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1.
Mech Ageing Dev ; 217: 111897, 2024 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-38109974

RESUMEN

During aging, general cellular processes, including autophagic clearance and immunological responses become compromised; therefore, identifying compounds that target these cellular processes is an important approach to improve our health span. The innate immune cGAS-STING pathway has emerged as an important signaling system in the organismal defense against viral and bacterial infections, inflammatory responses to cellular damage, regulation of autophagy, and tumor immunosurveillance. These key functions of the cGAS-STING pathway make it an attractive target for pharmacological intervention in disease treatments and in controlling inflammation and immunity. Here, we show that urolithin A (UA), an ellagic acid metabolite, exerts a profound effect on the expression of STING and enhances cGAS-STING activation and cytosolic DNA clearance in human cell lines. Animal laboratory models and limited human trials have reported no obvious adverse effects of UA administration. Thus, the use of UA alone or in combination with other pharmacological compounds may present a potential therapeutic approach in the treatment of human diseases that involves aberrant activation of the cGAS-STING pathway or accumulation of cytosolic DNA and this warrants further investigation in relevant transgenic animal models.


Asunto(s)
Cumarinas , Inflamación , Nucleotidiltransferasas , Animales , Humanos , Nucleotidiltransferasas/genética , ADN/metabolismo , Transducción de Señal/fisiología , Inmunidad Innata
2.
Nat Commun ; 13(1): 2012, 2022 04 19.
Artículo en Inglés | MEDLINE | ID: mdl-35440629

RESUMEN

Transcriptionally active loci are particularly prone to breakage and mounting evidence suggests that DNA Double-Strand Breaks arising in active genes are handled by a dedicated repair pathway, Transcription-Coupled DSB Repair (TC-DSBR), that entails R-loop accumulation and dissolution. Here, we uncover a function for the Bloom RecQ DNA helicase (BLM) in TC-DSBR in human cells. BLM is recruited in a transcription dependent-manner at DSBs where it fosters resection, RAD51 binding and accurate Homologous Recombination repair. However, in an R-loop dissolution-deficient background, we find that BLM promotes cell death. We report that upon excessive RNA:DNA hybrid accumulation, DNA synthesis is enhanced at DSBs, in a manner that depends on BLM and POLD3. Altogether our work unveils a role for BLM at DSBs in active chromatin, and highlights the toxic potential of RNA:DNA hybrids that accumulate at transcription-associated DSBs.


Asunto(s)
Cromatina , Roturas del ADN de Doble Cadena , Cromatina/genética , ADN/genética , ADN/metabolismo , Reparación del ADN , Humanos , ARN/genética , RecQ Helicasas/genética , RecQ Helicasas/metabolismo , Reparación del ADN por Recombinación
3.
J Exp Med ; 187(11): 1745-51, 1998 Jun 01.
Artículo en Inglés | MEDLINE | ID: mdl-9607916

RESUMEN

Rearranged immunoglobulin variable genes are extensively mutated after stimulation of B lymphocytes by antigen. Mutations are likely generated by an error-prone DNA polymerase, and the mismatch repair pathway may process the mispairs. To examine the role of the MSH2 mismatch repair protein in hypermutation, Msh2-/- mice were immunized with oxazolone, and B cells were analyzed for mutation in their VkappaOx1 light chain genes. The frequency of mutation in the repair-deficient mice was similar to that in Msh2+/+ mice, showing that MSH2-dependent mismatch repair does not cause hypermutation. However, there was a striking bias for mutations to occur at germline G and C nucleotides. The results suggest that the hypermutation pathway frequently mutates G.C pairs, and a MSH2-dependent pathway preferentially corrects mismatches at G and C.


Asunto(s)
Citosina , Reparación del ADN , Proteínas de Unión al ADN , Guanina , Región Variable de Inmunoglobulina/genética , Cadenas kappa de Inmunoglobulina/genética , Mutación , Proteínas Proto-Oncogénicas/fisiología , Animales , Composición de Base , Secuencia de Bases , Eliminación de Gen , Reordenamiento Génico de Linfocito B , Ratones , Ratones Endogámicos C57BL , Datos de Secuencia Molecular , Proteína 2 Homóloga a MutS , Ácidos Nucleicos Heterodúplex , Oxazolona/inmunología , Proteínas Proto-Oncogénicas/deficiencia , Proteínas Proto-Oncogénicas/genética
4.
Oncogene ; 26(26): 3811-22, 2007 May 31.
Artículo en Inglés | MEDLINE | ID: mdl-17173071

