Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 295
Filter
Add more filters

Publication year range
1.
Int J Mol Sci ; 22(16)2021 Aug 17.
Article in English | MEDLINE | ID: mdl-34445534

ABSTRACT

Enzymes activity in a cell is determined by many factors, among which viscosity of the microenvironment plays a significant role. Various cosolvents can imitate intracellular conditions in vitro, allowing to reduce a combination of different regulatory effects. The aim of the study was to analyze the media viscosity effects on the rate constants of the separate stages of the bacterial bioluminescent reaction. Non-steady-state reaction kinetics in glycerol and sucrose solutions was measured by stopped-flow technique and analyzed with a mathematical model developed in accordance with the sequence of reaction stages. Molecular dynamics methods were applied to reveal the effects of cosolvents on luciferase structure. We observed both in glycerol and in sucrose media that the stages of luciferase binding with flavin and aldehyde, in contrast to oxygen, are diffusion-limited. Moreover, unlike glycerol, sucrose solutions enhanced the rate of an electronically excited intermediate formation. The MD simulations showed that, in comparison with sucrose, glycerol molecules could penetrate the active-site gorge, but sucrose solutions caused a conformational change of functionally important αGlu175 of luciferase. Therefore, both cosolvents induce diffusion limitation of substrates binding. However, in sucrose media, increasing enzyme catalytic constant neutralizes viscosity effects. The activating effect of sucrose can be attributed to its exclusion from the catalytic gorge of luciferase and promotion of the formation of the active site structure favorable for the catalysis.


Subject(s)
Glycerol/metabolism , Luciferases/chemistry , Luciferases/metabolism , Models, Theoretical , Photobacterium/enzymology , Sucrose/metabolism , Catalysis , Catalytic Domain , Diffusion , Molecular Dynamics Simulation , Viscosity
2.
Angew Chem Int Ed Engl ; 60(49): 25922-25932, 2021 12 01.
Article in English | MEDLINE | ID: mdl-34523784

ABSTRACT

Recombinant human erythropoietin (EPO) is the main therapeutic glycoprotein for the treatment of anemia in cancer and kidney patients. The in-vivo activity of EPO is carbohydrate-dependent with the number of sialic acid residues regulating its circulatory half-life. EPO carries three N-glycans and thus obtaining pure glycoforms provides a major challenge. We have developed a robust and reproducible chemoenzymatic approach to glycoforms of EPO with and without sialic acids. EPO was assembled by sequential native chemical ligation of two peptide and three glycopeptide segments. The glycopeptides were obtained by pseudoproline-assisted Lansbury aspartylation. Enzymatic introduction of the sialic acids was readily accomplished at the level of the glycopeptide segments but even more efficiently on the refolded glycoprotein. Biological recognition of the synthetic EPOs was shown by formation of 1:1 complexes with recombinant EPO receptor.


Subject(s)
Erythropoietin/metabolism , N-Acetylneuraminic Acid/biosynthesis , N-Acetylneuraminic Acid/chemical synthesis , Sialyltransferases/metabolism , Erythropoietin/chemistry , Glycosylation , Humans , Molecular Structure , N-Acetylneuraminic Acid/chemistry , Photobacterium/enzymology , beta-D-Galactoside alpha 2-6-Sialyltransferase
3.
Biochemistry ; 59(34): 3123-3128, 2020 09 01.
Article in English | MEDLINE | ID: mdl-31580652

ABSTRACT

Sialic acids are sugars present in many animal glycoproteins and are of particular interest in biopharmaceuticals, where a lack of sialylation can reduce bioactivity. Here, we describe how α-2,6-sialyltransferase from Photobacterium damselae can be used to markedly increase the level of sialylation of CHO-produced α-1-antitrypsin. Detailed analysis of the sialylation products showed that in addition to the expected α-2,6-sialylation of galactose, a second disialyl galactose motif Neu5Ac-α2,3(Neu5Ac-α2,6)Gal was produced, which, to our knowledge, had never been detected on a mammalian glycoprotein. We exploited this disialyl galactose activity of the P. damselae in a multienzyme reaction to produce a highly sialylated α-1-antitrypsin. The influence of this unique disialylation on the in vitro activity of α-1-antitrypsin was studied, and a toolkit of mass spectrometry methods for identifying this new disialyl galactose motif in complex mixtures was developed.


