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1.
Biochim Biophys Acta Gen Subj ; 1862(3): 485-494, 2018 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-29107813

RESUMEN

We report, based on biophysical studies and molecular mechanical calculations that curcumin binds DNA hairpin in the minor groove adjacent to the loop region forming a stable complex. UV-Vis and fluorescence spectroscopy indicated interaction of curcumin with DNA hairpin. In this novel binding motif, two É£ H of curcumin heptadiene chain are closely positioned to the A16-H8 and A17-H8, while G12-H8 is located in the close proximity of curcumin α H. Molecular dynamics (MD) simulations suggest, the complex is stabilized by noncovalent forces including; π-π stacking, H-bonding and hydrophobic interactions. Nuclear magnetic resonance (NMR) spectroscopy in combination with molecular dynamics simulations indicated curcumin is bound in the minor groove, while circular dichroism (CD) spectra suggested minute enhancement in base stacking and a little change in DNA helicity, without significant conformational change of DNA hairpin structure. The DNA:curcumin complex formed with FdU nucleotides rather than Thymidine, demonstrated enhanced cytotoxicity towards oral cancer cells relative to the only FdU substituted hairpin. Fluorescence co-localization demonstrated stability of the complex in biologically relevant conditions, including its cellular uptake. Acridine orange/EtBr staining further confirmed the enhanced cytotoxic effects of the complex, suggesting apoptosis as mode of cell death. Thus, curcumin can be noncovalently complexed to small DNA hairpin for cellular delivery and the complex showed increased cytotoxicity in combination with FdU nucleotides, demonstrating its potential for advanced cancer therapy.


Asunto(s)
Anticarcinógenos/farmacología , Antineoplásicos Fitogénicos/farmacología , Curcumina/farmacología , ADN/efectos de los fármacos , Floxuridina/farmacología , Anticarcinógenos/química , Antineoplásicos Fitogénicos/química , Apoptosis/efectos de los fármacos , Línea Celular Tumoral , Dicroismo Circular , Curcumina/química , Sinergismo Farmacológico , Floxuridina/metabolismo , Humanos , Modelos Moleculares , Simulación de Dinámica Molecular , Resonancia Magnética Nuclear Biomolecular , Conformación de Ácido Nucleico/efectos de los fármacos , Espectrometría de Fluorescencia , Espectrofotometría Ultravioleta
2.
Phys Chem Chem Phys ; 20(31): 20476-20488, 2018 Aug 08.
Artículo en Inglés | MEDLINE | ID: mdl-30043811

RESUMEN

The development of base pair selective fluorescent binding probes and their interaction mode with nucleic acids have created great interest for sensing and biomedical applications. Herein, we have used chicken egg shell membrane (ESM) as a cost effective easily available protein source for the synthesis of highly fluorescent carbon dots. The detailed characterizations have confirmed the in situ formation of heteroatom doped graphitic carbon nanodots (CDs) from ESM. The intrinsic fluorescence property of the material has been utilized for the label free binding of duplex deoxyribonucleic acid (DNA). The interaction of different natural and synthetic DNAs with carbon dots resulted in the enhancement of fluorescence characteristics of the latter. Analysis of the binding data obtained from steady state fluorescence studies revealed a selective and stronger affinity of CDs to the adenine-thymine (AT) base pair rich double stranded DNA (ds DNA) than that of the guanine-cytosine (GC) pair rich ds DNA. Base pair specific binding was further validated from isothermal titration calorimetry (ITC) and melting temperature data. The thermodynamic profile revealed endothermic binding that was driven by the hydrophobic interaction at the nano-bio interfaces. The results reveal the potential of carbon dots as a new and promising fluorescent probe for base pair selective and sequence specific DNA recognition.