RESUMEN

The Werner syndrome protein (WRN) and chromatin assembly factor 1 (CAF-1) are both involved in the maintenance of genome stability. In response to DNA-damaging signals, both of these proteins relocate to sites where DNA synthesis occurs. However, the interaction between WRN and CAF-1 has not yet been investigated. In this report, we show that WRN interacts physically with the largest subunit of CAF-1, hp150, in vitro and in vivo. Although hp150 does not alter WRN catalytic activities in vitro, and the chromatin assembly activity of CAF-1 is not affected in the absence of WRN in vivo, this interaction may have an important role during the cellular response to DNA replication fork blockage and/or DNA damage signals. In hp150 RNA-mediated interference (RNAi) knockdown cells, WRN partially formed foci following hydroxyurea (HU) treatment. However, in the absence of WRN, hp150 did not relocate to form foci following exposure to HU and ultraviolet light. Thus, our results demonstrate that WRN responds to DNA damage before CAF-1 and suggest that WRN may recruit CAF-1, via interaction with hp150, to DNA damage sites during DNA synthesis.


Asunto(s)
Proteínas Cromosómicas no Histona/metabolismo , Daño del ADN/fisiología , Proteínas de Unión al ADN/metabolismo , RecQ Helicasas/metabolismo , Western Blotting , Factor 1 de Ensamblaje de la Cromatina , Exodesoxirribonucleasas , Técnica del Anticuerpo Fluorescente , Células HeLa , Humanos , Inmunoprecipitación , Transporte de Proteínas/fisiología , ARN Interferente Pequeño , Transfección , Helicasa del Síndrome de Werner
5.
Mech Ageing Dev ; 129(11): 681-91, 2008 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-19238688

RESUMEN

Human cells express five DNA helicases that are paralogs of Escherichia coli RecQ and which constitute the family of human RecQ helicases. Disease-causing mutations in three of these five human DNA helicases, BLM, WRN, and RECQL4, cause rare severe human genetic diseases with distinct clinical phenotypes characterized by developmental defects, skin abnormalities, genomic instability, and cancer susceptibility. Although biochemical and genetic evidence support roles for all five human RecQ helicases in DNA replication, DNA recombination, and the biological responses to DNA damage, many questions concerning the various functions of the human RecQ helicases remain unanswered. Researchers investigating human and non-human RecQ helicases held a workshop on May 27-28, 2008, at the University of Chicago Gleacher Center, during which they shared insights, discussed recent progress in understanding the biochemistry, biology, and genetics of the RecQ helicases, and developed research strategies that might lead to therapeutic approaches to the human diseases that result from mutations in RecQ helicase genes. Some workshop sessions were held jointly with members of a recently formed advocacy and support group for persons with Bloom's syndrome and their families. This report describes the outcomes and main discussion points of the workshop.


Asunto(s)
Síndrome de Bloom/enzimología , RecQ Helicasas/metabolismo , Envejecimiento/genética , Envejecimiento/metabolismo , Animales , Investigación Biomédica , Síndrome de Bloom/genética , Daño del ADN , Replicación del ADN , Humanos , Mutación , Neoplasias/enzimología , Neoplasias/genética , RecQ Helicasas/deficiencia , RecQ Helicasas/genética , Recombinación Genética , Grupos de Autoayuda
6.
Oncogene ; 25(14): 2119-23, 2006 Mar 30.
Artículo en Inglés | MEDLINE | ID: mdl-16288211

RESUMEN

A subset of DNA helicases, the RecQ family, has been found to be associated with the p53-mediated apoptotic pathway and is involved in maintaining genomic integrity. This family contains the BLM and WRN helicases, in which germline mutations are responsible for Bloom and Werner syndromes, respectively. TFIIH DNA helicases, XPB and XPD, are also components in this apoptotic pathway. We hypothesized that there may be some redundancy between helicases in their ability to complement the attenuated p53-mediated apoptotic levels seen in cells from individuals with diseases associated with these defective helicase genes. The attenuated apoptotic phenotype in Bloom syndrome cells was rescued not only by ectopic expression of BLM, but also by WRN or XPB, both 3' --> 5' helicases, but not expression of the 5' --> 3' helicase XPD. Overexpression of Sgs1, a WRN/BLM yeast homolog, corrected the reduction in BS cells only, which is consistent with Sgs1 being evolutionarily most homologous to BLM. A restoration of apoptotic levels in cells from WS, XPB or XPD patients was attained only by overexpression of the specific helicase. Our data suggest a limited redundancy in the pathways of these RecQ helicases in p53-induced apoptosis.


