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1.
Tohoku J Exp Med ; 258(4): 287-301, 2022 Nov 12.
Artículo en Inglés | MEDLINE | ID: mdl-36261354

RESUMEN

We report three cases of Waterhouse-Friderichsen syndrome (WFS) that were confirmed during forensic autopsies. Case 1 involved a man in his 50s post-splenectomy. Bacteriological examination revealed Streptococcus pneumoniae (S. pneumonia). The patient was considered to have died of asphyxiation after aspirating vomit. Case 2 involved a man in his 40s. Bacteriological examination again revealed S. pneumoniae. Histopathological examination showed hypoplasia of the spleen. This patient was considered to have died of multiple-organ failure due to sepsis, disseminated intravascular coagulation, and WFS. Case 3 involved a post-splenectomy woman in her 60s with a history of systemic lupus erythematosus. Bacteriological examination revealed Streptococcus oralis. This patient was considered to have died of multiple-organ failure due to sepsis, disseminated intravascular coagulation, and WFS. These three cases were included among forensic autopsies conducted in the last 5 years. WFS has been considered a rare disease, but may be more frequent than previously assumed. If a mildly ill patient displays a sudden change in status and dies within a short period of time, we consider it necessary to perform not only bacteriological examinations, but also histopathological examination of the spleen during autopsy.


Asunto(s)
Coagulación Intravascular Diseminada , Sepsis , Síndrome de Waterhouse-Friderichsen , Humanos , Masculino , Femenino , Síndrome de Waterhouse-Friderichsen/diagnóstico , Síndrome de Waterhouse-Friderichsen/patología , Autopsia , Esplenectomía , Bazo/patología , Coagulación Intravascular Diseminada/etiología
2.
Am J Phys Anthropol ; 165(1): 139-148, 2018 01.
Artículo en Inglés | MEDLINE | ID: mdl-29023628

RESUMEN

OBJECTIVES: The Ainu, the indigenous people living on the northernmost island of Japan, Hokkaido, have long been a focus of anthropological interest because of their cultural, linguistic, and physical identity. A major problem with genetic studies on the Ainu is that the previously published data stemmed almost exclusively from only 51 modern-day individuals living in Biratori Town, central Hokkaido. To clarify the actual genetic characteristics of the Ainu, individuals who are less influenced by mainland Japanese, who started large-scale immigration into Hokkaido about 150 years ago, should be examined. Moreover, the samples should be collected from all over Hokkaido. MATERIALS AND METHODS: Mitochondrial DNA haplogroups of 94 Ainu individuals from the Edo era were successfully determined by analyzing haplogroup-defining polymorphisms in the hypervariable and coding regions. Thereafter, their frequencies were compared to those of other populations. RESULTS: Our findings indicate that the Ainu still retain the matrilineage of the Hokkaido Jomon people. However, the Siberian influence on this population is far greater than previously recognized. Moreover, the influence of mainland Japanese is evident, especially in the southwestern part of Hokkaido that is adjacent to Honshu, the main island of Japan. DISCUSSION: Our results suggest that the Ainu were formed from the Hokkaido Jomon people, but subsequently underwent considerable admixture with adjacent populations. The present study strongly recommends revision of the widely accepted dual-structure model for the population history of the Japanese, in which the Ainu are assumed to be the direct descendants of the Jomon people.


Asunto(s)
Pueblo Asiatico/genética , ADN Antiguo/análisis , ADN Mitocondrial/genética , Etnicidad/genética , ADN Mitocondrial/clasificación , Genética de Población , Haplotipos/genética , Humanos , Japón , Polimorfismo de Nucleótido Simple/genética , Análisis de Secuencia de ADN , Siberia
3.
Int J Legal Med ; 129(1): 23-9, 2015 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-25160992