Asunto(s)
Carbono/química , ADN/metabolismo , Cáscara de Huevo/química , Puntos Cuánticos/metabolismo , Animales , Emparejamiento Base , Calorimetría , Pollos , ADN/química , Colorantes Fluorescentes/química , Colorantes Fluorescentes/metabolismo , Interacciones Hidrofóbicas e Hidrofílicas , Tamaño de la Partícula , Puntos Cuánticos/química , Espectrometría de Fluorescencia , Termodinámica , Temperatura de Transición , Membrana Vitelina/química
3.
J Mol Recognit ; 30(10)2017 10.
Artículo en Inglés | MEDLINE | ID: mdl-28503738

RESUMEN

Study on anticancer agents that act via stabilization of telomeric G-quadruplex DNA has emerged as novel and exciting field for anticancer drug discovery. The interaction of carbohydrate containing anticancer alkaloid aristololactam-ß-D-glucoside (ADG) with human telomeric G-quadruplex DNA sequence was characterized by different biophysical techniques. The binding parameters were compared with daunomycin (DAN), a well-known chemotherapeutic drug. The Scatchard binding isotherms revealed noncooperative binding for both with the binding affinity values of (1.01 ± 0.05) × 106 and (1.78 ± 0.18) × 106 M-1 for ADG and DAN, respectively. Circular dichroism, ferrocyanide quenching study, anisotropy study, thiazole orange displacement, optical melting, differential scanning calorimetry study, and molecular docking study suggest significant stacking and stabilizing efficiency of ADG with comparison to DAN. The energetics of the interaction for ADG and DAN revealed that both reactions were predominantly entropy driven. Negative heat capacity values were obtained from the temperature dependence of the enthalpy change. The standard molar Gibbs energy change exhibited only marginal alterations with temperature suggesting the occurrence of enthalpy-entropy compensation. These findings indicate that ADG can act as a stabilizer of telomeric G-quadruplex DNA and thereby can be considered as a potential telomerase inhibitor.


Asunto(s)
Antineoplásicos/farmacología , Ácidos Aristolóquicos/farmacología , ADN/efectos de los fármacos , Daunorrubicina/farmacología , G-Cuádruplex/efectos de los fármacos , Glucósidos/farmacología , Telómero/efectos de los fármacos , Anisotropía , Ácidos Aristolóquicos/química , Benzotiazoles/química , Calorimetría , Rastreo Diferencial de Calorimetría , Dicroismo Circular , Daunorrubicina/química , Glucósidos/química , Humanos , Simulación del Acoplamiento Molecular , Desnaturalización de Ácido Nucleico , Quinolinas/química , Espectrometría de Fluorescencia , Termodinámica
4.
Phys Chem Chem Phys ; 18(17): 12270-7, 2016 04 28.
Artículo en Inglés | MEDLINE | ID: mdl-27081680

RESUMEN

We investigate the interaction of hydrophilic blue emitting carbon spindles with various deoxyribonucleic acids (DNA) having different base pair compositions, such as Herring testes (HT), calf thymus (CT), Escherichia coli (EC) and Micrococcus lysodeikticus (ML) DNA, to understand the mode of interaction. Interestingly, the fluorescent carbon spindles selectively interacted with E. coli DNA resulting in enhanced fluorescence of the former. Interaction of the same carbon with other DNAs exhibited insignificant changes in fluorescence. In addition, in the presence of EC DNA, the D band in the Raman spectrum attributed to the defect state completely disappeared, resulting in enhanced crystallinity. Microscopy images confirmed the wrapping of DNA on the carbon spindles leading to the assembly of spindles in the form of flowers. Dissociation of double-stranded DNA occurred upon interaction with carbon spindles, resulting in selective E. coli DNA interaction. The carbon spindles also exhibited a similar fluorescence enhancement upon treating with E. coli bacteria. These results confirm the possibility of E. coli detection in water and other liquid foods using such fluorescent carbon.


Asunto(s)
Carbono/química , ADN Bacteriano/análisis , Escherichia coli/genética , Colorantes Fluorescentes/química , Animales , Bovinos , Dicroismo Circular , ADN/análisis , ADN/química , ADN Bacteriano/química , Peces/metabolismo , Masculino , Micrococcus/genética , Conformación de Ácido Nucleico , Espectrofotometría Ultravioleta , Espectroscopía Infrarroja por Transformada de Fourier , Testículo/metabolismo
5.
Phys Chem Chem Phys ; 18(46): 31622-31633, 2016 Nov 23.
Artículo en Inglés | MEDLINE | ID: mdl-27834981