Asunto(s)
Apoptosis/fisiología , ADN Helicasas/metabolismo , Proteína p53 Supresora de Tumor/fisiología , Síndrome de Bloom/enzimología , Mutación de Línea Germinal , Humanos , Síndrome de Werner/enzimología
7.
Neuroscience ; 145(4): 1318-29, 2007 Apr 14.
Artículo en Inglés | MEDLINE | ID: mdl-17092652

RESUMEN

Accumulation of nuclear and mitochondrial DNA damage is thought to be particularly deleterious in post-mitotic cells, which cannot be replaced through cell division. Recent experimental evidence demonstrates the importance of DNA damage responses for neuronal survival. Here, we summarize current literature on DNA damage responses in the mammalian CNS in aging and neurodegeneration. Base excision repair (BER) is the main pathway for the removal of small DNA base modifications, such as alkylation, deamination and oxidation, which are generated as by-products of normal metabolism and accumulate with age in various experimental models. Using neuronal cell cultures, human brain tissue and animal models, we and others have shown an active BER pathway functioning in the brain, both in the mitochondrial and nuclear compartments. Mitochondrial DNA repair may play a more essential role in neuronal cells because these cells depend largely on intact mitochondrial function for energy metabolism. We have characterized several BER enzymes in mammalian mitochondria and have shown that BER activities change with age in mitochondria from different brain regions. Together, the results reviewed here advocate that mitochondrial DNA damage response plays an important role in aging and in the pathogenesis of neurodegenerative diseases.


Asunto(s)
Daño del ADN/genética , Reparación del ADN/genética , ADN Mitocondrial/genética , Enfermedades Neurodegenerativas/genética , Envejecimiento/genética , Envejecimiento/metabolismo , Animales , Encéfalo/metabolismo , Encéfalo/fisiopatología , Enzimas Reparadoras del ADN/genética , Humanos , Enfermedades Neurodegenerativas/metabolismo , Enfermedades Neurodegenerativas/fisiopatología , Neuronas/metabolismo
8.
Mol Cell Biol ; 9(4): 1594-603, 1989 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-2725518

RESUMEN

We have examined the effects of changes in cytosine methylation on DNA repair in UV-irradiated Chinese hamster ovary (CHO) cells. A hypomethylated derivative of the CHO K1B11 line, B11aza, was established by passaging B11 cells over several months in increasing concentrations of 5-azacytidine; greater than 60% demethylation was consistently demonstrated in these conditioned cells. Following a UV dose of 10 J/m2, the amount of repair replication performed within 24 h was approximately twofold higher in B11aza cells than in control B11 cells. Removal of T4 endonuclease V-sensitive sites (ESS) from specific restriction fragments within and around the dihydrofolate reductase (DHFR) gene was then examined in B11aza cells and compared with that in B11 cells. Although demethylation had little or no effect on repair in the 5' half of the DHFR gene, within a nontranscribed sequence immediately downstream from the gene, or within an extragenic region further downstream from the DHFR gene, significant increases in repair were observed at the 3' end of the DHFR gene and within an extragenic region upstream of the DHFR gene. However, the increases in DNA repair were not accompanied by any changes in overall cellular resistance to UV when colony-forming ability was assayed. We suggest that the level of DNA methylation may play an indirect role in the regulation of DNA repair, perhaps through an effect on chromatin structure or transcriptional activity.


Asunto(s)
Reparación del ADN , Dímeros de Pirimidina/metabolismo , Animales , Línea Celular , Cricetinae , Cricetulus , ADN/genética , ADN/metabolismo , Reparación del ADN/efectos de la radiación , Replicación del ADN , Femenino , Amplificación de Genes , Metilación , Ovario , Dímeros de Pirimidina/efectos de la radiación , Tetrahidrofolato Deshidrogenasa/genética , Rayos Ultravioleta
9.
Mol Cell Biol ; 15(7): 3722-30, 1995 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-7791779

RESUMEN

We have studied the effect of UV irradiation on the cell cycle progression of synchronized Chinese hamster ovary cells. Synchronization of cells in S or G2 phase was accomplished by the development of a novel protocol using mimosine, which blocks cell cycle progression at the G1/S boundary. After removal of mimosine, cells proceed synchronously through the S and G2 phases, allowing manipulation of cells at specific points in either phase. Synchronization of cells in G1 was achieved by release of cells after a period of serum starvation. Cells synchronized by these methods were UV irradiated at defined points in G1, S, and G2, and their subsequent progression through the cell cycle was monitored. UV irradiation of G1-synchronized cells caused a dose-dependent delay in entry into S phase. Irradiation of S-phase-synchronized cells inhibited progression through S phase and then resulted in accumulation of cells for a prolonged interval in G2. Apoptosis of a subpopulation of cells during this extended period was noted. UV irradiation of G2-synchronized cells caused a shorter G2 arrest. The arrest itself and its duration were dependent upon the timing (within G2 phase) of the irradiation and the UV dose, respectively. We have thus defined a previously undescribed (in mammalian cells) UV-responsive checkpoint in G2 phase. The implications of these findings with respect to DNA metabolism are discussed.


