On the predictability of short-lived particulate matter around a cement plant in Kerman, Iran: machine learning analysis.

One of the greatest environmental risks in the cement industry is particulate matter emission (i.e., PM2.5 and PM10). This paper aims to develop descriptive-analytical solutions for increasing the accuracy of predicting particulate matter emissions using resample data of Kerman cement plant. Photometer instruments DUST TRAK and BS-EN-12341 method were used to determine concentration of PM2.5 and PM10. Sampling was performed on 4 environmental stations of Kerman cement plant in the four seasons. In order to accurate assessment of particulate matter concentration, a new model was proposed to resample cement plant time series data using Pandas in Python. The effect of meteorological parameters including wind speed, relative humidity, air temperature and rainfall on the particulate matter concentration was investigated through statistical analysis. The results indicated that the maximum annual average of 24-h of PM2.5 belonged to the east side (opposite the clinker depot) in 2019 (31.50 µg m-3) and west side (in front of the mine) in 2020 (31.00 µg m-3). Also, maximum annual average of 24-h of PM10 belonged to the west side (in front of the mine) in 2020 (121.00 µg m-3) and east side (opposite the clinker depot) in 2020 (120.75 µg m-3). The PM2.5 and PM10 concentrations are more than the allowable limit. The results demonstrate that particulate matter concentration increases with increasing relative humidity and rainfall. Finally, the SARIMA model was used to predict the particulate matter concentration. Supplementary Information: The online version contains supplementary material available at 10.1007/s13762-022-04645-3.

New insights into genetics underlying of plumage color.

Plumage color can be considered as a social signal in chickens and a breeding identification tool among breeders. The relationship between plumage color and trait groups of immunity, growth and fertility is still a controversial issue. This research aimed to determine the genome-wide additive and epistatic variants affecting plumage color variation in chickens using the chicken Illumina 60k high-density SNP array. Two scenarios of genome-wide additive association studies using all SNPs and independent SNPs were carried out. To perform epistatic association analysis, the LD pruning approach was used to reduce the complexity of the analysis. We detected seven novel significant loci using all of the SNPs in the model and 14 SNPs using the LD pruning approach associated with plumage color. Moreover, 89 significantly associated SNP-SNP interactions (P-value <10-6 ) distributed in 25 chromosomes were identified, indicating that all of the signals together putatively influence the quantitative variation of plumage color. By annotating genes relevant to top SNPs, we have distinguished 18 potential candidate genes comprising HNF4beta, CKMT1B, TBC1D22A, RPL8, CACNA2D1, FZD4, SGMS1, IRF8, OPTN, LOC420362, TRABD, OvoDA1, DAD1, USP6, RBM12B, MIR1772, MIR1709 and MIR6696 and also 89 putative gene-gene combinations responsible for plumage color variation in chickens. Furthermore, several KEGG pathways including metabolic pathway, cytokine-cytokine receptor interaction, focal adhesion, melanogenesis, glycosaminoglycan biosynthesis-keratan sulfate and sphingolipid metabolism were enriched in the gene-set analysis. The results indicated that plumage color is a highly polygenic trait which, in turn, can be affected by multiple coding genes, regulatory genes and gene-gene epistasis interactions. In addition to genes with additive effects, epistatic genes with tiny individual effect sizes but significant effects in a pair have the potential to control plumage coloration in chickens.

Effect of atmospheric cold plasma (ACP) on chlorine-adapted Salmonella enterica on spring onion.