RESUMEN

A novel method for sex determination, based on the detection of the number of X chromosomes, was established. Current methods, based on the detection of the Y chromosome, can directly identify an unknown sample as male, but female gender is determined indirectly, by not detecting the Y chromosome. Thus, a direct determination of female gender is important because the quality (e.g., fragmentation and amelogenin-Y null allele) of the Y chromosome DNA may lead to a false result. Thus, we developed a novel sex determination method by analyzing the number of X chromosomes using a copy number variation (CNV) detection technique (the comparative Ct method). In this study, we designed a primer set using the amelogenin-X gene without the CNV region as the target to determine the X chromosome copy number, to exclude the influence of the CNV region from the comparative Ct value. The number of X chromosomes was determined statistically using the CopyCaller software with real-time PCR. All DNA samples from participants (20 males, 20 females) were evaluated correctly using this method with 1-ng template DNA. A minimum of 0.2-ng template DNA was found to be necessary for accurate sex determination with this method. When using ultraviolet-irradiated template DNA, as mock forensic samples, the sex of the samples could not be determined by short tandem repeat (STR) analysis but was correctly determined using our method. Thus, we successfully developed a method of sex determination based on the number of X chromosomes. Our novel method will be useful in forensic practice for sex determination.


Asunto(s)
Cromosomas Humanos X/genética , Variaciones en el Número de Copia de ADN , Análisis para Determinación del Sexo/métodos , Femenino , Genética Forense/métodos , Humanos , Masculino , Reacción en Cadena en Tiempo Real de la Polimerasa
4.
Sci Rep ; 13(1): 13913, 2023 08 25.
Artículo en Inglés | MEDLINE | ID: mdl-37626096

RESUMEN

Although methods for sequencing library preparation from double-stranded DNA are well established, those from single-stranded DNA (ssDNA) have not been well studied. Further, the existing methods have limitations in efficiency and yield. Therefore, we developed a highly efficient procedure for sequencing library preparation from ssDNA. In this method, the first adaptor tagging of ssDNA is performed using terminal deoxyribonucleotidyl transferase (TdT)-assisted adenylate connector-mediated ssDNA (TACS) ligation, which we reported recently. After complementary strand synthesis using the adaptor-tagged ssDNA, second adaptor tagging via Vaccinia virus topoisomerase I (VTopoI or TOPO)-based adaptor ligation is performed. With additional steps for degradation, repression, and removal of the adaptor dimer, the proposed TACS-TOPO scheme realizes adaptor dimer-free sequencing library preparation from ssDNA samples of 24 pg. The TACS-TOPO scheme was successfully applied to cell-free DNA analysis with amplification-free library preparation from 50 µL of human serum. A modified TACS-TOPO scheme was also applied to DNA extracted from ancient human bones, bringing two to eight times more library yields than those using a conventional library preparation protocol. The procedures for preparing VTopoI and its complex with a double-stranded oligonucleotide adaptor are also described. Overall, the proposed TACS-TOPO scheme can facilitate practical and sensitive sequencing analysis of ssDNA.


Asunto(s)
Ácidos Nucleicos Libres de Células , Neoplasias de Células Escamosas , Humanos , ADN de Cadena Simple , Biblioteca de Genes , Oligonucleótidos , ADN Nucleotidilexotransferasa
5.
Leg Med (Tokyo) ; 59: 102151, 2022 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-36191412

RESUMEN

In human identification methods that target short tandem repeats (STRs), massively parallel sequencing (MPS) technology has made it possible to genotype at the level of the specific sequence itself. This allows for the detection of repeat unit variants and single nucleotide polymorphisms (SNPs) adjacent to the STRs. Using the GlobalFiler™ NGS STR Panel v2, Ion S5, and Converge software, this study constructed a Japanese database of 31 autosomal STRs (auSTRs) and two sex markers from 322 individuals. After excluding some sequence errors and stutters, a total of 31 novel alleles were identified. Additionally, using the allele frequencies of 31 auSTR loci, the match probabilities for the length-based and sequence-based data were calculated to be 1.433 × 10-34 and 9.163 × 10-38, respectively. These values are at least nine orders of magnitude higher than that obtained from 21 auSTR loci in the Japanese population using the conventional capillary electrophoresis method. The database generated in this study is expected to be implemented in forensic practice and used to solve difficult casework.