Asunto(s)
Fase G2/efectos de la radiación , Rayos Ultravioleta , Animales , Apoptosis/efectos de la radiación , Células CHO , Cricetinae , Daño del ADN/fisiología , Reparación del ADN/fisiología , Relación Dosis-Respuesta en la Radiación , Fase G1/efectos de los fármacos , Fase G1/efectos de la radiación , Fase G2/fisiología , Mimosina/farmacología , Dímeros de Pirimidina/metabolismo , Fase S/efectos de los fármacos , Fase S/efectos de la radiación
10.
Mol Cell Biol ; 15(7): 3731-7, 1995 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-7791780

RESUMEN

We have analyzed the fine structure of DNA repair in Chinese hamster ovary (CHO) cells within the G1 and G2 phases of the cell cycle. Repair of inactive regions of the genome has been suggested to increase in the G2 phase of the cell cycle compared with other phases. However, detailed studies of DNA repair in the G2 phase of the cell cycle have been hampered by technical limitations. We have used a novel synchronization protocol (D. K. Orren, L. N. Petersen, and V. A. Bohr, Mol. Cell. Biol. 15:3722-3730, 1995) which permitted detailed studies of the fine structure of DNA repair in G2. CHO cells were synchronized and UV irradiated in G1 or early G2. The rate and extent of removal of cyclobutane pyrimidine dimers from an inactive region of the genome and from both strands of the actively transcribed dihydrofolate reductase (DHFR) gene were examined within each phase. The repair of the transcribed strand of the DHFR gene was efficient in both G1 and G2, with no major differences between the two cell cycle phases. Neither the nontranscribed strand of the DHFR gene nor an inactive region of the genome was repaired in G1 or G2. CHO cells irradiated early in G2 were more resistant to UV irradiation than cells irradiated in late G1. Since we found no major difference in repair rates in G1 and G2, we suggest that G2 resistance can be attributed to the increased time (G2 and G1) available for repair before cells commit to DNA synthesis.


Asunto(s)
Reparación del ADN , Fase G1/genética , Fase G2/genética , Dímeros de Pirimidina/metabolismo , Tetrahidrofolato Deshidrogenasa/genética , Animales , Células CHO , Ciclo Celular/efectos de la radiación , Cricetinae , Daño del ADN , Relación Dosis-Respuesta en la Radiación , Citometría de Flujo , Factores de Tiempo , Rayos Ultravioleta
11.
Mol Cell Biol ; 11(6): 3095-104, 1991 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-1710024

RESUMEN

This report describes an unexpected difference in the efficiency of removal of UV-induced DNA damage in the c-myc locus in splenic B lymphoblasts from two inbred strains of mice. In cells from plasmacytoma-resistant DBA/2N mice, 35% of UV-induced damage in the regulatory and 5' flank of c-myc is removed by 12 h. However, in cells from plasmacytoma-susceptible BALB/cAn mice, damage is not removed from this region. In the protein-encoding region and 3' flank of c-myc as well as in two dihydrofolate reductase gene fragments, UV damage is repaired with similar efficiency in B lymphoblasts from both strains of mice. Furthermore, in the protein-encoding portion and 3' flank of c-myc, damage is selectively removed from only the transcribed strand. No repair is detected in the nontranscribed strand. In contrast, DNA repair in the 5' flank of c-myc is not strand specific; in DNA from DBA/2N cells, UV damage is rapidly removed from both the transcribed and nontranscribed strands. In BALB/cAn cells no repair was detected in either strand in the 5'flank, consistent with the results with double-stranded, nick-translated probes to this region of c-myc. In addition to the repair studies, we have detected post-UV-damage formation: in most of the genes studied, we find that additional T4 endonuclease-sensitive sites are formed in the DNA 2 h after irradiation. Our findings provide new insights into the details of gene-specific and strand-specific DNA repair and suggest that there may be close links between DNA repair and B-cell neoplastic development.