RESUMEN

A ternary nanostructured photocatalyst consisting of ZnO/TiO2/Au was designed to achieve an enhanced solar absorption due to the coupling of surface enhanced plasmonic absorption of metal and semiconductor excitons. TiO2 coated ZnO rods with an aspect ratio of 8-12 were decorated with citrate capped gold nanoparticles for photocatalytic degradation of organic pollutants in simulated waste water under solar irradiation. Simulated waste water was prepared so as to get a mixture exhibiting a wide range of spectral distribution in the UV-visible region by deliberately mixing congo red, methylene blue and malachite green. Photo-oxidation of few phenolic compounds such as phenol, 4-chlorophenol and polycyclic aromatic hydrocarbons viz. anthracene and phenanthrene were also investigated in order to rule out the visible light sensitization of the dye molecules and confirm the photocatalytic efficacy of the ternary composite for a wide range of water pollutants under simulated solar irradiation. The composite exhibited enhanced photocatalytic activity and photoelectrochemical stability upon UV and visible light exposure. This enhanced efficiency was also corroborated with the photocarrier lifetime and chronoamperometric studies. Under simulated solar irradiation, UV light induced well separated charge carriers coupled with the visible light induced local surface plasmon resonance of AuNPs to exert significantly enhanced photocatalytic activity in a broad spectral region. This type of material may evolve as a novel photocatalyst for the efficient removal of organic contaminants in waste water and photoelectrochemical water splitting under the solar spectrum.

6.
J Org Chem ; 79(21): 9958-69, 2014 Nov 07.
Artículo en Inglés | MEDLINE | ID: mdl-25329771

RESUMEN

Bis-, tris-, and tetrakisuracil-substituted 12-, 13-, 17-, and 21-membered macrocyclic nucleoside analogues with polyether linkages, including C2-symmetric molecules, have been synthesized through coupling of two appropriately allylated sugar derivatives, derived from D-glucose, followed by a sequential ring-closing metathesis reaction using Grubbs catalysts, double-bond reduction, and nucleoside base insertion under Vorbrüggen reaction conditions. Spectroscopic studies on the interaction of these nucleoside analogues with small molecules, such as the alkaloids berberine and palmatine and the DNA intercalator ethidium bromide, revealed a change in the absorbance and fluorescence of the small molecules suggesting the potential use of these nucleoside molecules as a carrier of small molecules in biological systems. Circular dichroism studies indicated that the complexes of the nucleosides with small molecules undergo aggregation/self-organization. This has been further evidenced by a SEM experiment showing the binding of berberine with one of the nucleoside derivatives, which confirms the occurrence of secondary structure reorganization.


Asunto(s)
Carbohidratos/química , Éteres/química , Compuestos Macrocíclicos/química , Nucleósidos/química , Dicroismo Circular , Glicosilación
7.
Clin Respir J ; 18(5): e13759, 2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38714529

RESUMEN

INTRODUCTION: Chest radiograph and computed tomography (CT) scans can accidentally reveal pulmonary nodules. Malignant and benign pulmonary nodules can be difficult to distinguish without specific imaging features, such as calcification, necrosis, and contrast enhancement. However, these lesions may exhibit different image texture characteristics which cannot be assessed visually. Thus, a computer-assisted quantitative method like histogram analysis (HA) of Hounsfield unit (HU) values can improve diagnostic accuracy, reducing the need for invasive biopsy. METHODS: In this exploratory control study, nonenhanced chest CT images of 20 patients with benign (10) and cancerous (10) lesion were selected retrospectively. The appearances of benign and malignant lesions were very similar in chest CT images, and only pathology report was used to discriminate them. Free hand region of interest (ROI) was inserted inside the lesion for all slices of each lesion. Mean, minimum, maximum, and standard deviations of HU values were recorded and used to make HA. RESULTS: HA showed that the most malignant lesions have a mean HU value between 30 and 50, a maximum HU less than 150, and a minimum HU between -30 and 20. Lesions outside these ranges were mostly benign. CONCLUSION: Quantitative CT analysis may differentiate malignant from benign lesions without specific malignancy patterns on unenhanced chest CT image.