Asunto(s)
Dermatoglifia del ADN , Repeticiones de Microsatélite , Humanos , Dermatoglifia del ADN/métodos , Japón , Análisis de Secuencia de ADN , Repeticiones de Microsatélite/genética , Frecuencia de los Genes/genética
6.
Leg Med (Tokyo) ; 59: 102136, 2022 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-36049424

RESUMEN

Sex determination is a crucial factor in the identification of unidentified human remains. Sex determination by DNA analysis is particularly useful because it can be applied to samples for which morphological characteristics are unavailable. Because samples handled in forensic DNA typing are easily degraded by environmental factors and microorganisms, there is a need for a method that can accurately determine sex even in highly decayed samples. Previous studies mainly used sex differences in an intron of the amelogenin gene. However, this region is highly polymorphic, and there are cases where accurate sexing cannot be performed because of genetic mutations in the target region. Thus, for reliable sex determination, it is desirable to select loci with as few non-sexual polymorphisms as possible. In this study, we focused on the exon 1 region of the amelogenin gene, which has very little polymorphism other than sex differences. We developed a primer set for sex determination and compared it with the GlobalFiler™ PCR Amplification Kit (GF), which is widely used for forensic DNA typing. The results showed that the amount of DNA required for accurate sex determination was 25 pg for both methods, achieving equivalent sensitivity. Next, we compared the two methods using ancient human skeletons and found that the present method with its shorter amplicon was considerably superior to GF. The present method is simple, rapid, inexpensive, and suitable for analyzing highly degraded samples. Therefore, this method is expected to contribute to forensic sciences and physical anthropology.


Asunto(s)
Dermatoglifia del ADN , Análisis para Determinación del Sexo , Femenino , Humanos , Masculino , Amelogenina/genética , Análisis para Determinación del Sexo/métodos , ADN/genética , Exones/genética
7.
Am J Phys Anthropol ; 146(3): 346-60, 2011 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-21953438

RESUMEN

To clarify the colonizing process of East/Northeast Asia as well as the peopling of the Americas, identifying the genetic characteristics of Paleolithic Siberians is indispensable. However, no genetic information on the Paleolithic Siberians has hitherto been reported. In the present study, we analyzed ancient DNA recovered from Jomon skeletons excavated from the northernmost island of Japan, Hokkaido, which was connected with southern Siberia in the Paleolithic period. Both the control and coding regions of their mitochondrial DNA (mtDNA) were analyzed in detail, and we confidently assigned 54 mtDNAs to relevant haplogroups. Haplogroups N9b, D4h2, G1b, and M7a were observed in these individuals, with N9b being the predominant one. The fact that all these haplogroups, except M7a, were observed with relatively high frequencies in the southeastern Siberians, but were absent in southeastern Asian populations, implies that most of the Hokkaido Jomon people were direct descendants of Paleolithic Siberians. The coalescence time of N9b (ca. 22,000 years) was before or during the last glacial maximum, implying that the initial trigger for the Jomon migration in Hokkaido was increased glaciations during this period. Interestingly, Hokkaido Jomons lack specific haplogroups that are prevailing in present-day native Siberians, implying that diffusion of these haplogroups in Siberia might have been after the beginning of the Jomon era, about 15,000 years before present.


Asunto(s)
Pueblo Asiatico , ADN Mitocondrial/análisis , Esqueleto , Antropología Física , Huesos/química , Genética de Población , Haplotipos , Humanos , Filogenia , Polimorfismo de Nucleótido Simple , Reproducibilidad de los Resultados , Siberia , Diente/química
8.
Forensic Sci Int ; 325: 110888, 2021 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-34186472