Asunto(s)
Reparación del ADN , ADN/efectos de la radiación , Genes myc , Plasmacitoma/genética , Proto-Oncogenes , Animales , Linfocitos B/fisiología , Linfocitos B/efectos de la radiación , Northern Blotting , ADN/genética , ADN/aislamiento & purificación , Daño del ADN , Reparación del ADN/efectos de la radiación , Replicación del ADN , Predisposición Genética a la Enfermedad , Inmunidad Innata/genética , Ratones , Ratones Endogámicos BALB C , Ratones Endogámicos DBA , Plasmacitoma/inmunología , ARN/genética , ARN/aislamiento & purificación , Mapeo Restrictivo , Tetrahidrofolato Deshidrogenasa/genética , Rayos Ultravioleta
12.
Mol Cell Biol ; 14(2): 1204-12, 1994 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-8289801

RESUMEN

Using an assay that measures the removal of UV-induced pyrimidine dimers in specific DNA sequences, we have found that the Pvt-1, immunoglobulin H-C alpha (IgH-C alpha), and IgL-kappa loci are poorly repaired in normal B lymphoblasts from plasmacytoma-susceptible BALB/cAnPt mice. Breaksites in these genes are associated with the chromosomal translocations that are found in > 95% of BALB/cAnPt plasmacytomas. In contrast to those from BALB/cAnPt mice, B lymphoblasts from plasmacytoma-resistant DBA/2N mice rapidly repair Pvt-1, IgH-C alpha, and IgL-kappa. Further, (BALB/cAnPt x DBA/2N)F1 hybrids, which are resistant to plasmacytoma development, carry an efficient (DBA/2N-like) repair phenotype. Analysis of allele-specific repair in the IgH-C alpha locus indicates that efficient repair is controlled by dominant, trans-acting factors. In the F1 heterozygotes, these factors promote efficient repair of BALB/cAnPt IgH-C alpha gene sequences. The same sequences are poorly repaired in the BALB/cAnPt parental strain. Analysis of the strand specificity of repair indicates that both strand-selective and nonselective forms of repair determine repair efficiency at the gene level in nonimmortalized murine B lymphoblasts.


Asunto(s)
Reparación del ADN/genética , Replicación del ADN , ADN/efectos de la radiación , Translocación Genética , Rayos Ultravioleta , Animales , Linfocitos B/metabolismo , Células Cultivadas , Cruzamientos Genéticos , ADN/genética , ADN/aislamiento & purificación , Genes de Inmunoglobulinas , Genes abl , Predisposición Genética a la Enfermedad , Inmunidad Innata/genética , Región de Cambio de la Inmunoglobulina/genética , Cadenas kappa de Inmunoglobulina/genética , Ratones , Ratones Endogámicos BALB C , Ratones Endogámicos DBA , Plasmacitoma/genética , Plasmacitoma/inmunología , Dímeros de Pirimidina , Mapeo Restrictivo
13.
Mol Cell Biol ; 12(9): 3689-98, 1992 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-1380646

RESUMEN

We have studied several aspects of DNA damage formation and repair in human ovarian cancer cell lines which have become resistant to cisplatin through continued exposure to the anticancer drug. The resistant cell lines A2780/cp70 and 2008/c13*5.25 were compared with their respective parental cell lines, A2780 and 2008. Cells in culture were treated with cisplatin, and the two main DNA lesions formed, intrastrand adducts and interstrand cross-links, were quantitated before and after repair incubation. This quantitation was done for total genomic lesions and at the level of individual genes. In the overall genome, the initial frequency of both cisplatin lesions assayed was higher in the parental than in the derivative resistant cell lines. Nonetheless, the total genomic repair of each of these lesions was not increased in the resistant cells. These differences in initial lesion frequency between parental and resistant cell lines were not observed at the gene level. Resistant and parental cells had similar initial frequencies of intrastrand adducts and interstrand cross-links in the dihydrofolate reductase (DHFR) gene and in several other genes after cisplatin treatment of the cells. There was no increase in the repair efficiency of intrastrand adducts in the DHFR gene in resistant cell lines compared with the parental partners. However, a marked and consistent repair difference between parental and resistant cells was observed for the gene-specific repair of cisplatin interstrand cross-links. DNA interstrand cross-links were removed from three genes, the DHFR, multidrug resistance (MDR1), and delta-globin genes, much more efficiently in the resistant cell lines than in the parental cell lines. Our findings suggest that acquired cellular resistance to cisplatin may be associated with increased gene-specific DNA repair efficiency of a specific lesion, the interstrand cross-link.