One of the main drawbacks of chlorine disinfectants is the emergence of chlorine adapted (CA) or resistant microbial cells. This research aimed to investigate the effect of chlorine adaptation on resistance of Salmonella enterica upon atmospheric cold plasma (ACP) application at different voltages (6, 8 and 11 kV) and times (5, 10 and 15 min). Due to higher conversion efficiency and reduced dielectric barrier discharge power consumption, this method was used for cold plasma generation in this study. A higher lethality effect was observed from a higher voltage and longest times (11 kV-15 min) on CA S. enterica than on non-CA (P < 0·05). Still, it induced higher percentages of injured cells in CA (58·77%) than on non-CA (0·61%) (P < 0·05). The highest ACP effect on the inactivation of the indigenous natural flora of onion leaves was observed at the lowest voltage (P < 0·05). More than 3 log CFU/g reduction (P < 0·05) was observed at 6 kV after 5 and 10 min. ACP reduced CA and non-CA S. enterica cells on onion leaf surface to a lower extent than pure-treated cells in broth media. Nevertheless, similar to broth media, a high percentage of injury (61·03%) was induced on CA cells at higher voltage (11 kV-10 min) compared to non-CA (2·15%) (P < 0·05). Biofilm results revealed ACP application (6 kV-5 min) reduced average ODs in CA and non-CA cells (P < 0·05). Chlorine adaptation and ACP treatment influenced the antibiotic resistance pattern according to applied voltage, time and antibiotic type. The finding showed despite the highest lethality of high voltages and long times (11 kV-15 min), given the high percentages of injured cells, lower voltages may offer acceptable inactivation of pathogenic bacteria with lower injury induction. In conclusion, ACP has the potential ability to eliminate CA cells of S. enterica, which are predominant in fresh-cut vegetable outbreaks.

Genome-wide association study of shank length and diameter at different developmental stages in chicken F2 resource population.

In order to find SNPs and genes affecting shank traits, we performed a GWAS in a chicken F2 population of eight half-sib families from five hatches derived from reciprocal crosses between an Arian fast-growing line and an Urmia indigenous slow-growing chicken. A total of 308 birds were genotyped using a 60K chicken SNP chip. Shank traits including shank length and diameter were measured weekly from birth to 12 weeks of age. A generalized linear model and a compressed mixed linear model (CMLM) were applied to achieve the significant regions. The value of the average genomic inflation factor (λ statistic) of the CMLM model (0.99) indicated that the CMLM was more effective than the generalized linear model in controlling the population structure. The genes surrounding significant SNPs and their biological functions were identified from NCBI, Ensembl and UniProt databases. The results indicated that 12 SNPs at 12 different ages passed the LD-adjusted 5% Bonferroni significant threshold. Two SNPs were significant for shank length and nine SNPs were significant for shank diameter. The significant SNPs were located near to or inside 11 candidate genes. The results showed that a number of significant SNPs in the middle ages were higher than the rest. The MXRA8 gene was related to the significant SNP at week 1 that promotes proliferation of growth plate chondrocytes. A unique SNP of Gga_rs16689511 located on chicken Z chromosome within the LOC101747628 gene was related to shank length at three different ages of birds (weeks 8, 9 and 11). The significant SNPs for shank diameter were found at weeks 4 and 7 (four and five SNPs respectively). The identifications of SNPs and genes here could contribute to a better understanding of the genetic control of shank traits in chicken.

Electrocatalytic Oxidation of Ethanol on the Surface of Graphene Based Nanocomposites: An Introduction and Review to it in Recent Studies.

This review gives an overview of the electrochemical investigations about the properties of various types of graphene composites in the ethanol oxidation. Various routes to provide appropriate graphene-based materials required electrochemical techniques for investigation of different types of the materials as well as their performance and efficacy in ethanol oxidation are discussed in detail. Furthermore, it is demonstrated that the incorporation of suitable materials, e. g. noble metals (graphene-supported binary and ternary metal nanoparticles), metal oxides, conductive polymer, etc, with graphene results in excellent electrocatalytic activity, superb durability and selectivity in ethanol oxidation. Immobilization of electrocatalytically active NPs on graphene supports using physical approaches is considered as an effective route to prepare direct ethanol fuel cell (DEFC) anode catalysts.

Identification of candidate genes for blood metabolites in Iranian chickens using a genome-wide association study.