RESUMEN

We present a case of fatal poisoning by 4-F-methcathinone (4-FMC; also called flephedrone), 4-methoxy-α-pyrrolidinopentiophenone (4-MeO-α-PVP), 4-fluoro-α-pyrrolidinopentiophenone (4-F-α-PVP), and α-pyrrolidinohepatanophenone (PV8). In this study, we compared the mass spectra of 4-FMC, 4-MeO-α-PVP, 4-F-α-PVP, PV8, and α-pyrrolidinohexanophenone between LC-ESI-LIT-MS and GC-EI-MS analyses. Subsequently, we applied LC-ESI-LIT-MS for detection and quantification analyses of 4-FMC, 4-MeO-α-PVP, 4-F-α-PVP, and PV8 in human authentic whole blood samples. More specific mass spectra for the target compounds were obtained with the LC-ESI-LIT-MS qualitative analyses than with the GC-EI-MS analyses, indicating that LC-ESI-LIT-MS was more suitable for the qualitative analysis of cathinones. The LC-ESI-LIT-MS validation data showed moderately good linearity and reproducibility for the compounds in the quantitative analyses at the range of 1-500 ng/mL. The detection limits of four cathinones ranged from 0.1 to 1 ng/mL. The concentrations of 4-FMC, 4-MeO-α-PVP, 4-F-α-PVP, and PV8 in heart whole blood samples were 365, 449, 145, and 218 ng/mL, respectively. Those of the 4 cathinones in femoral vein whole blood samples were 397, 383, 127, and 167 ng/mL, respectively. We can then assume that the cause of death was acute poisoning by a combination of 4-FMC, 4-MeO-α-PVP, 4-F-α-PVP, and PV8. In this article, we present a detailed LC-ESI-LIT-MS procedure for detection and quantification analyses of 4-FMC, 4-MeO-α-PVP, 4-F-α-PVP, and PV8 in authentic human whole blood samples.


Asunto(s)
Alcaloides/sangre , Butirofenonas/sangre , Pentanonas/sangre , Propiofenonas/sangre , Psicotrópicos/sangre , Pirrolidinas/sangre , Adulto , Cromatografía Liquida , Toxicología Forense , Cromatografía de Gases y Espectrometría de Masas , Humanos , Masculino , Espectrometría de Masa por Ionización de Electrospray
9.
Genome Biol Evol ; 13(9)2021 09 01.
Artículo en Inglés | MEDLINE | ID: mdl-34410389

RESUMEN

Recent studies on paleogenomics have reported some Paleolithic and Neolithic genomes that have provided new insights into the human population history in East and Northeast Asia. However, there remain some cases where more recent migration events need to be examined to elucidate the detailed formation process of local populations. Although the area around northern Japan is one of the regions archaeologically suggested to have been affected by migration waves after the Neolithic period, the genetic source of these migrations are still unclear. Thus, genomic data from such past migrant populations would be highly informative to clarify the detailed formation process of local populations in this region. Here, we report the genome sequence of a 900-year-old adult female (NAT002) belonging to the prehistoric Okhotsk people, who have been considered to be the past migrants to northern Japan after the Neolithic period. We found a close relationship between NAT002 and modern Lower Amur populations and past admixture events between the Amur, Jomon, and Kamchatka ancestries. The admixture dating suggested migration of Amur-related ancestry at approximately 1,600 BP, which is compatible with the archaeological evidence regarding the settlement of the Okhotsk people. Our results also imply migration of Kamchatka-related ancestry at approximately 2,000 BP. In addition, human leukocyte antigen (HLA) typing detected the HLA-B*40 allele, which is reported to increase the risk of arthritis, suggesting the genetic vulnerability of NAT002 to hyperostosis, which was observed around her chest clavicle.


Asunto(s)
Genoma Humano , Genómica , Asia Oriental , Femenino , Migración Humana , Humanos , Japón , Paleontología , Esqueleto
10.
Intern Med ; 59(18): 2311-2315, 2020 Sep 15.
Artículo en Inglés | MEDLINE | ID: mdl-32522921

RESUMEN

Spastic paraplegia type 4 (SPG4) is caused by mutations of the SPAST gene and is the most common form of autosomal-dominantly inherited pure hereditary spastic paraplegia (HSP). We herein report a Japanese patient with SPG4 with a confirmed de novo mutation of SPAST. On exome sequencing and Sanger sequencing, we identified the heterozygous missense mutation p.R460L in the SPAST gene. This mutation was absent in the parents, and the paternity and maternity of the parents were both confirmed. The patient showed a pure SPG4 phenotype with an infantile onset. This study may expand the clinical and genetic findings for SPG4.