Subject(s)
Galactose/metabolism , N-Acetylneuraminic Acid/metabolism , Photobacterium/enzymology , Recombinant Proteins/metabolism , Sialyltransferases/metabolism , alpha 1-Antitrypsin/metabolism
4.
Photochem Photobiol Sci ; 19(2): 274-280, 2020 Feb 19.
Article in English | MEDLINE | ID: mdl-32002529

ABSTRACT

In the present study, we aimed to purify and characterize LuxG obtained from Photobacterium leiognathi YL and examine its improvement for NADH detection. To this end, we cloned and expressed the putative luxG gene of P. leiognathi YL in the Escherichia coli BL21 strain. The product of luxG is a flavin reductase that consists of 206 amino acids, corresponding to a subunit molecular mass of ∼26 kDa. Phylogenetic analysis demonstrated that P. leiognathi YL LuxG has a rather distant evolutionary relationship with Frase I of Aliivibrio fischeri and Frp of Vibrio harveyi, but a close evolutionary relationship with Fre from Escherichia coli, which are all enzymes related to oxido-reductase. Further comparison shows that the changes in the functionally conserved sites may contribute to the functional divergence of LuxG and Fre. LuxG could supply reduced flavin mononucleotide (FMN) for bacterial luminescence by catalyzing the oxidation of nicotinamide adenine dinucleotide hydrogen (NADH). Based on this, a coupled pure enzyme bioluminescent system was established and used for NADH detection. The NADH samples with concentrations of 0.1-1 nM were used to validate the linear relationship, and it was found that the logarithmic deviations were less than 3%, which showed more sensitive and stable results than the NADH detection by recombinant E. coli including the exogenously expressed luciferase and intrinsic Fre. Investigation of P. leiognathi YL LuxG would provide a basic understanding of its evolution, and structural and functional properties, which might contribute to the development of a NADH detection kit in the future.


Subject(s)
Bacterial Proteins/metabolism , Luminescent Measurements , NAD/analysis , Oxidoreductases/metabolism , Photobacterium/enzymology , Amino Acid Sequence , Bacterial Proteins/classification , Bacterial Proteins/genetics , Cloning, Molecular , Escherichia coli/metabolism , Evolution, Molecular , Oxidoreductases/classification , Oxidoreductases/genetics , Phylogeny , Protein Structure, Secondary , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Sequence Alignment
5.
Org Biomol Chem ; 18(15): 2886-2892, 2020 04 15.
Article in English | MEDLINE | ID: mdl-32236230

ABSTRACT

Terminal α-2,6-sialylation of N-glycans is a humanized glycosylation that affects the properties and efficacy of therapeutic glycoproteins. Fc di-sialylation (a biantennary N-glycan with two α-2,6-linked sialic acids) of IgG antibodies imparts them with enhanced anti-inflammatory activity and other roles. However, the microheterogeneity of N-glycoforms presents a challenge for therapeutic development. Therefore, controlled sialylation has drawn considerable attention, but direct access to well-defined di-sialylated antibodies remains limited. Herein, a one-pot three-enzyme protocol was developed by engineering a bacterial sialyltransferase to facilitate the modification of therapeutic antibodies with N-acetylneuraminic acid or its derivatives towards optimized glycosylation. To overcome the low proficiency of bacterial sialyltransferase in antibody remodeling, the Photobacterium sp. JT-ISH-224 α-2,6-sialyltransferase (Psp2,6ST) was genetically engineered by terminal truncation and site-directed mutagenesis based on its protein crystal structure. With the optimized reaction conditions and using activity-based screening of various Psp2,6ST variants, a truncated mutant Psp2,6ST (111-511)-His6 A235M/A366G was shown to effectively improve the catalytic efficiency of antibody di-sialylation. Herceptin and the donor substrate promiscuity allow the introduction of bioorthogonal modifications of N-acetylneuraminic acid into antibodies for site-specific conjugation. 2-AB hydrophilic interaction chromatography analysis of the released N-glycans and intact mass characterization confirmed the high di-sialylation of Herceptin via the optimized one-pot three-enzyme reaction. This study established a versatile enzymatic approach for producing highly di-sialylated IgG antibodies. It provides new insights into engineering bacterial sialyltransferase for adaptation to the enzymatic glycoengineering of therapeutic antibodies and the glycosite-specific conjugation of antibodies.


