CK2 kinase phosphorylates 25 or 26 residues in Stm. Furthermore, we have demonstrated that Stm's affinity for calcium binding is dependent on its phosphorylation state. Phosphorylated Stm (StmP) has an estimated 30 ± 1 calcium binding sites per protein molecule with a dissociation constant (KD) of 61 ± 4 µM, while the unphosphorylated protein has 28 ± 3 sites and a KD of 210 ± 22 µM. Calcium ion binding induces a compaction of the Stm molecule, causing a significant decrease in its hydrodynamic radius and the formation of a secondary structure. The screening effect of Na(+) ions on calcium binding was also observed. Analysis of the hydrodynamic properties of Stm and StmP showed that Stm and StmP molecules adopt the structure of native coil-like proteins.


Subject(s)
Calcium/metabolism , Intrinsically Disordered Proteins/chemistry , Intrinsically Disordered Proteins/metabolism , Zebrafish Proteins/chemistry , Zebrafish Proteins/metabolism , Animals , Calcium Carbonate/metabolism , Calcium-Binding Proteins/chemistry , Calcium-Binding Proteins/metabolism , Casein Kinase II/metabolism , Hydrodynamics , Kinetics , Minerals/metabolism , Models, Molecular , Otolithic Membrane/metabolism , Phosphorylation , Protein Conformation , Protein Structure, Secondary , Zebrafish/metabolism
18.
Development ; 139(10): 1777-87, 2012 May.
Article in English | MEDLINE | ID: mdl-22461562

ABSTRACT

Otoliths are biomineralised structures required for the sensation of gravity, linear acceleration and sound in the zebrafish ear. Otolith precursor particles, initially distributed throughout the otic vesicle lumen, become tethered to the tips of hair cell kinocilia (tether cilia) at the otic vesicle poles, forming two otoliths. We have used high-speed video microscopy to investigate the role of cilia and ciliary motility in otolith formation. In wild-type ears, groups of motile cilia are present at the otic vesicle poles, surrounding the immotile tether cilia. A few motile cilia are also found on the medial wall, but most cilia (92-98%) in the otic vesicle are immotile. In mutants with defective cilia (iguana) or ciliary motility (lrrc50), otoliths are frequently ectopic, untethered or fused. Nevertheless, neither cilia nor ciliary motility are absolutely required for otolith tethering: a mutant that lacks cilia completely (MZovl) is still capable of tethering otoliths at the otic vesicle poles. In embryos with attenuated Notch signalling [mindbomb mutant or Su(H) morphant], supernumerary hair cells develop and otolith precursor particles bind to the tips of all kinocilia, or bind directly to the hair cells' apical surface if cilia are absent [MZovl injected with a Su(H)1+2 morpholino]. However, if the first hair cells are missing (atoh1b morphant), otolith formation is severely disrupted and delayed. Our data support a model in which hair cells produce an otolith precursor-binding factor, normally localised to tether cell kinocilia. We also show that embryonic movement plays a minor role in the formation of normal otoliths.


Subject(s)
Hair Cells, Auditory/metabolism , Otolithic Membrane/cytology , Otolithic Membrane/embryology , Animals , Cilia , Embryo, Nonmammalian/cytology , Embryo, Nonmammalian/metabolism , Hair Cells, Auditory/cytology , Immunohistochemistry , In Situ Hybridization , Microscopy, Video , Otolithic Membrane/metabolism , Zebrafish , Zebrafish Proteins/genetics , Zebrafish Proteins/metabolism
19.
Development ; 139(3): 514-24, 2012 Feb.
Article in English | MEDLINE | ID: mdl-22190638