Asunto(s)
Paraplejía/diagnóstico , Paraplejía Espástica Hereditaria/diagnóstico , Espastina/genética , Femenino , Heterocigoto , Humanos , Japón , Mutación , Fenotipo , Adulto Joven
11.
Am J Phys Anthropol ; 138(3): 255-65, 2009 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-18951391

RESUMEN

Ancient DNA recovered from 16 Jomon skeletons excavated from Funadomari site, Hokkaido, Japan was analyzed to elucidate the genealogy of the early settlers of the Japanese archipelago. Both the control and coding regions of their mitochondrial DNA were analyzed in detail, and we could securely assign 14 mtDNAs to relevant haplogroups. Haplogroups D1a, M7a, and N9b were observed in these individuals, and N9b was by far the most predominant. The fact that haplogroups N9b and M7a were observed in Hokkaido Jomons bore out the hypothesis that these haplogroups are the (pre-) Jomon contribution to the modern Japanese mtDNA pool. Moreover, the fact that Hokkaido Jomons shared haplogroup D1 with Native Americans validates the hypothesized genetic affinity of the Jomon people to Native Americans, providing direct evidence for the genetic relationships between these populations. However, probably due to the small sample size or close consanguinity among the members of the site, the frequencies of the haplogroups in Funadomari skeletons were quite different from any modern populations, including Hokkaido Ainu, who have been regarded as the direct descendant of the Hokkaido Jomon people. It appears that the genetic study of ancient populations in northern part of Japan brings important information to the understanding of human migration in northeast Asia and America.


Asunto(s)
Huesos/anatomía & histología , ADN Mitocondrial/genética , Indígenas Norteamericanos/genética , Asia , Cartilla de ADN , Humanos , Japón , NADH Deshidrogenasa/genética , Filogenia , ARN de Transferencia de Arginina/genética , Siberia , Esqueleto
12.
Nihon Hoigaku Zasshi ; 63(2): 125-40, 2009 Nov.
Artículo en Japonés | MEDLINE | ID: mdl-20055190

RESUMEN

Nowadays, various morphological traits are routinely used for sexing the human skulls. The efficacy and reliability of sexing methods based on these traits in the Japanese population have not been systematically investigated. For sexing the skull, the authors established the well-defined criteria for sexing skulls by using the following five morphological traits; (1) the prominence and texture of the supraorbital arc; (2) the sharpness of the supraorbital margin; (3) the relative size of the zygomatic arc and the existence of a depression on it; (4) the size of the mastoid process and the existence of the supramastoid crest; (5) the prominence of the external occipital crest and the external occipital protuberance, and then evaluated their availability by using 313 recent Japanese skulls (205 males and 108 females) with known sex and age-at-death. We found that the supraorbital arc had the best accuracy rate (80.5%) followed by the mastoid process (78.6%). In cases wherein these two morphological traits indicated the same sex, the accuracy rate increased to 96.3%, suggesting that these traits are particularly useful for sexing the skulls of Japanese individuals. In addition, the accuracy rate of most traits for sexing skulls significantly differed between individuals who were aged < 30 years at death and those who were in their 30s at death. Thus, the influence of aging on the morphological traits of the skulls should not be disregarded in Japanese population. Moreover, similar results were obtained when 120 Edo period Japanese skulls (74 males and 46 females) were studied. This indicates that our method is applicable not only to recent samples but also to the archaeological ones.


Asunto(s)
Pueblo Asiatico , Determinación del Sexo por el Esqueleto/métodos , Cráneo/anatomía & histología , Adulto , Femenino , Humanos , Masculino
13.
Forensic Toxicol ; 37(1): 27-33, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-30636981