Asunto(s)
Cisplatino/farmacología , Reactivos de Enlaces Cruzados/farmacología , Reparación del ADN , Southern Blotting , Daño del ADN , Resistencia a Medicamentos/genética , Femenino , Genoma Humano , Humanos , Neoplasias Ováricas , Tetrahidrofolato Deshidrogenasa/genética , Células Tumorales Cultivadas , gammaglobulinas/genética
14.
Nucleic Acids Res ; 33(12): 3722-32, 2005.
Artículo en Inglés | MEDLINE | ID: mdl-16006620

RESUMEN

Mitochondrial DNA (mtDNA) contains high levels of oxidative damage relative to nuclear DNA. A full, functional DNA base excision repair (BER) pathway is present in mitochondria, to repair oxidative DNA lesions. However, little is known about the organization of this pathway within mitochondria. Here, we provide evidence that the mitochondrial BER proteins are not freely soluble, but strongly associated with an inner membrane-containing particulate fraction. Uracil DNA glycosylase, oxoguanine DNA glycosylase and DNA polymerase gamma activities all co-sedimented with this particulate fraction and were not dissociated from it by detergent (0.1% or 1.0% NP40) treatment. The particulate associations of these activities were not due to their binding mtDNA, which is itself associated with the inner membrane, as they also localized to the particulate fraction of mitochondria from 143B (TK-) rho(0) cells, which lack mtDNA. However, all of the BER activities were at least partially solubilized from the particulate fraction by treatment with 150-300 mM NaCl, suggesting that electrostatic interactions are involved in the association. The biological implications of the apparent immobilization of BER proteins are discussed.


Asunto(s)
Enzimas Reparadoras del ADN/análisis , ADN Mitocondrial/metabolismo , Membranas Intracelulares/enzimología , Mitocondrias/enzimología , Proteínas Mitocondriales/análisis , Fraccionamiento Celular , Línea Celular , Reparación del ADN , Enzimas Reparadoras del ADN/aislamiento & purificación , Humanos , Mitocondrias/genética , Proteínas Mitocondriales/aislamiento & purificación , Solubilidad , Electricidad Estática
15.
Mol Biol Cell ; 8(6): 1129-42, 1997 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-9201721

RESUMEN

We used genetically related Chinese hamster ovary cell lines proficient or deficient in DNA repair to determine the direct role of UV-induced DNA photoproducts in inhibition of DNA replication and in induction of G2 arrest and apoptosis. UV irradiation of S-phase-synchronized cells causes delays in completion of the S-phase sometimes followed by an extended G2 arrest and apoptosis. The effects of UV irradiation during the S-phase on subsequent cell cycle progression are magnified in repair-deficient cells, indicating that these effects are initiated by persistent DNA damage and not by direct UV activation of signal transduction pathways. Moreover, among the lesions introduced by UV irradiation, persistence of (6-4) photoproducts inhibits DNA synthesis much more than persistence of cyclobutane pyrimidine dimers (which appear to be efficiently bypassed by the DNA replication apparatus). Apoptosis begins approximately 24 h after UV irradiation of S-phase-synchronized cells, occurs to a greater extent in repair-deficient cells, and correlates well with the inability to escape from an extended late S-phase-G2 arrest. We also find that nucleotide excision repair activity (including its coupling to transcription) is similar in the S-phase to what we have previously measured in G1 and G2.


Asunto(s)
Apoptosis , Ciclo Celular , Daño del ADN , Fase S , Animales , Células CHO , Ciclo Celular/efectos de la radiación , Supervivencia Celular/efectos de los fármacos , Cricetinae , Daño del ADN/efectos de la radiación , Reparación del ADN , Replicación del ADN/efectos de los fármacos , Mimosina/farmacología , Dímeros de Pirimidina/metabolismo , Fase S/efectos de la radiación , Factores de Tiempo , Rayos Ultravioleta
16.
Mol Biol Cell ; 10(7): 2119-29, 1999 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-10397753

RESUMEN

The protein p21(Cip1, Waf1, Sdi1) is a potent inhibitor of cyclin-dependent kinases (CDKs). p21 can also block DNA replication through its interaction with the proliferating cell nuclear antigen (PCNA), which is an auxiliary factor for polymerase delta. PCNA is also implicated in the repair resynthesis step of nucleotide excision repair (NER). Previous studies have yielded contradictory results on whether p21 regulates NER through its interaction with PCNA. Resolution of this controversy is of interest because it would help understand how DNA repair and replication are regulated. Hence, we have investigated the effect of p21 on NER both in vitro and in vivo using purified fragments of p21 containing either the CDK-binding domain (N terminus) or the PCNA binding domain (C terminus) of the protein. In the in vitro studies, DNA repair synthesis was measured in extracts from normal human fibroblasts using plasmids damaged by UV irradiation. In the in vivo studies, we used intact and permeabilized cells. The results show that the C terminus of the p21 protein inhibits NER both in vitro and in vivo. These are the first in vivo studies in which this question has been examined, and we demonstrate that inhibition of NER by p21 is not merely an artificial in vitro effect. A 50% inhibition of in vitro NER occurred at a 50:1 molar ratio of p21 C-terminus fragment to PCNA monomer. p21 differentially regulates DNA repair and replication, with repair being much less sensitive to inhibition than replication. Our in vivo results suggest that the inhibition occurs at the resynthesis step of the repair process. It also appears that preassembly of PCNA at repair sites mitigates the inhibitory effect of p21. We further demonstrate that the inhibition of DNA repair is mediated via binding of p21 to PCNA. The N terminus of p21 had no effect on DNA repair, and the inhibition of DNA repair by the C terminus of p21 was relieved by the addition of purified PCNA protein.