Asunto(s)
Neoplasias Pulmonares , Tomografía Computarizada por Rayos X , Humanos , Tomografía Computarizada por Rayos X/métodos , Estudios Retrospectivos , Masculino , Femenino , Neoplasias Pulmonares/diagnóstico por imagen , Neoplasias Pulmonares/patología , Persona de Mediana Edad , Anciano , Diagnóstico Diferencial , Adulto , Radiografía Torácica/métodos , Pulmón/diagnóstico por imagen , Pulmón/patología
8.
Blood Adv ; 8(2): 441-452, 2024 01 23.
Artículo en Inglés | MEDLINE | ID: mdl-37773781

RESUMEN

ABSTRACT: Hemophilia B (HB) is caused by an inherited deficiency of plasma coagulation factor IX (FIX). Approximately 60% of pediatric patients with HB possess a severe form of FIX deficiency (<1% FIX activity). Treatment typically requires replacement therapy through the administration of FIX. However, exogenous FIX has a limited functional half-life, and the natural anticoagulant protein S (PS) inhibits activated FIX (FIXa). PS ultimately limits thrombin formation, which limits plasma coagulation. This regulation of FIXa activity by PS led us to test whether inhibiting PS would extend the functional half-life of FIX and thereby prolong FIX-based HB therapy. We assayed clotting times and thrombin generation to measure the efficacy of a PS antibody for increasing FIX activity in commercially obtained plasma and plasma from pediatric patients with HB. We included 11 pediatric patients who lacked additional comorbidities and coagulopathies. In vivo, we assessed thrombus formation in HB mice in the presence of the FIXa ± PS antibody. We found an accelerated rate of clotting in the presence of PS antibody. Similarly, the peak thrombin formed was significantly greater in the presence of the PS antibody, even in plasma from patients with severe HB. Furthermore, HB mice injected with PS antibody and FIX had a 4.5-fold higher accumulation of fibrin at the thrombus induction site compared with mice injected with FIX alone. Our findings imply that a PS antibody would be a valuable adjunct to increase the effectiveness of FIX replacement therapy in pediatric patients who have mild, moderate, and severe HB.


Asunto(s)
Hemofilia B , Trombosis , Humanos , Ratones , Niño , Animales , Hemofilia B/tratamiento farmacológico , Trombina/metabolismo , Factor IX/uso terapéutico , Factor IX/metabolismo , Factor IXa/metabolismo , Anticuerpos
9.
Iran J Med Sci ; 47(4): 338-349, 2022 07.
Artículo en Inglés | MEDLINE | ID: mdl-35919083

RESUMEN

Background: The present study aimed to evaluate the effectiveness of ultra-low-dose (ULD) chest computed tomography (CT) in comparison with the routine dose (RD) CT images in detecting lung lesions related to COVID-19. Methods: A prospective study was conducted during April-September 2020 at Shahid Faghihi Hospital affiliated with Shiraz University of Medical Sciences, Shiraz, Iran. In total, 273 volunteers with suspected COVID-19 participated in the study and successively underwent RD-CT and ULD-CT chest scans. Two expert radiologists qualitatively evaluated the images. Dose assessment was performed by determining volume CT dose index, dose length product, and size-specific dose estimate. Data analysis was performed using a ranking test and kappa coefficient (κ). P<0.05 was considered statistically significant. Results: Lung lesions could be detected with both RD-CT and ULD-CT images in patients with suspected or confirmed COVID-19 (κ=1.0, P=0.016). The estimated effective dose for the RD-CT protocol was 22-fold higher than in the ULD-CT protocol. In the case of the ULD-CT protocol, sensitivity, specificity, accuracy, and positive predictive value for the detection of consolidation were 60%, 83%, 80%, and 20%, respectively. Comparably, in the case of RD-CT, these percentages for the detection of ground-glass opacity (GGO) were 62%, 66%, 66%, and 18%, respectively. Assuming the result of real-time polymerase chain reaction as true-positive, analysis of the receiver-operating characteristic curve for GGO detected using the ULD-CT protocol showed a maximum area under the curve of 0.78. Conclusion: ULD-CT, with 94% dose reduction, can be an alternative to RD-CT to detect lung lesions for COVID-19 diagnosis and follow-up.An earlier preliminary report of a similar work with a lower sample size was submitted to the arXive as a preprint. The preprint is cited as: https://arxiv.org/abs/2005.03347.