RESUMEN

PURPOSE: Mepirapim is a new synthetic cannabinoid. We previously reported that the concentrations of unchanged mepirapim in whole blood and urine were much higher than those of other synthetic cannabinoids. To determine the postmortem distribution of mepirapim and acetyl fentanyl in the deceased individual, we established a standard addition method for detailed analysis by liquid chromatography-mass spectrometry (LC-MS) for quantification of these drugs. METHODS: The LC-MS method was fully validated for linearity, extraction recovery, matrix effect and repeatability. RESULTS: Good linearities, extraction recoveries, matrix effects and repeatabilities were shown for both target compounds in all specimens. The concentrations of mepirapim and acetyl fentanyl in three body fluid specimens and 12 solid tissue specimens were measured. For mepirapim, the highest concentrations were found in the liver and kidney, and the concentrations in the blood and urine specimens were one order of magnitude lower than the high concentrations in the solid tissues except the psoas major muscle. For acetyl fentanyl, the highest concentrations were found in the myocardium, spleen and kidney, and the concentrations in the body fluid specimens were also one order of magnitude lower than the highest concentrations in the solid tissues. There were concentration differences of mepirapim and acetyl fentanyl among the regions of the brain. CONCLUSIONS: The concentration of unchanged mepirapim in urine was much higher than those of other synthetic cannabinoids; the higher dosage, urinary excretion, metabolisms and/or pharmacokinetics of mepirapim may be quite different from those of other synthetic cannabinoids.

14.
Forensic Toxicol ; 36(1): 81-87, 2018.
Artículo en Inglés | MEDLINE | ID: mdl-29367864

RESUMEN

PURPOSE: We encountered a curious case in which two male subjects self-administered mepirapim plus acetyl fentanyl by different routes, i.e., intravenously and by inhalation. We have thus established a detailed procedure for quantification of mepirapim and acetyl fentanyl in whole blood and urine specimens using gas chromatography (GC)-tandem mass spectrometry (MS/MS). METHODS: The GC-MS/MS method was validated for linearity, extraction recovery, accuracy, and precision. Liquid chromatography-MS/MS was also used for identification of the target compounds. RESULTS: Good linearity and reproducibility were achieved in the range of 20-1000 ng/g for both target compounds in both matrices. The concentrations of mepirapim in heart whole blood, femoral vein whole blood, and urine of the deceased individual with administration by intravenous injection were 593, 567, and 527 ng/g, respectively; those of acetyl fentanyl were 155, 125, and 126 ng/g, respectively. The mepirapim and acetyl fentanyl concentrations in the urine specimen of the surviving individual who had administered them by inhalation were 4900 and 570 ng/g, respectively. CONCLUSIONS: To our knowledge, with the exception of a brief mention of a mepirapim concentration in a serum sample in emergency medicine, there are no reported data on the identification and quantification of mepirapim in biological samples. Mepirapim is a new synthetic cannabinoid. The concentration profiles of unchanged mepirapim in whole blood and urine were quite different and unique. A detailed clarification of such uniqueness is under way in our laboratory.

15.
PLoS One ; 13(6): e0198689, 2018.
Artículo en Inglés | MEDLINE | ID: mdl-29933384

RESUMEN

The Austronesian language is spread from Madagascar in the west, Island Southeast Asia (ISEA) in the east (e.g. the Philippines and Indonesian archipelagoes) and throughout the Pacific, as far east as Easter Island. While it seems clear that the remote ancestors of Austronesian speakers originated in Southern China, and migrated to Taiwan with the development of rice farming by c. 5500 BP and onto the northern Philippines by c. 4000 BP (the Austronesian Dispersal Hypothesis or ADH), we know very little about the origins and emergence of Austronesian speakers in the Indonesian Archipelago. Using a combination of cranial morphometric and ancient mtDNA analyses on a new dataset from Gua Hairmau, that spans the pre-Neolithic through to Metal Period (5712-5591cal BP to 1864-1719 cal BP), we rigorously test the validity of the ADH in ISEA. A morphometric analysis of 23 adult male crania, using 16 of Martin's standard measurements, was carried out with results compared to an East and Southeast Asian dataset of 30 sample populations spanning the Late Pleistocene through to Metal Period, in addition to 39 modern samples from East and Southeast Asia, near Oceania and Australia. Further, 20 samples were analyzed for ancient mtDNA and assigned to identified haplogroups. We demonstrate that the archaeological human remains from Gua Harimau cave, Sumatra, Indonesia provide clear evidence for at least two (cranio-morphometrically defined) and perhaps even three (in the context of the ancient mtDNA results) distinct populations from two separate time periods. The results of these analyses provide substantive support for the ADH model in explaining the origins and population history of ISEA peoples.