Subject(s)
Antibodies/metabolism , Photobacterium/enzymology , Protein Engineering , Sialic Acids/metabolism , Sialyltransferases/metabolism , Antibodies/chemistry , Sialyltransferases/genetics , beta-D-Galactoside alpha 2-6-Sialyltransferase
6.
Dokl Biochem Biophys ; 492(1): 162-165, 2020 May.
Article in English | MEDLINE | ID: mdl-32632596

ABSTRACT

The effects of medium viscosity on the decay rate of the 4a-hydroperoxyflavin intermediate of the bioluminescent reaction was investigated. It was found that at low concentrations of glycerol or sucrose (viscosity 1.1-1.3 cP) the decay rate rises, whereas a further increase in viscosity to 6.2 cP leads to a decrease in the decay rate following a power function with an exponent of 0.82-0.84. Using molecular dynamics methods, it was shown that the presence of glycerol and sucrose molecules causes a change in the mobility of the amino acid residues in the active center of luciferase, particularly those responsible for binding of flavin. The results obtained are indicative of two opposite effects of viscous media with glycerol and sucrose: (1) destabilization of 4a-hydroperoxyflavin due to a change in the structural and dynamic properties of the protein and (2) stabilization of this intermediate by the decrease in the diffusion rate of its decay products.


Subject(s)
Culture Media/metabolism , Luciferases/chemistry , Luciferases/metabolism , Photobacterium/enzymology , Diffusion , Kinetics , Viscosity
7.
Glycobiology ; 29(10): 735-747, 2019 09 20.
Article in English | MEDLINE | ID: mdl-31281932

ABSTRACT

The development of therapeutic proteins for the treatment of numerous diseases is one of the fastest growing areas of biotechnology. Therapeutic efficacy and serum half-life are particularly important, and these properties rely heavily on the glycosylation state of the protein. Expression systems to produce authentically fully glycosylated therapeutic proteins with appropriate terminal sialic acids are not yet perfected. The in vitro modification of therapeutic proteins by recombinant sialyltransferases offers a promising and elegant strategy to overcome this problem. Thus, the detailed expression and characterization of sialyltransferases for completion of the glycan chains is of great interest to the community. We identified a novel α2,6-sialyltransferase from Helicobacter cetorum and compared it to the human ST6Gal1 and a Photobacterium sp. sialyltransferase using glycoprotein substrates in a 96-well microtiter-plate-based assay. We demonstrated that the recombinant α2,6-sialyltransferase from H. cetorum is an excellent catalyst for modification of N-linked glycans of different therapeutic proteins.


Subject(s)
Antigens, CD/genetics , Glycoproteins/genetics , Polysaccharides/genetics , Sialyltransferases/genetics , Antigens, CD/chemistry , Cloning, Molecular , Glycoproteins/chemistry , Glycosylation , Helicobacter/enzymology , Humans , Photobacterium/enzymology , Polysaccharides/chemistry , Protein Processing, Post-Translational/genetics , Sialic Acids/genetics , Sialyltransferases/chemistry , beta-D-Galactoside alpha 2-6-Sialyltransferase
8.
Anal Biochem ; 570: 13-20, 2019 04 01.
Article in English | MEDLINE | ID: mdl-30586560

ABSTRACT

l-Histidine analysis is essential in physiological research and clinical applications because l-histidine concentrations in biofluids are associated with various diseases. However, an enzymatic method for l-histidine quantitation has not yet been established. Here, we describe a novel l-histidine quantitation assay using a combination of histidine decarboxylase (HDC) and histamine dehydrogenase (HDH) enzymes. Wild-type HDC is unstable and completely lost its activity within 50 days of storage at 4 °C in solution. We rationally designed a HDC C57S mutant with markedly improved stability (storage at 4 °C for over 200 days) without altering the enzyme's substrate specificity. Together with HDH, the HDC C57S mutant was applied to quantify l-histidine concentrations in human plasma. The assay showed high precision (<2.0% inter-assay variation) and high accuracy (<5.8% deviation from the results of LC/MS).


Subject(s)
Histidine Decarboxylase/metabolism , Histidine/blood , Oxidoreductases Acting on CH-NH Group Donors/metabolism , Chromatography, High Pressure Liquid , Histidine/metabolism , Histidine Decarboxylase/genetics , Humans , Kinetics , Mass Spectrometry , Mutagenesis, Site-Directed , Photobacterium/enzymology , Protein Stability , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Substrate Specificity
9.
Luminescence ; 33(6): 1054-1061, 2018 Sep.
Article in English | MEDLINE | ID: mdl-29927531

ABSTRACT

In the present study, we demonstrate the use of a disposable luciferase-based microfluidic bioassay chip for environmental monitoring and methods for fabrication. The designed microfluidic system includes a chamber with immobilized enzymes of bioluminescent bacteria Photobacterium leiognathi and Vibrio fischeri and their substrates, which dissolve after the introduction of the water sample and thus activate bioluminescent reactions. Limits of detection for copper (II) sulfate, 1,3-dihydroxybenzene and 1,4-benzoquinone for the proposed microfluidic biosensor measured 3 µM, 15 mM, and 2 µM respectively, and these values are higher or close to the level of conventional environmental biosensors based on lyophilized bacteria. Approaches for entrapment of enzymes on poly(methyl methacrylate) (PMMA) plates using a gelatin scaffold and solvent bonding of PMMA chip plates under room temperature were suggested. The proposed microfluidic system may be used with some available luminometers and future portable luminescence readers.