Asunto(s)
COVID-19 , Prueba de COVID-19 , Humanos , Pulmón/diagnóstico por imagen , Estudios Prospectivos , Dosis de Radiación , Tomografía Computarizada por Rayos X/métodos
10.
Phys Med ; 95: 25-31, 2022 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-35085906

RESUMEN

PURPOSE: Several investigations are being carried since the past decade to use gold nanoparticles' (AuNP) suspensions as contrast agents (CA) for imaging in Computed Tomography. For this, the optimal size of AuNP has received considerable attention, which is addressed here. MATERIAL AND METHODS: In this theoretical study, effective attenuation coefficient for a single spherical shaped AuNP is first calculated from the first principles, as a function of the nanoparticle radius 'r', with µ(E) being the attenuation coefficient of the material for a given energy E. This result is extended to derive a formula for the attenuation coefficient and mass attenuation coefficient of a suspension of AuNP. RESULTS: It is seen that the effective mass attenuation coefficient of the nanoparticles is a decreasing function of α(E) = 2µ(E)r and falls inversely with α(E), for large values of α(E) ≫ 1, there being very little change for α ≤ 1. CONCLUSION: The paper shows that for nanoparticles, less than 100 nm in diameter the linear attenuation coefficient of the colloidal suspension has no dependence on the nanoparticles' size and depends only on the concentration of nanoparticle material present in the suspension.


Asunto(s)
Oro , Nanopartículas del Metal , Medios de Contraste , Radio (Anatomía) , Tomografía Computarizada por Rayos X/métodos
11.
Phys Med ; 101: 158-164, 2022 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-36007404

RESUMEN

BACKGROUND: Non-invasive DECT based characterization of renal stones using their effective atomic number (Zeff) and the electron density (ρe) in patients. AIM: This paper aims to develop a method for in-vivo characterization of renal stone. Differentiation of renal stones in-vivo especially sub types of calcium stones have very important advantage for better judgement of treatment modality. MATERIALS AND METHODS: 50 extracted renal stones were scanned ex-vivo using dual energy CT scanner. A method was developed to characterize these renal stones using effective atomic number and electron density obtained from dual energy CT data. The method and formulation developed in ex-vivo experiments was applied in in-vivo study of 50 randomly selected patients of renal stones who underwent dual energy CT scan. RESULTS: The developed method was able to characterize Calcium Oxalate Monohydrate (COM) and the combination of COM and Calcium Oxalate Dihydrate (COD) stones non-invasively in patients with a sensitivity of 81% and 83%respectively. The method was also capable of differentiating Uric, Cystine and mixed stones with the sensitivity of 100, 100 and 85.71% respectively. CONCLUSION: The developed dual energy CT based method was capable of differentiating sub types of calcium stones which is not differentiable on single energy or dual energy CT images.


Asunto(s)
Calcio , Cálculos Renales , Oxalato de Calcio , Humanos , Riñón , Cálculos Renales/diagnóstico por imagen , Tomografía Computarizada por Rayos X/métodos
12.
ACS Omega ; 7(6): 4932-4944, 2022 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-35187312

RESUMEN

Protein-ligand interaction studies are useful to determine the molecular mechanism of the binding phenomenon, leading to the establishment of the structure-function relationship. Here, we report the binding of well-known antibiotic sulfonamide drugs (sulfamethazine, SMZ; and sulfadiazine, SDZ) with heme protein myoglobin (Mb) using spectroscopic, calorimetric, ζ potential, and computational methods. Formation of a 1:1 complex between the ligand and Mb through well-defined equilibrium was observed. The binding constants obtained between Mb and SMZ/SDZ drugs were on the order of 104 M-1. SMZ with two additional methyl (-CH3) substitutions has higher affinity than SDZ. Upon drug binding, a notable loss in the helicity (via circular dichroism) and perturbation of the three-dimensional (3D) protein structure (via infrared and synchronous fluorescence experiments) were observed. The binding also indicated the dominance of non-polyelectrolytic forces between the amino acid residues of the protein and the drugs. The ligand-protein binding distance signified high probability of energy transfer between them. Destabilization of the protein structure upon binding was evident from differential scanning calorimetry results and ζ potential analyses. Molecular docking presented the best probable binding sites of the drugs inside protein pockets. Thus, the present study explores the potential binding characteristics of two sulfonamide drugs (with different substitutions) with myoglobin, correlating the structural and energetic aspects.