1. In order to identify loci associated with metabolic traits, a genome-wide association study was carried out in a chicken F2 population derived from a reciprocal cross between Iranian Urmia indigenous chickens and Arian broiler line using Illumina 60K Chicken single nucleotide polymorphism (SNP) BeadChip. 2. Six traits including plasma level of triglycerides (TGs), cholesterol (Chol), glucose (Glu), total protein, albumin (Alb) and globulin (Glo) were recorded. The association between the identified SNPs and metabolic traits was estimated by general linear model (GLM) and compressed mixed linear model (CMLM). 3. A total of 38 SNPs were identified at the genome-wide significant and suggestive levels, of which 5 SNPs reached a 5% Bonferroni genome-wide significance (P < 2.58E-6) for TG, Alb and Glo through CMLM, and 21 SNPs were significantly associated with TG, Chol, Glu, Alb and Glo through GLM. 4. Gene ontology showed that these SNPs were located within or near the candidate genes responsible for metabolic traits. 5. In conclusion, the identified candidate genes provided novel information for molecular mechanisms underlying metabolic traits. These findings are important in marker-assisted selection in the chicken breeding scheme.

Genome-wide association study of cell-mediated immune response in chicken.

Cell-mediated immunity (CMI) causes the intracellular destruction of the antigen or elimination of the host cell to make animals resistant against exogenous antigens and cancers. In this study, a genome-wide association study (GWAS) was carried out to identify genomic regions associated with CMI in chicken using chicken 60k high-density single nucleotide polymorphism (SNP) array. Genomic relationships were taken into account to adjust for population structure. In order to account for multiple testing, chromosome-wise false discovery rate was controlled at 5% and 10% levels. Moreover, a comparison of the power of fixed and mixed linear models based on genomic inflation factor was carried out. Mixed linear model (MLM) had better inflation rate, and therefore the results from MLM were used for subsequent analysis. Three significantly associated SNPs (FDR < 0.05) on chromosome 24 and linkage group E22C19W28_E50C23, and three suggestively associated SNPs (FDR < 0.1) on chromosome 1, 5 and 16 were identified. Pathway analysis showed that two biological pathways, which are related to immune response, were strongly associated with the candidate genes surrounding identified SNPs, and their influences were mostly on antigen processing and presentation, and cellular structure.

Decomposing genomic variance using information from GWA, GWE and eQTL analysis.

A commonly used procedure in genome-wide association (GWA), genome-wide expression (GWE) and expression quantitative trait locus (eQTL) analyses is based on a bottom-up experimental approach that attempts to individually associate molecular variants with complex traits. Top-down modeling of the entire set of genomic data and partitioning of the overall variance into subcomponents may provide further insight into the genetic basis of complex traits. To test this approach, we performed a whole-genome variance components analysis and partitioned the genomic variance using information from GWA, GWE and eQTL analyses of growth-related traits in a mouse F2 population. We characterized the mouse trait genetic architecture by ordering single nucleotide polymorphisms (SNPs) based on their P-values and studying the areas under the curve (AUCs). The observed traits were found to have a genomic variance profile that differed significantly from that expected of a trait under an infinitesimal model. This situation was particularly true for both body weight and body fat, for which the AUCs were much higher compared with that of glucose. In addition, SNPs with a high degree of trait-specific regulatory potential (SNPs associated with subset of transcripts that significantly associated with a specific trait) explained a larger proportion of the genomic variance than did SNPs with high overall regulatory potential (SNPs associated with transcripts using traditional eQTL analysis). We introduced AUC measures of genomic variance profiles that can be used to quantify relative importance of SNPs as well as degree of deviation of a trait's inheritance from an infinitesimal model. The shape of the curve aids global understanding of traits: The steeper the left-hand side of the curve, the fewer the number of SNPs controlling most of the phenotypic variance.

Comparison of the therapeutic effects of narrow band UVB vs. PUVA in patients with pityriasis lichenoides.