Subject(s)
Biosensing Techniques , Luciferases/chemistry , Microfluidic Analytical Techniques , Water Pollution/analysis , Aliivibrio fischeri/enzymology , Benzene Derivatives/analysis , Benzoquinones/analysis , Biosensing Techniques/instrumentation , Copper Sulfate/analysis , Enzymes, Immobilized/chemistry , Enzymes, Immobilized/metabolism , Equipment Design , Luciferases/metabolism , Microfluidic Analytical Techniques/instrumentation , Molecular Structure , Photobacterium/enzymology
10.
Luminescence ; 33(6): 1010-1018, 2018 Sep.
Article in English | MEDLINE | ID: mdl-29920921

ABSTRACT

Cloning of genes encoding the luciferase from Photobacterium leiognathi YL in Escherichia coli Rosetta (DE3) was performed successfully and the expressed forms of lux AB were purified to homogeneity. Experimental measurements revealed that luciferase from Photobacterium leiognathi YL has good thermal stability and a high residual activity at extreme pH values, which are extremely important for its various ecological, industrial and medical applications. Furthermore, we made a first attempt for quantitative detection of NADH by recombinant E. coli Rosetta (DE3) coupled enzyme system. A good linear relationship between luminescence intensity and NADH with low (1-12 nmol/L) and high (10-500 nmol/L) concentration was observed, whose standard curve was y = 772.97× + 4041.1, R2  = 0.9884 and y = 1710× + 4.99 × 105 , R2  = 0.9727, respectively. Our results demonstrate a high sensitivity of recombinant E. coli coupled enzyme system to NADH on the basis of high soluble expression of recombinant luciferase and continuous and stable expression of some NAD(P)H-dependent flavin mononucleotide (FMN) reductases.


Subject(s)
Escherichia coli/genetics , Gene Expression Regulation, Enzymologic/genetics , Luciferases, Bacterial/genetics , NAD/analysis , Photobacterium/enzymology , Escherichia coli/metabolism , Luciferases, Bacterial/metabolism , NAD/metabolism
11.
Chembiochem ; 18(9): 858-863, 2017 05 04.
Article in English | MEDLINE | ID: mdl-28127867

ABSTRACT

DNA-encoded libraries are increasingly used for the discovery of bioactive lead compounds in high-throughput screening programs against specific biological targets. Although a number of libraries are now available, they cover limited chemical space due to bias in ease of synthesis and the lack of chemical reactions that are compatible with DNA tagging. For example, compound libraries rarely contain complex biomolecules such as carbohydrates with high levels of functionality, stereochemistry, and hydrophilicity. By using biocatalysis in combination with chemical methods, we aimed to significantly expand chemical space and generate generic libraries with potentially better biocompatibility. For DNA-encoded libraries, biocatalysis is particularly advantageous, as it is highly selective and can be performed in aqueous environments, which is an essential feature for this split-and-mix library technology. In this work, we demonstrated the application of biocatalysis for the on-DNA synthesis of carbohydrate-based libraries by using enzymatic oxidation and glycosylation in combination with traditional organic chemistry.


Subject(s)
Carbohydrates/chemistry , DNA/chemistry , Small Molecule Libraries/chemistry , Biocatalysis , DNA/metabolism , Glycoconjugates/chemistry , Glycoconjugates/metabolism , Glycosylation , Neuraminidase/metabolism , Oxidation-Reduction , Photobacterium/enzymology , Sialyltransferases/metabolism , Trypanosoma cruzi/enzymology
12.
Chembiochem ; 18(17): 1730-1734, 2017 09 05.
Article in English | MEDLINE | ID: mdl-28632300