13.
Curr Microbiol ; 61(3): 203-9, 2010 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-20306316

RESUMEN

Mature and healthy root nodules of Vigna mungo appeared to contain higher amount of indole-acetic acid (IAA) than non-nodulated roots. Dual effect of VAM fungus, Glomus fasciculatum and the nitrogen-fixing bacteria, Rhizobium sp. on the nodulation of roots of V. mungo was studied. It was recorded that the roots which were inoculated simultaneously with both the symbionts i.e., G. fasciculatum and Rhizobium exhibited greater amount of IAA production than the non-inoculated roots. A tryptophan pool present in the mature nodules and young leaves might serve as a precursor for IAA production in the roots and in the nodules. Activity of IAA-metabolizing enzymes, such as IAA oxidase, peroxidase, and polyphenol oxidase was investigated which indicates the active metabolism of IAA in roots and nodules. The Rhizobium symbiont isolated from fresh nodules of V. mungo produced significant amount of IAA under in vitro condition when tryptophan was added to the medium as precursor. Present study represents some beneficial effects of Rhizobium and G. fasciculatum on the production and metabolism of IAA in roots and nodules of V. mungo. The important physiological implication of the study on IAA production and its metabolism in Rhizobium-Legume-VAM tripartite symbiosis is certainly representing a new approach to satisfy the hormonal balance in the host plant.


Asunto(s)
Fabaceae/microbiología , Glomeromycota/metabolismo , Ácidos Indolacéticos/metabolismo , Micorrizas/metabolismo , Raíces de Plantas/microbiología , Rhizobium/metabolismo , Simbiosis , Fabaceae/química , Fabaceae/metabolismo , Monofenol Monooxigenasa/análisis , Peroxidasa/análisis , Peroxidasas/análisis , Hojas de la Planta/química , Raíces de Plantas/química , Raíces de Plantas/metabolismo , Triptófano/análisis
14.
Aging (Albany NY) ; 12(16): 15954-15961, 2020 08 19.
Artículo en Inglés | MEDLINE | ID: mdl-32826388

RESUMEN

The COVID-19 pandemic has caused monumental mortality, and there are still no adequate therapies. Most severely ill COVID-19 patients manifest a hyperactivated immune response, instigated by interleukin 6 (IL6) that triggers a so called "cytokine storm" and coagulopathy. Hypoxia is also associated with COVID-19. So far overlooked is the fact that both IL6 and hypoxia depress the abundance of a key anticoagulant, Protein S. We speculate that the IL6-driven cytokine explosion plus hypoxemia causes a severe drop in Protein S level that exacerbates the thrombotic risk in COVID-19 patients. Here we highlight a mechanism by which the IL6-hypoxia curse causes a deadly hypercoagulable state in COVID-19 patients, and we suggest a path to therapy.


Asunto(s)
Infecciones por Coronavirus , Síndrome de Liberación de Citoquinas , Hipoxia , Pandemias , Neumonía Viral , Proteína S , Trombofilia/inmunología , Enzima Convertidora de Angiotensina 2 , Anticoagulantes/metabolismo , Anticoagulantes/farmacología , Betacoronavirus/fisiología , COVID-19 , Infecciones por Coronavirus/sangre , Infecciones por Coronavirus/inmunología , Infecciones por Coronavirus/terapia , Síndrome de Liberación de Citoquinas/sangre , Síndrome de Liberación de Citoquinas/virología , Manejo de la Enfermedad , Humanos , Hipoxia/sangre , Hipoxia/etiología , Hipoxia/inmunología , Interleucina-6/sangre , Peptidil-Dipeptidasa A/metabolismo , Neumonía Viral/sangre , Neumonía Viral/inmunología , Neumonía Viral/terapia , Proteína S/metabolismo , Proteína S/farmacología , SARS-CoV-2 , Índice de Severidad de la Enfermedad
15.
ACS Appl Bio Mater ; 3(11): 7810-7820, 2020 Nov 16.
Artículo en Inglés | MEDLINE | ID: mdl-35019521