Asunto(s)
ADN Antiguo/análisis , ADN Mitocondrial/análisis , Migración Humana , Cráneo/anatomía & histología , Antropometría , Asia Sudoriental , Conjuntos de Datos como Asunto , Humanos
16.
Leg Med (Tokyo) ; 9(3): 161-70, 2007 May.
Artículo en Inglés | MEDLINE | ID: mdl-17197226

RESUMEN

Allele frequencies and haplotypes for 16 Y-chromosome STR loci, DYS19, DYS389I, DYS389II, DYS390, DYS391, DYS392, DYS393, DYS437, DYS438, DYS439, DYS448, DYS456, DYS458, DYS635, Y GATA H4, and DYS385a/b, were determined in 161 unrelated Japanese males using AmpFlSTR Yfiler PCR Amplification Kit. This population was demonstrated 153 haploytpes, of which 146 were unique, six were found in two individuals, and one was found in three individuals. The haplotypes diversity calculated from the 16 Y-STR loci was 0.9994 and the discrimination capacity was 0.9503.


Asunto(s)
Cromosomas Humanos Y , Frecuencia de los Genes , Genética de Población , Haplotipos , Secuencias Repetidas en Tándem , Pueblo Asiatico/genética , Dermatoglifia del ADN , Humanos , Japón , Masculino , Reacción en Cadena de la Polimerasa
17.
Leg Med (Tokyo) ; 9(5): 237-40, 2007 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-17467322

RESUMEN

Sequence analysis of the hypervariable regions (HVRs) of mitochondrial DNA (mtDNA) are routinely performed in forensic casework, however, there are still issues to be resolved, such as the existence of multiple errors in published databases or the limitations of individual discrimination in certain populations. Here, we analyzed the coding region of mtDNA in detail by examining 36 haplogroup (HG)-defining single nucleotide polymorphisms (SNPs) using amplified product-length polymorphisms (APLP) method in conjunction with sequence analysis of HVR1 and HVR2 to establish a methodology for forensically reliable and practical mtDNA testing. The mtDNAs from 217 unrelated Japanese were examined and could be classified into 27 haplogroups. By combining the data of the coding region with those of HVRs, genetic diversity was slightly increased from 0.9817 to 0.9888 for HVR1/HG and from 0.9967 to 0.9970 for HVR1/HVR2/HG, as compared to the results of HVRs only. Moreover, in most cases, reliability of the HVR data could be confirmed by haplogroup motif analysis. Our mtDNA profiling method can provide reliable data in a time and cost-saving way due to the rapid and economical nature of APLP analysis.


Asunto(s)
Pueblo Asiatico/genética , Regiones Determinantes de Complementariedad/genética , ADN Mitocondrial/análisis , Haplotipos , Análisis de Secuencia de Proteína , Dermatoglifia del ADN , Genética de Población , Humanos , Japón , Reacción en Cadena de la Polimerasa , Polimorfismo de Nucleótido Simple
18.
Nihon Hoigaku Zasshi ; 61(2): 121-8, 2007 Nov.
Artículo en Japonés | MEDLINE | ID: mdl-18064878

RESUMEN

The method for estimating age-at-death of human skeletal remains based on the morphological changes of maxillary sutures is widely accepted in Japan. This method is based on the work of Kamijo (1949), which describes the age-related alternations in the morphology of maxillary sutures in Japanese population. However, from the modern anthropological viewpoint, Kamijo's report has some serious flaws in the definition of the morphology of the sutures as well as in the quality and quantity of the samples. Despite these problems, no verification has been conducted for the validity of estimating age-at-death based on his data. Recently, Mann et al. (1991) published a new method for estimating skeletal age based on the progressive obliteration of maxillary sutures. However, there has been no report that verified the effectiveness of their method in Japanese. In the present study, we re-examined the age-related alternations in the morphologies of maxillary sutures in Japanese and assessed the effectiveness of the method of Mann et al. (1991) by using 375 (274 males and 101 females) Japanese skeletons of known sex and age. In all maxillary sutures, the morphological transitions from "no obliteration" to "partial obliteration" with age could be confirmed. However the transition from "partial obliteration" to "complete obliteration" with age could be seen only in the incisive suture and the posterior median palatine suture. Moreover the percentage of each morphology of suture to a total within each decade shows almost no change over fifth decade. By using the method of Mann et al., we could correctly estimate the age-at-death of only 36.9% for males and 25.7% for females of the Japanese samples, however, we seldom overestimated the age-at-death of these samples compared with their actual age. This finding suggests that this method is applicable to estimate the minimum age-at-death in Japanese population.