Asunto(s)
Ciclinas/metabolismo , Reparación del ADN , Línea Celular , Permeabilidad de la Membrana Celular , Inhibidor p21 de las Quinasas Dependientes de la Ciclina , Ciclinas/genética , Ciclinas/aislamiento & purificación , Electroporación , Humanos , Fragmentos de Péptidos/metabolismo , Antígeno Nuclear de Célula en Proliferación/metabolismo , Proteínas Recombinantes/genética , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo
17.
Mol Biol Cell ; 10(11): 3583-94, 1999 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-10564257

RESUMEN

Cockayne syndrome (CS) is a human genetic disorder characterized by UV sensitivity, developmental abnormalities, and premature aging. Two of the genes involved, CSA and CSB, are required for transcription-coupled repair (TCR), a subpathway of nucleotide excision repair that removes certain lesions rapidly and efficiently from the transcribed strand of active genes. CS proteins have also been implicated in the recovery of transcription after certain types of DNA damage such as those lesions induced by UV light. In this study, site-directed mutations have been introduced to the human CSB gene to investigate the functional significance of the conserved ATPase domain and of a highly acidic region of the protein. The CSB mutant alleles were tested for genetic complementation of UV-sensitive phenotypes in the human CS-B homologue of hamster UV61. In addition, the CSB mutant alleles were tested for their ability to complement the sensitivity of UV61 cells to the carcinogen 4-nitroquinoline-1-oxide (4-NQO), which introduces bulky DNA adducts repaired by global genome repair. Point mutation of a highly conserved glutamic acid residue in ATPase motif II abolished the ability of CSB protein to complement the UV-sensitive phenotypes of survival, RNA synthesis recovery, and gene-specific repair. These data indicate that the integrity of the ATPase domain is critical for CSB function in vivo. Likewise, the CSB ATPase point mutant failed to confer cellular resistance to 4-NQO, suggesting that ATP hydrolysis is required for CSB function in a TCR-independent pathway. On the contrary, a large deletion of the acidic region of CSB protein did not impair the genetic function in the processing of either UV- or 4-NQO-induced DNA damage. Thus the acidic region of CSB is likely to be dispensable for DNA repair, whereas the ATPase domain is essential for CSB function in both TCR-dependent and -independent pathways.


Asunto(s)
Adenosina Trifosfatasas/genética , ADN Helicasas/genética , Reparación del ADN/genética , 4-Nitroquinolina-1-Óxido/farmacología , Adenosina Trifosfatasas/química , Secuencia de Aminoácidos , Animales , Línea Celular , Supervivencia Celular , Células Clonales/efectos de la radiación , Síndrome de Cockayne/genética , Cricetinae , Daño del ADN , ADN Helicasas/química , Enzimas Reparadoras del ADN , Humanos , Datos de Secuencia Molecular , Mutagénesis Sitio-Dirigida , Proteínas de Unión a Poli-ADP-Ribosa , Dímeros de Pirimidina/genética , ARN Mensajero/metabolismo , Tetrahidrofolato Deshidrogenasa/genética , Transfección , Rayos Ultravioleta
18.
Mol Biol Cell ; 10(8): 2655-68, 1999 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-10436020