BACKGROUND AND AIMS: Pityriasis lichenoides (PL) is a self-limiting papulosquamous skin disorder with chronic course. Best therapeutic options are yet to be defined. Phototherapy is one of the most prevalent treatments and the aim of this study was to compare the therapeutic effects of the two main phototherapy options: psoralen plus ultraviolet A (PUVA) and narrow band UVB (NB-UVB). MATERIAL AND METHODS: Patients with PLC based on clinical findings and pathology, involving at least 60% of total body surface, were enrolled if they were not pregnant, lactating women and had not contraindication for phototherapy. Based on simple randomization, they received either PUVA or NB-UVB, and patients' responses were recorded. RESULTS: A total of 15 patients including eight males (53%) and seven females (47%) were enrolled in the study and were randomized into groups A and B, each including four patients. In group A, seven patients had complete response (87.5%) and one patient had partial response (12.5%). Among patients in group B, five patients had complete response (71.4%) and two patients (28.6%) had partial response (P > 0.05). CONCLUSION: As the difference between the two groups is insignificant, it seems that both options are acceptable for treating this disorder.

Treatment of trichostasis spinulosa with a 755-nm long-pulsed alexandrite laser.

BACKGROUND: Trichostasis spinulosa (TS) is a common disorder of hair follicle, characterized by spinous plugs. Topical treatments offer temporary relief but permanent removal of the abnormal follicles using hair removal lasers may result in a definite cure. OBJECTIVE: To evaluate the safety and efficacy of 755-nm alexandrite laser for the treatment of TS lesions. PATIENTS AND METHODS: Two consecutive 755-nm alexandrite laser treatments were performed one month apart. The clinical response and adverse effects were assessed four weeks after the first and second treatments and 20 weeks after the second treatment. RESULTS: Thirty one patients with skin phototypes II to IV completed the study. At the last follow up visit, a decrease in dark-plug density of greater than 50% was noted in 16 patients (51.3%), while only three patients (9.7%) had an improvement of greater than 75%. Ten of the 21 patients (47.6%) with skin type III and six of the seven patients (85.7%) with skin type IV achieved at least 50% improvement in lesions at the last follow up visit (P = 0.1). CONCLUSION: The 755-nm alexandrite laser can safely and effectively reduce TS lesions lasting for a relatively long time in patients with skin types III-IV.

Identification of Malassezia species isolated from Iranian seborrhoeic dermatitis patients.

BACKGROUND AND OBJECTIVES: In recent years, the genus Malassezia has come to be considered important in the etiology of seborrhoeic dermatitis (SED). The aim of present study was identification of Malassezia species on the lesions of Iranian SED patients. METHODS: 100 patients with SED were enrolled in the study. The patients were evaluated both clinically for the severity of SED and microscopically for the presence of the yeast Malassezia. Diagnosis of Malassezia was made after the yeast Malassezia was microscopically observed on skin scales stained with methylene blue. All samples were also cultivated on Leeming and Notman and Sabouraud's dextrose agar culture media. The agar plates were incubated at 32 degrees C for 2 weeks and evaluated for the existence of growth every day for one week. Identification of isolated yeast was based on morphological and physiological characteristics. RESULTS: From 100 patients with SED, 60% were female. The age range was 12-65 years with median 27.3 years. The highest prevalence of SED was seen in 20-29 years age group. 59% and 41% of patients had local and generalized lesions, respectively. 58% of patients showed lesion on scalp. Microscopic examination of skin scales was positive in 100% of SED lesions. 96% of patients showed more than 1-3 yeasts in each microscopic field whereas only 4% patients showed 1-3 yeasts in whole slide. Totally, 77% of the specimens yielded Malassezia in culture. Malassezia globosa was the most commonly isolated Malassezia species (55.8%). Malassezia globosa had also most frequencies on scalp and face lesions. Malassezia furfur had most frequency on trunk lesions. CONCLUSION: The results of our study showed high recovery rate of Malassezia species on lesions of patients with SED. So it might be playing a causative role in the etiology of this disease.

Psycho-cutaneous disorders: an epidemiologic study.