ABSTRACT

A conjugatable form of the tumour-associated carbohydrate antigen sialyl-Tn (Neu5Ac-α-2,6-GalNAc) was efficiently produced in Escherichia coli. Metabolically engineered E. coli strains overexpressing the 6-sialyltransferase gene of Photobacterium sp. and CMP-Neu5Ac synthetase genes of Neisseria meningitidis were cultivated at high density in the presence of GalNAc-α-propargyl as the exogenous acceptor. The target disaccharides, which were produced on the scale of several hundreds of milligrams, were then conjugated by using copper(I)-catalysed azide-alkyne cycloaddition click chemistry to a fully synthetic and immunogenic scaffold with the aim to create a candidate anticancer vaccine. Four sialyl-Tn epitopes were introduced on the upper face of an azido-functionalised multivalent cyclopeptide scaffold, the lower face of which was previously modified by an immunogenic polypeptide, PADRE. The ability of the resulting glycoconjugate to interact with oncofoetal sialyl-Tn monoclonal antibodies was confirmed in ELISA assays.


Subject(s)
Antigens, Tumor-Associated, Carbohydrate/metabolism , Escherichia coli/metabolism , Vaccines, Synthetic/metabolism , Amino Acid Sequence , Antibodies, Monoclonal/immunology , Antigen-Antibody Reactions , Antigens, Tumor-Associated, Carbohydrate/chemistry , Antigens, Tumor-Associated, Carbohydrate/genetics , Antigens, Tumor-Associated, Carbohydrate/immunology , Cancer Vaccines/genetics , Cancer Vaccines/immunology , Cancer Vaccines/metabolism , Chromatography, Thin Layer , Click Chemistry , Enzyme-Linked Immunosorbent Assay , Epitopes/chemistry , Epitopes/genetics , Epitopes/immunology , Epitopes/metabolism , Metabolic Engineering , Neisseria/enzymology , Peptides, Cyclic/genetics , Peptides, Cyclic/immunology , Peptides, Cyclic/metabolism , Photobacterium/enzymology , Sialyltransferases/genetics , Sialyltransferases/metabolism , Vaccines, Synthetic/genetics , Vaccines, Synthetic/immunology
13.
Bioinformatics ; 32(20): 3053-3057, 2016 10 15.
Article in English | MEDLINE | ID: mdl-27354698

ABSTRACT

MOTIVATION: Bacterial luciferases are heterodimeric enzymes that catalyze a chemical reaction, so called bioluminescence, which causes light emission in bacteria. Bioluminescence is vastly used as a reporter system in research tools and commercial developments. However, the details of the mechanisms that stabilize and transform the reaction intermediates as well as differences in the enzymatic kinetics amongst different bacterial luciferases remain to be elucidated. RESULTS: Amino acid sequences alignments for 21 bacterial luciferases (both α- and ß-subunits) were analyzed. For α-subunit, containing the enzyme active center, 48 polymorphic amino acid positions were identified. According to them, the sequences fell into two distinct groups known as slow and fast based on the decay rate of the bioluminescence reaction. The differences in the enzyme active site induced by structural polymorphism are analyzed. AVAILABILITY AND IMPLEMENTATION: Three-dimensional models of Photobacterium leiognathi luciferase and Vibrio harveyi luciferase (with reconstructed mobile loop) are freely available at PMDB database: PM0080525 and PM0080526, respectively. CONTACT: adeeva@sfu-kras.ruSupplementary information: Supplementary data are available at Bioinformatics online.


Subject(s)
Luciferases, Bacterial , Models, Molecular , Phylogeny , Kinetics , Luciferases, Bacterial/chemistry , Photobacterium/enzymology , Vibrio/enzymology
14.
Appl Environ Microbiol ; 83(11)2017 06 01.
Article in English | MEDLINE | ID: mdl-28341681

ABSTRACT

Photobacterium damselae subsp. damselae is a pathogen of marine animals, including fish of importance in aquaculture. The virulence plasmid pPHDD1, characteristic of highly hemolytic isolates, encodes the hemolysins damselysin (Dly) and phobalysin (PhlyP). Strains lacking pPHDD1 constitute the vast majority of the isolates from fish outbreaks, but genetic studies to identify virulence factors in plasmidless strains are scarce. Here, we show that the chromosome I-encoded hemolysin PhlyC plays roles in virulence and cell toxicity in pPHDD1-negative isolates of this pathogen. By combining the analyses of whole genomes and of gene deletion mutants, we identified two hitherto uncharacterized chromosomal loci encoding a phospholipase (PlpV) and a collagenase (ColP). PlpV was ubiquitous in the subspecies and exerted hemolytic activity against fish erythrocytes, which was enhanced in the presence of lecithin. ColP was restricted to a fraction of the isolates and was responsible for the collagen-degrading activity in this subspecies. Consistent with the presence of signal peptides in PlpV and ColP sequences, mutants for the type II secretion system (T2SS) genes epsL and pilD exhibited impairments in phospholipase and collagenase activities. Sea bass virulence experiments and cell culture assays demonstrated major contributions of PhlyC and PlpV to virulence and toxicity.IMPORTANCE This study constitutes genetic and genomic analyses of plasmidless strains of an emerging pathogen in marine aquaculture, Photobacterium damselae subsp. damselae To date, studies on the genetic basis of virulence were restricted to the pPHDD1 plasmid-encoded toxins Dly and PhlyP. However, the vast majority of the recent isolates of this pathogen from fish farm outbreaks lack this plasmid. Here we demonstrate that the plasmidless strains produce two hitherto uncharacterized ubiquitous toxins encoded in chromosome I, namely, the hemolysin PhlyC and the phospholipase PlpV. We report the main roles of these two toxins in fish virulence and in cell toxicity. Our results constitute the basis for a better understanding of the virulence of a widespread marine pathogen.