Asunto(s)
Determinación de la Edad por el Esqueleto/métodos , Suturas Craneales/anatomía & histología , Antropología Forense/métodos , Maxilar/anatomía & histología , Adolescente , Adulto , Anciano , Pueblo Asiatico , Femenino , Humanos , Masculino , Persona de Mediana Edad
19.
PLoS One ; 12(1): e0169348, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-28052096

RESUMEN

Sex determination is important in archeology and anthropology for the study of past societies, cultures, and human activities. Sex determination is also one of the most important components of individual identification in criminal investigations. We developed a new method of sex determination by detecting a single-nucleotide polymorphism in the amelogenin gene using amplified product-length polymorphisms in combination with sex-determining region Y analysis. We particularly focused on the most common types of postmortem DNA damage in ancient and forensic samples: fragmentation and nucleotide modification resulting from deamination. Amplicon size was designed to be less than 60 bp to make the method more useful for analyzing degraded DNA samples. All DNA samples collected from eight Japanese individuals (four male, four female) were evaluated correctly using our method. The detection limit for accurate sex determination was determined to be 20 pg of DNA. We compared our new method with commercial short tandem repeat analysis kits using DNA samples artificially fragmented by ultraviolet irradiation. Our novel method was the most robust for highly fragmented DNA samples. To deal with allelic dropout resulting from deamination, we adopted "bidirectional analysis," which analyzed samples from both sense and antisense strands. This new method was applied to 14 Jomon individuals (3500-year-old bone samples) whose sex had been identified morphologically. We could correctly identify the sex of 11 out of 14 individuals. These results show that our method is reliable for the sex determination of highly degenerated samples.


Asunto(s)
Amelogenina/genética , ADN/análisis , Polimorfismo de Nucleótido Simple/genética , Análisis para Determinación del Sexo , Proteína de la Región Y Determinante del Sexo/genética , Análisis del Polimorfismo de Longitud de Fragmentos Amplificados , Arqueología , Femenino , Medicina Legal , Humanos , Límite de Detección , Masculino , Repeticiones de Microsatélite/genética , Reacción en Cadena de la Polimerasa , Rayos Ultravioleta
20.
Anat Sci Int ; 81(1): 7-20, 2006 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-16526591

RESUMEN

Situs inversus totalis is well known, but its comprehensive description has been rare, especially on the internal view of the heart. For discussions based on recent results in developmental biology, the present study demonstrates a region- or part-specific manner of the inverted morphology found in a male donated cadaver and discusses the pathogenetic mechanisms of situs inversus in the human. Therein, clearly inverted morphologies existed in the coronary vessels, the apex position (dextracardia), connections between the heart and great vessels, the internal view of the atrium, the aortic arch with the three major branches, lung and liver segments and abdominal gastrointestinal tract. However, the ventricular internal view suggested incomplete laterality, such as tricuspid atrioventricular valves for both ventricles. The cardiac conductive system appeared not to be inverted but abnormal. The thoracic aorta and pulmonary artery took an L-spiral position with modifications. The inferior vena cava was located on the right side of the abdominal aorta. However, the left-sided kidney was located superior to the right-sided kidney. Similarly, the testicular vessels did not exhibit a clearly inverted morphology, but were almost normal. Therefore, the posterior mediastinal and retroperitoneal structures appeared to exhibit neutral laterality, incomplete inverted morphology or even normal morphology. According to the personal history and present histology, this specimen was unlikely to correspond to Kartagener's syndrome. The present observations seem to be consistent with recent findings in mutant models of laterality disturbances, in which a single gene or molecule is responsible for the changes in a region-specific manner.


Asunto(s)
Vasos Sanguíneos/patología , Riñón/patología , Miocardio/patología , Situs Inversus/patología , Anciano , Humanos , Hígado/patología , Masculino
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