BACKGROUND AND AIMS: Psycho-dermatology addresses the interaction between mind and the skin. Effective management of at least one third of the patients attending the skin department depends, to some extent, upon the recognition of emotional and psychologic factors. The aim of this study was to provide epidemiologic data about common psycho-dermatoses and their prevalence in dermatologic patients in Iran. MATERIALS AND METHODS: Patients suspicious to have psychocutaneous problem with primary dermatologic chief complaint were included. After detailed dermatologic evaluation, all patients were visited by an expert psychologist to determine prevalence of DSM-IV disorders in each psychocutaneous category including delusion of parasitosis, trichotillomania, dermatitis artefacta and neurotic excoriation. RESULTS: A total of 178 patients including 78 (43.8%) males and 100 (56.2%) females entered the study. The commonest psychocutaneous disorder was neurotic excoriation followed by trichotillomania, delusion of parasitosis and dermatitis artefacta. Mood disorder was the commonest DSM-IV disorder in our patients, then anxiety disorder and drug-induced symptoms. CONCLUSION: According to our results, it seems that all psychocutaneous disorders but delusion of parasitosis are commoner in females. Mood and anxiety disorders were common in patients with dermatitis artefacta, as patients with neurotic excoriation. In trichotillomania, obsessive compulsive disorder was the commonest disorder. Drug abuse is a major background of delusional parasitosis.

Biophysical characteristics of skin in diabetes: a controlled study.

BACKGROUND: Cutaneous complications are common in diabetes. Previous assays suggest that hyperglycemia and decreased insulin signal are involved in the impairment of skin function. The aim of this study was to evaluate the biophysical characteristics of skin in patients with diabetes mellitus and compares them with healthy non-diabetic controls. OBJECTIVE: To measure biophysical characteristic of skin including transepidermal water loss (TEWL), water content, sebum and skin elasticity in patients with diabetes mellitus and compare them with healthy non-diabetic controls. METHODS: This case-control study was conducted on 38 patients with diabetes and 40 age- and sex-matched healthy people. The biophysical properties of skin including stratum corneum (SC) hydration, sebum content, TEWL and skin elasticity were measured and compared between the two groups at three different locations of the body. RESULTS: The measurement of SC hydration and TEWL showed no significant difference between diabetics and controls. The skin surface lipids on the forehead but not other sites were significantly lower in the diabetics than in the controls. Acoustic wave propagation speed, a measurement related to skin elasticity, was significantly lower in forearm and forehead of diabetics. CONCLUSION: Diabetes affects some functional properties of epidermis and dermis that may responsible for many cutaneous manifestations of diabetes. These results suggest that patients with diabetes mellitus tend to show a normal hydration state of the SC together with decreased sebaceous gland activity and impaired skin elasticity, without any impairment of the SC barrier function.

Genomic loci associated with antibody-mediated immune responses in an F2 chicken population.

Immunity-related traits are heritable in chicken, therefore, it is possible to improve the inherent immunity by breeding programs. In this study using the Illumina chicken 60K single nucleotide polymorphisms (SNPs) chip, we performed a set of genome-wide association studies to determine candidate genes and loci responsible for primary and secondary antibody-mediated responses against sheep red blood cell. A F2 population descended from a commercial meat-type breed and an Iranian indigenous chicken was used for this study. Statistical analysis was based on a mixed linear model utilizing genomic relationship matrix to prevent spurious associations. Correction for multiple testing was done by applying 5% and 10% chromosomal false discovery rates (FDRs) for significant and suggestive thresholds, respectively. Nine significant and 17 suggestive associated SNPs were identified. Most of the SNPs that were suggestively associated with the primary response of total plasma immunoglobulins were also significantly associated with this trait in secondary response. Three SNPs were located within a narrow region of 23 kb on chromosome 16. Pathway analysis for the genes surrounding the associated SNPs showed that they are involve in antigen processing and presentation, primary immunodeficiency, vitamin digestion and absorption, cell adhesion molecules, phagosome, influenza A, folding, assembly and peptide loading of class I major histocompatibility complex, lipid digestion, mobilization, and transport (FDR < 0.1). Interestingly, there were common regains associated with multiple immune-related traits.