Subject(s)
Chromosomes, Bacterial/genetics , Collagenases/metabolism , Fish Diseases/microbiology , Gram-Negative Bacterial Infections/veterinary , Phospholipases/metabolism , Photobacterium/enzymology , Photobacterium/pathogenicity , Animals , Bass/microbiology , Chromosomes, Bacterial/metabolism , Collagenases/genetics , Gram-Negative Bacterial Infections/microbiology , Hemolysin Proteins/genetics , Hemolysin Proteins/metabolism , Phospholipases/genetics , Photobacterium/genetics , Photobacterium/metabolism , Plasmids/genetics , Plasmids/metabolism , Virulence
15.
Bioorg Med Chem ; 25(4): 1487-1495, 2017 02 15.
Article in English | MEDLINE | ID: mdl-28126438

ABSTRACT

Bacterial luciferase catalyzes the monooxygenation of long-chain aldehydes such as tetradecanal to the corresponding acid accompanied by light emission with a maximum at 490nm. In this study even numbered aldehydes with eight, ten, twelve and fourteen carbon atoms were compared with analogs having a double bond at the α,ß-position. These α,ß-unsaturated aldehydes were synthesized in three steps and were examined as potential substrates in vitro. The luciferase of Photobacterium leiognathi was found to convert these analogs and showed a reduced but significant bioluminescence activity compared to tetradecanal. This study showed the trend that aldehydes, both saturated and unsaturated, with longer chain lengths had higher activity in terms of bioluminescence than shorter chain lengths. The maximal light intensity of (E)-tetradec-2-enal was approximately half with luciferase of P. leiognathi, compared to tetradecanal. Luciferases of Vibrio harveyi and Aliivibrio fisheri accepted these newly synthesized substrates but light emission dropped drastically compared to saturated aldehydes. The onset and the decay rate of bioluminescence were much slower, when using unsaturated substrates, indicating a kinetic effect. As a result the duration of the light emission is doubled. These results suggest that the substrate scope of bacterial luciferases is broader than previously reported.


Subject(s)
Aldehydes/pharmacology , Aliivibrio fischeri/enzymology , Luciferases, Bacterial/antagonists & inhibitors , Photobacterium/enzymology , Vibrio/enzymology , Aldehydes/chemical synthesis , Aldehydes/chemistry , Dose-Response Relationship, Drug , Luciferases, Bacterial/metabolism , Luminescence , Molecular Docking Simulation , Molecular Structure , Structure-Activity Relationship
16.
Biochim Biophys Acta ; 1854(10 Pt A): 1466-75, 2015 Oct.
Article in English | MEDLINE | ID: mdl-26209460

ABSTRACT

The lux-operon of bioluminescent bacteria contains the genes coding for the enzymes required for light emission. Some species of Photobacteria feature an additional gene, luxF, which shows similarity to luxA and luxB, the genes encoding the heterodimeric luciferase. Isolated dimeric LuxF binds four molecules of an unusually derivatized flavin, i.e., 6-(3'-(R)-myristyl)-FMN (myrFMN). In the present study we have heterologously expressed LuxF in Escherichia coli BL21 in order to advance our understanding of the protein's binding properties and its role in photobacterial bioluminescence. Structure determination by X-ray crystallography confirmed that apo-LuxF possesses four preorganized binding sites, which are further optimized by adjusting the orientation of amino acid side chains. To investigate the binding properties of recombinant LuxF we have isolated myrFMN from Photobacterium leiognathi S1. We found that LuxF binds myrFMN tightly with a dissociation constant of 80±20 nM demonstrating that the purified apo-form of LuxF is fully competent in myrFMN binding. In contrast to LuxF, binding of myrFMN to luciferase is much weaker (Kd=4.0±0.4 µM) enabling LuxF to prevent inhibition of the enzyme by scavenging myrFMN. Moreover, we have used apo-LuxF to demonstrate that myrFMN occurs in all Photobacteria tested, irrespective of the presence of luxF indicating that LuxF is not required for myrFMN biosynthesis.