RESUMEN

Werner syndrome (WS) is a human progeroid syndrome characterized by the early onset of a large number of clinical features associated with the normal aging process. The complex molecular and cellular phenotypes of WS involve characteristic features of genomic instability and accelerated replicative senescence. The gene involved (WRN) was recently cloned, and its gene product (WRNp) was biochemically characterized as a helicase. Helicases play important roles in a variety of DNA transactions, including DNA replication, transcription, repair, and recombination. We have assessed the role of the WRN gene in transcription by analyzing the efficiency of basal transcription in WS lymphoblastoid cell lines that carry homozygous WRN mutations. Transcription was measured in permeabilized cells by [3H]UTP incorporation and in vitro by using a plasmid template containing the RNA polymerase II (RNA pol II)-dependent adenovirus major late promoter. With both of these approaches, we find that the transcription efficiency in different WS cell lines is reduced to 40-60% of the transcription in cells from normal individuals. This defect can be complemented by the addition of normal cell extracts to the chromatin of WS cells. Addition of purified wild-type WRNp but not mutated WRNp to the in vitro transcription assay markedly stimulates RNA pol II-dependent transcription carried out by nuclear extracts. A nonhelicase domain (a direct repeat of 27 amino acids) also appears to have a role in transcription enhancement, as revealed by a yeast hybrid-protein reporter assay. This is further supported by the lack of stimulation of transcription when mutant WRNp lacking this domain was added to the in vitro assay. We have thus used several approaches to show a role for WRNp in RNA pol II transcription, possibly as a transcriptional activator. A deficit in either global or regional transcription in WS cells may be a primary molecular defect responsible for the WS clinical phenotype.


Asunto(s)
ADN Helicasas/genética , ADN Helicasas/metabolismo , ARN Polimerasa II/genética , Transcripción Genética , Secuencia de Aminoácidos , Extractos Celulares , Línea Celular , Permeabilidad de la Membrana Celular , Núcleo Celular/metabolismo , Cromatina/genética , ADN Helicasas/aislamiento & purificación , Exodesoxirribonucleasas , Técnica del Anticuerpo Fluorescente , Prueba de Complementación Genética , Humanos , Datos de Secuencia Molecular , Mutación , Plásmidos/genética , ARN/biosíntesis , RecQ Helicasas , Secuencias Repetitivas de Aminoácido , Síndrome de Werner/genética , Síndrome de Werner/patología , Helicasa del Síndrome de Werner
19.
Mol Cell Biol ; 37(16)2017 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-28559431

RESUMEN

We have detected DNA polymerase beta (Polß), known as a key nuclear base excision repair (BER) protein, in mitochondrial protein extracts derived from mammalian tissue and cells. Manipulation of the N-terminal sequence affected the amount of Polß in the mitochondria. Using Polß fragments, mitochondrion-specific protein partners were identified, with the interactors functioning mainly in DNA maintenance and mitochondrial import. Of particular interest was the identification of the proteins TWINKLE, SSBP1, and TFAM, all of which are mitochondrion-specific DNA effectors and are known to function in the nucleoid. Polß directly interacted functionally with the mitochondrial helicase TWINKLE. Human kidney cells with Polß knockout (KO) had higher endogenous mitochondrial DNA (mtDNA) damage. Mitochondrial extracts derived from heterozygous Polß mouse tissue and KO cells had lower nucleotide incorporation activity. Mouse-derived Polß null fibroblasts had severely affected metabolic parameters. Indeed, gene knockout of Polß caused mitochondrial dysfunction, including reduced membrane potential and mitochondrial content. We show that Polß is a mitochondrial polymerase involved in mtDNA maintenance and is required for mitochondrial homeostasis.

20.
Nucleic Acids Res ; 28(23): 4674-8, 2000 Dec 01.
Artículo en Inglés | MEDLINE | ID: mdl-11095677

RESUMEN

In mammalian cells, the rate of nucleotide excision repair of UV dimers is heterogeneous throughout the genome, with repair occurring more rapidly in the transcribed strand of active genes than in the genome overall. This repair pathway is termed transcription-coupled repair (TCR) and is thought to permit the rapid resumption of RNA synthesis following UV irradiation. To evaluate the inducibility of the TCR process, we examined the repair of UV-induced cyclobutane pyrimidine dimers (CPDs) at the level of the gene following exposure of hamster cells to a sub-lethal UV fluence, 3 h prior to a higher dose. Repair was detected by a well-established technique allowing quantification of CPDs at the level of a specific strand by Southern blot hybridization. Here, we show that prior low-dose irradiation clearly enhanced the early rate of CPD removal in the transcribed strand of the active DHFR gene. Furthermore, the RNA synthesis recovery following UV exposure was stimulated by the priming UV dose. Thus, we provide evidence for an inducible TCR response to CPDs in hamster cells. This pathway is independent of the p53 activation, since the hamster cell line that we used expresses high levels of mutant p53 protein.


Asunto(s)
Reparación del ADN , Transcripción Genética/genética , Animales , Células CHO , Cricetinae , Daño del ADN , Dímeros de Pirimidina/genética , Dímeros de Pirimidina/efectos de la radiación , ARN/genética , ARN/metabolismo , Tetrahidrofolato Deshidrogenasa/genética
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