RESUMEN

The Fe(III) complex [Fe(L)(NO3)(H2O)]+ (1) was prepared using a structurally characterized Schiff base ligand, 1-((pyren-1-ylimino) methyl) naphthalen-2-ol (HL), to develop an optical probe for fluorimetric recognition of DNA. An electrospray ionization-mass spectrometry (ESI-MS) study was carried out to ascertain the composition of 1 and the geometry of 1 was optimized by density functional theory (DFT) calculations. Compared to the strong intrinsic fluorescence of the ligand (HL), 1 was only weakly fluorescent. The interaction of 1 with DNA was investigated through different biophysical techniques. The fluorescence emission of 1 appeared to increase progressively in the presence of calf thymus (CT) DNA and this was utilized for the fluorimetric recognition of DNA. In comparison with 1, in the presence of DNA, the ligand HL showed quenching in its emission. The selectivity of 1 towards DNA was also confirmed in the presence of a large number of environmentally pertinent anions (NO3-, SO42-, Cl-, Br-, I-, OAC-, PO43-, ClO4-, HCO3-, H2PO4-, HPO42-, CO32-). Comprehensive DNA-binding experiments also showed that complex (1) and HL interacted with CT-DNA with different efficacies; the affinity of 1 was about six times higher than that of HL. Calorimetric studies showed that the 1-DNA association progressed with large positive entropy changes. In contrast, the association of HL with DNA was an enthalpy-driven process. Molecular docking results confirmed that the binding of 1 with CT-DNA progressed by intercalation and other noncovalent interactions.

17.
ACS Omega ; 3(7): 7494-7507, 2018 Jul 31.
Artículo en Inglés | MEDLINE | ID: mdl-30087915

RESUMEN

In this work, we report the interaction of a fluorescent ZnO-Au nanocomposite with deoxyribonucleic acid (DNA), leading to AT-specific DNA interaction, which is hitherto not known. For this study, three natural double-stranded (ds) DNAs having different AT:GC compositions were chosen and a ZnO-Au nanocomposite has been synthesized by anchoring a glutathione-protected gold nanocluster on the surface of egg-shell-membrane (ESM)-based ZnO nanoparticles. The ESM-based bare ZnO nanoparticles did not show any selective interaction toward DNA, whereas intrinsic fluorescence of the ZnO-Au nanocomposite shows an appreciable blue shift (Δλmax = 18 nm) in the luminescence wavelength of 520 nm in the presence of ds calf thymus (CT) DNA over other studied DNAs. In addition, the interaction of the nanocomposite through fluorescence studies with single-stranded (ss) CT DNA, synthetic polynucleotides, and nucleobases/nucleotides (adenine, thymine, deoxythymidine monophosphate, deoxyadenosine monophosphate) was also undertaken to delineate the specificity in interaction. A minor blue shift (Δλmax = 5 nm) in the emission wavelength at 520 nm was observed for single-stranded CT DNA, suggesting the proficiency of the nanocomposite for discriminating ss and ds CT DNA. More importantly, fluorescence signals from the nano-bio-interaction could be measured directly without any modification of the target, which is the foremost advantage emanated from this study compared with other previous reports. The AT base-pair-induced enhancement was also found to be highest for the melting temperature of CT DNA (ΔTmCT = 6.7 °C). Furthermore, spectropolarimetric experiments followed by calorimetric analysis provided evidence for specificity in AT-rich DNA interaction. This study would lead to establish the fluorescent ZnO-Au nanocomposite as a probe for nanomaterial-based DNA-binding study, featuring its specific interaction toward AT-rich DNA.

18.
J Photochem Photobiol B ; 178: 339-347, 2018 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-29178995

RESUMEN

Experimental evidences on the binding interaction of ZnO and Calf Thymus (CT) DNA using several biophysical techniques are the centre of interest of the present study. The interaction of ZnO with CT DNA has been investigated in detail by absorption spectral study, fluorescence titration, Raman analysis, zeta potential measurement, viscometric experiment along with thermal melting study and microscopic analysis. Steady-state fluorescence study revealed the quenching (48%) of the surface defect related peak intensity of ZnO on interaction with DNA. The optimized concentration of ZnO and DNA to obtain this level of quenching has been found to be 0.049mM and 1.027µM, respectively. Additional fluorescence study with 8-hydroxy-5-quinoline (HQ) as a fluorescence probe for Zn2+ ruled out the dissolution effect of ZnO under the experimental conditions. DNA conjugation on the surface of ZnO was also supported by Raman study. The quantitative variation in conductivity as well as electrophoretic mobility indicated significant interaction of ZnO with the DNA molecule. Circular dichroism (CD) and viscometry titrations provided clear evidence in support of the conformational retention of the DNA on interaction with ZnO. The binding interaction was found to be predominantly entropy driven in nature. The bio-physical studies presented in this paper exploring ZnO-CT DNA interaction could add a new horizon to understand the interaction between metal oxide and DNA.