Subject(s)
Apoproteins/chemistry , Bacterial Proteins/chemistry , Flavin Mononucleotide/chemistry , Luciferases/chemistry , Myristic Acid/chemistry , Photobacterium/chemistry , Amino Acid Sequence , Apoproteins/genetics , Apoproteins/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Crystallography, X-Ray , Escherichia coli/genetics , Escherichia coli/metabolism , Gene Expression , Luciferases/genetics , Luciferases/metabolism , Luminescence , Models, Molecular , Molecular Sequence Data , Photobacterium/enzymology , Protein Binding , Protein Conformation , Protein Multimerization , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Sequence Alignment , Sequence Homology, Amino Acid , Thermodynamics
17.
Appl Environ Microbiol ; 82(7): 2167-2176, 2016 Jan 29.
Article in English | MEDLINE | ID: mdl-26826233

ABSTRACT

Scombrotoxin fish poisoning (SFP) remains the main contributor of fish poisoning incidents in the United States, despite efforts to control its spread. Psychrotrophic histamine-producing bacteria (HPB) indigenous to scombrotoxin-forming fish may contribute to the incidence of SFP. We examined the gills, skin, and anal vents of yellowfin (n = 3), skipjack (n = 1), and albacore (n = 6) tuna for the presence of indigenous HPB. Thirteen HPB strains were isolated from the anal vent samples from albacore (n = 3) and yellowfin (n = 2) tuna. Four of these isolates were identified as Photobacterium kishitanii and nine isolates as Photobacterium angustum; these isolates produced 560 to 603 and 1,582 to 2,338 ppm histamine in marine broth containing 1% histidine (25°C for 48 h), respectively. The optimum growth temperatures and salt concentrations were 26 to 27°C and 1% salt for P. kishitanii and 30 to 32°C and 2% salt for P. angustum in Luria 70% seawater (LSW-70). The optimum activity of the HDC enzyme was at 15 to 30°C for both species. At 5°C, P. kishitanii and P. angustum had growth rates of 0.1 and 0.2 h(-1), respectively, and the activities of histidine decarboxylase (HDC) enzymes were 71% and 63%, respectively. These results show that indigenous HPB in tuna are capable of growing at elevated and refrigeration temperatures. These findings demonstrate the need to examine the relationships between the rate of histamine production at refrigeration temperatures, seafood shelf life, and regulatory limits.


Subject(s)
Histamine/biosynthesis , Photobacterium/metabolism , Seafood/microbiology , Tuna/microbiology , Animals , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Food Contamination , Foodborne Diseases/microbiology , Histamine/toxicity , Histidine Decarboxylase/genetics , Histidine Decarboxylase/metabolism , Marine Toxins/metabolism , Marine Toxins/toxicity , Photobacterium/classification , Photobacterium/enzymology , Photobacterium/genetics , Phylogeny
18.
Extremophiles ; 20(1): 44-55, 2016 Jan.
Article in English | MEDLINE | ID: mdl-26475626

ABSTRACT

The gene encoding for a novel cold-adapted enzyme from family II of bacterial classification (GDSL family) was cloned from the genomic DNA of Photobacterium sp. strain J15 in an Escherichia coli system, yielding a recombinant 36 kDa J15 GDSL esterase which was purified in two steps with a final yield and purification of 38.6 and 15.3 respectively. Characterization of the biochemical properties showed the J15 GDSL esterase had maximum activity at 20 °C and pH 8.0, was stable at 10 °C for 3 h and retained 50 % of its activity after a 6 h incubation at 10 °C. The enzyme was activated by Tween-20, -60 and Triton-X100 and inhibited by 1 mM Sodium dodecyl sulphate (SDS), while ß-mercaptoethanol and Dithiothreitol (DTT) enhanced activity by 4.3 and 5.4 fold respectively. These results showed the J15 GDSL esterase was a novel cold-adapted enzyme from family II of lipolytic enzymes. A structural model constructed using autotransporter EstA from Pseudomonas aeruginosa as a template revealed the presence of a typical catalytic triad consisting of a serine, aspartate, and histidine which was verified with site directed mutagenesis on active serine.