ABSTRACT

Cilia are essential for normal development. The composition and assembly of cilia has been well characterized, but the signaling and transcriptional pathways that govern ciliogenesis remain poorly studied. Here, we report that Wnt/ß-catenin signaling directly regulates ciliogenic transcription factor foxj1a expression and ciliogenesis in zebrafish Kupffer's vesicle (KV). We show that Wnt signaling acts temporally and KV cell-autonomously to control left-right (LR) axis determination and ciliogenesis. Specifically, reduction of Wnt signaling leads to a disruption of LR patterning, shorter and fewer cilia, a loss of cilia motility and a downregulation of foxj1a expression. However, these phenotypes can be rescued by KV-targeted overexpression of foxj1a. In comparison to the FGF pathway that has been previously implicated in the control of ciliogenesis, our epistatic studies suggest a more downstream function of Wnt signaling in the regulation of foxj1a expression and ciliogenesis in KV. Importantly, enhancer analysis reveals that KV-specific expression of foxj1a requires the presence of putative Lef1/Tcf binding sites, indicating that Wnt signaling activates foxj1a transcription directly. We also find that impaired Wnt signaling leads to kidney cysts and otolith disorganization, which can be attributed to a loss of foxj1 expression and disrupted ciliogenesis in the developing pronephric ducts and otic vesicles. Together, our data reveal a novel role of Wnt/ß-catenin signaling upstream of ciliogenesis, which might be a general developmental mechanism beyond KV. Moreover, our results also prompt a hypothesis that certain developmental effects of the Wnt/ß-catenin pathway are due to the activation of Foxj1 and cilia formation.


Subject(s)
Cilia/metabolism , Cytoskeletal Proteins/metabolism , Forkhead Transcription Factors/biosynthesis , Kupffer Cells/metabolism , Wnt Proteins/metabolism , Wnt Signaling Pathway , Wnt3A Protein/metabolism , Zebrafish Proteins/metabolism , beta Catenin/metabolism , Animals , Body Patterning/genetics , Cell Movement , Cytoskeletal Proteins/genetics , Down-Regulation , Embryo, Nonmammalian/metabolism , Enhancer Elements, Genetic , Gene Expression Regulation, Developmental/genetics , Kidney Diseases, Cystic/genetics , Kidney Diseases, Cystic/metabolism , Otolithic Membrane/metabolism , T Cell Transcription Factor 1/genetics , T Cell Transcription Factor 1/metabolism , Transcription Factors/genetics , Transcription Factors/metabolism , Wnt Proteins/genetics , Wnt3A Protein/genetics , Zebrafish/metabolism , Zebrafish Proteins/genetics
20.
FASEB J ; 28(7): 3124-33, 2014 Jul.
Article in English | MEDLINE | ID: mdl-24744145

ABSTRACT

Bisphenol A (BPA) is an endocrine disruptor that displays estrogenic activity. Several reports suggest that BPA may have estrogen receptor-independent effects. In zebrafish, 50 µM BPA exposure induces otic vesicle abnormalities, including otolith aggregation. The purpose of this study was to test if BPA action was mediated in vivo during zebrafish development by the orphan nuclear estrogen related receptor (ERR) γ. Combining pharmacological and functional approaches, we demonstrate that the zebrafish ERRγ mediates BPA-induced malformations in otoliths. Using different bisphenol derivatives, we show that different compounds can induce a similar otolith phenotype than BPA and that the binding affinity of these derivatives to the zebrafish ERRγ correlates with their ability to induce otolith malformations. Morpholino knockdown of ERRγ function suppresses the BPA effect on otoliths whereas overexpression of ERRγ led to a BPA-like otolith phenotype. Moreover, a subphenotypical dose of BPA (1 µM) combined with ERRγ overexpression led to a full-dose (50 µM) BPA otolith phenotype. We therefore conclude that ERRγ mediates the otic vesicle phenotype generated by BPA. Our results suggest that the range of pathways perturbed by this compound and its potential harmful effect are larger than expected.-Tohmé, M., Prud'homme, S. M., Boulahtouf, A., Samarut, E., Brunet, F., Bernard, L., Bourguet, W., Gibert, Y., Balaguer, P., Laudet, V. Estrogen-related receptor γ is an in vivo receptor of bisphenol A.


Subject(s)
Benzhydryl Compounds/pharmacology , Phenols/pharmacology , Protein Binding/drug effects , Receptors, Estrogen/metabolism , Zebrafish/metabolism , Animals , Otolithic Membrane/drug effects , Otolithic Membrane/metabolism
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