Asunto(s)
ADN/química , Óxido de Zinc/química , Animales , Calorimetría , Bovinos , Dicroismo Circular , Ensayo de Cambio de Movilidad Electroforética , Microscopía Electrónica de Transmisión , Oxiquinolina/química , Espectrometría de Fluorescencia , Espectrometría Raman , Propiedades de Superficie , Termodinámica , Viscosidad
19.
ACS Biomater Sci Eng ; 4(2): 635-646, 2018 Feb 12.
Artículo en Inglés | MEDLINE | ID: mdl-33418752

RESUMEN

Cancer cells were locally damaged using targeted gold nanoparticles (GNP) conjugated with therapeutic dye thionine (TN). GNP was prepared by citrate reduction method, and the two complexes, namely GTN1 and GTN2, were synthesized by mixing GNP and TN at different ratios at room temperature and at 80 °C, respectively. It is expected that GTN1 is formed when stabilizer TN participates in the reduction of Au3+ ions to Au0 nanocrystallites, while GTN2 is synthesized when the cationic dye TN adsorbs onto the GNP surfaces due to the electrostatic attraction. The compounds were characterized by strong plasmon resonance absorption, Fourier transform infrared spectroscopy, dynamic light scattering technique, ζ-potential measurement, transmission electron microscopy, and atomic force microscopy. Crystallinity of the NPs was ascertained by X-ray diffraction. Strong binding of GTN1 to DNA and the structural perturbation prompted us to study the cytotoxic activity of the compounds on hepatocellular carcinoma cell lines (HepG2) by MTT assay. The mode of cytotoxicity was found due to reactive oxygen species (ROS) generation inside the cells. Fluorescence microscopy analysis revealed nuclear fragmentation which was caused due to the ROS. The GTN1 induced fragmentation led to the apoptosis mediated cell death as found from the cell cycle study. Conclusions drawn from these studies emphasized GTN1 to be capable of inhibiting proliferation in cancer cells in an amount greater than that of other compounds. The importance of the work lies in the exploration of effectiveness of nanoparticles to prevent cancer cell proliferation, which is a progressive step toward novel biomedical applications.

20.
Phys Med ; 45: 52-58, 2018 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-29472090

RESUMEN

PURPOSE: In this study non-calcified plaque composition is evaluated by Dual Energy CT (DECT). Energy Dispersive X-ray Spectroscopy (EDS) has been used to study the Plaque composition. An attempt has been made to explain the DECT results with EDS analysis. METHODS: Thirty-two ex-vivo human cadaver coronary artery samples were scanned by DECT and data was evaluated to calculate their effective atomic number and electron density (Zeff & ρe) by inversion method. Result of DECT was compared with pathology to assess their differentiating capability. The EDS study was used to explain DECT outcome. RESULTS: DECT study was able to differentiate vulnerable plaque from stable with 87% accuracy (area under the curve (AUC):0.85 [95% confidence interval {CI}:0.73-0.98}] and Kappa Coefficient (KC):0.75 with respect to pathology. EDS revealed significant compositional difference in vulnerable and stable plaque at p < .05. The weight percentage of higher atomic number elements like F, Na, Mg, S, Si, P, Cl, K and Ca was found to be slightly more in vulnerable plaques as compared to a stable plaque. EDS also revealed a significantly increased weight percentage of nitrogen in stable plaques. CONCLUSIONS: The EDS results were able to explain the outcomes of DECT study. This study conclusively explains the physics of DECT as a tool to assess the nature of non-calcified plaques as vulnerable and stable. The method proposed in this study allows for differentiation between vulnerable and stable plaque using DECT.


Asunto(s)
Enfermedad de la Arteria Coronaria/diagnóstico por imagen , Vasos Coronarios/diagnóstico por imagen , Placa Aterosclerótica/diagnóstico por imagen , Tomografía Computarizada por Rayos X , Adulto , Área Bajo la Curva , Enfermedad de la Arteria Coronaria/metabolismo , Enfermedad de la Arteria Coronaria/patología , Vasos Coronarios/metabolismo , Vasos Coronarios/ultraestructura , Femenino , Humanos , Masculino , Microscopía Electrónica de Rastreo , Persona de Mediana Edad , Placa Aterosclerótica/metabolismo , Placa Aterosclerótica/patología , Curva ROC , Análisis Espectral , Tomografía Computarizada por Rayos X/métodos , Adulto Joven
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