Subject(s)
Acclimatization , Bacterial Proteins/metabolism , Carboxylic Ester Hydrolases/metabolism , Cold Temperature , Photobacterium/enzymology , Amino Acid Sequence , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Carboxylic Ester Hydrolases/chemistry , Carboxylic Ester Hydrolases/genetics , Enzyme Stability , Molecular Sequence Data , Photobacterium/genetics , Phylogeny
19.
J Bacteriol ; 197(23): 3676-85, 2015 Dec.
Article in English | MEDLINE | ID: mdl-26350139

ABSTRACT

UNLABELLED: Bacterial bioluminescence is taxonomically restricted to certain proteobacteria, many of which belong to the Vibrionaceae. In the most well-studied cases, pheromone signaling plays a key role in regulation of light production. However, previous reports have indicated that certain Photobacterium strains do not use this regulatory method for controlling luminescence. In this study, we combined genome sequencing with genetic approaches to characterize the regulation of luminescence in Photobacterium leiognathi strain KNH6, an extremely bright isolate. Using transposon mutagenesis and screening for decreased luminescence, we identified insertions in genes encoding components necessary for the luciferase reaction (lux, lum, and rib operons) as well as in nine other loci. These additional loci encode gene products predicted to be involved in the tricarboxylic acid (TCA) cycle, DNA and RNA metabolism, transcriptional regulation, and the synthesis of cytochrome c, peptidoglycan, and fatty acids. The mutagenesis screen did not identify any mutants with disruptions of predicted pheromone-related loci. Using targeted gene insertional disruptions, we demonstrate that under the growth conditions tested, luminescence levels do not appear to be controlled through canonical pheromone signaling systems in this strain. IMPORTANCE: Despite the long-standing interest in luminous bacteria, outside a few model organisms, little is known about the regulation and function of luminescence. Light-producing marine bacteria are widely distributed and have diverse lifestyles, suggesting that the control and significance of luminescence may be similarly diverse. In this study, we apply genetic tools to the study of regulation of light production in the extremely bright isolate Photobacterium leiognathi KNH6. Our results suggest an unusual lack of canonical pheromone-mediated control of luminescence and contribute to a better understanding of alternative strategies for regulation of a key bacterial behavior. These experiments lay the groundwork for further study of the regulation and role of bioluminescence in P. leiognathi.


Subject(s)
Bacterial Proteins/genetics , Photobacterium/chemistry , Photobacterium/genetics , Bacterial Proteins/metabolism , Gene Expression Regulation, Bacterial , Luciferases/genetics , Luciferases/metabolism , Luminescence , Molecular Sequence Data , Mutagenesis, Insertional , Operon , Photobacterium/enzymology , Photobacterium/metabolism
20.
Glycobiology ; 25(7): 767-73, 2015 Jul.
Article in English | MEDLINE | ID: mdl-25840968

ABSTRACT

Legionaminic acids (Leg) are bacterial analogs of neuraminic acid, with the same stereochemistry but different substituents at C5, C7 and C9. Hence they may be incorporated into useful analogs of sialoglycoconjugates, and we previously reported two sialyltransferases that could utilize cytidine monophosphate (CMP)-Leg5Ac7Ac for preparation of Leg glycoconjugates, which were resistant to sialidases [Watson DC, Leclerc S, Wakarchuk WW, Young NM. 2011. Enzymatic synthesis and properties of glycoconjugates with legionaminic acid as a replacement for neuraminic acid. Glycobiology. 21:99-108.]. These were the porcine ST3Gal1 and Pasteurella multocida sialyltransferases. We now report two additional sialyltransferases with superior Leg-transferase properties to the previous two. These are (i) a truncated form of a Photobacterium α2,6-sialyltransferase with an Ala-Met mutation in its active site, and (ii) an α2,3-sialyltransferase from Neisseria meningitidis MC58 with a higher transferase activity than the P. multocida enzyme, with either CMP-Neu5Ac or CMP-Leg5Ac7Ac as the donor. These enzymes will enable the production of useful Leg5Ac7Ac glycoconjugate derivatives with either α2,6 or α2,3 linkages and unique biological properties.


Subject(s)
Glycoconjugates/metabolism , N-Acetylneuraminic Acid/metabolism , Sialic Acids/metabolism , Sialyltransferases/metabolism , Animals , Carbohydrate Conformation , Glycoconjugates/chemistry , Models, Molecular , Mutation , Pasteurella multocida/enzymology , Photobacterium/enzymology , Swine
SELECTION OF CITATIONS
SEARCH DETAIL