Antibacterial activity and sensory properties of Heracleum persicum essential oil, nisin, and Lactobacillus acidophilus against Listeria monocytogenes in cheese.

AIM: The aim of this study was to evaluate the antibacterial and chemical effect of Heracleum persicum essential oil (EO), nisin, Lactobacillus acidophilus, and their combination against Listeria monocytogenes both in vitro and in Iranian white cheese model. MATERIALS AND METHODS: Chemical compositions of H. persicum EO were analyzed by gas chromatography-mass spectrometry. After production of Iranian white cheese, minimum inhibitory concentration (MIC) and minimum bactericidal concentration of EO and nisin and agar spot test of L. acidophilus against L. monocytogenes were evaluated. RESULTS: Hexyl butanoate (25.98%), octyl isobutyrate (17.82%), methyl butyrate (14.37%), and pentyl cyclopropane (12.77%) were the main components of the EO. MIC of the EO against L. monocytogenes was 2.5 mg/mL. Combination of nisin (5.3 IU/mL) and H. persicum EO (2500 µg/mL) showed increasing effect against L. monocytogenes (fractional inhibitory concentration = 0.9), while a higher concentration of EO and nisin showed undesirable effect on the cheese flavor. Furthermore, a combination of 1012 CFU/g L. acidophilus with H. persicum EO at the concentration of 2.5 mg/mL (T12) showed acceptable sensorial and also antibacterial results in Iranian white cheese. CONCLUSION: Combination of H. persicum EO, L. acidophilus, and nisin can be recommended as natural preservatives and flavoring agents in cheese.

Serum constituents analyses in dairy cows: effects of duration and temperature of the storage of clotted blood.

We studied the effects of storage time and temperature of clotted whole blood on the amounts of 17 analytes in bovine blood serum. Serum separated after blood was allowed to stand for 2, 4, 6, 12 and 24h at room temperature or on ice. Results obtained for phosphorous, magnesium, urea, cholesterol, beta-hydroxybutyrate (BHBA), triglyceride, albumin, total protein and gamma-glutamyletransferase (GGT) were not influenced by storage at room temperature or on ice for as long as 24h. Duration of the clotted whole blood storage had a significant effect on calcium, glucose concentrations, creatine kinase (CK) and aspartate aminotransferase (AST) activities and temperature had a significant effect on glucose, non-esterified fatty acids, CK and bilirubin concentrations.

P-type conductive polymer/zeolitic imidazolate framework-67 (ZIF-67) nanocomposite film: Synthesis, characterization, and electrochemical performance as efficient electrode materials in pseudocapacitors.

In the present work, zeolitic imidazolate framework (ZIF-67) was synthesized via chemical routes. For improving the electrochemical performance of the conductive polymer, POAP/ /ZIF-67 composite films were fabricated by POAP electropolymerization in the presence of ZIF-67 as active electrodes for electrochemical supercapacitors. The structural and the valance states of the prepared samples were characterized by X-ray diffraction (XRD) and field emission scanning electron microscopy (FESEM). Different electrochemical methods, including galvanostatic charge discharge experiments, cyclic voltammetry, and electrochemical impedance spectroscopy, have been applied to study the system performance. The supercapacitive behavior of the composite film was attributed to the (i) high active surface area of the composite, the (ii) charge transfer along the polymer chain due to the conjugation form of the polymer, and finally, the (iii) synergism effect between the conductive polymer and ZIF-67.

Enhancement of pseudocapacitance performance of p-type conductive polymer in the presence of newly synthesized graphene oxide-hexamethylene tributylammonium iodide nanosheets.

In present work, GO-hexamethylene tributylammonium iodide (GO-HMA-TBAI) was synthesized via chemical routes. The structural and valance state of the prepared samples was characterized by X-ray diffraction, X-ray photoelectron spectroscopy. For improving the electrochemical performance of conductive polymer, poly ortho aminophenol (POAP)/ GO-HMA-TBAI composite films have been fabricated by POAP electropolymerization in the presence of GO-HMA-TBAI as active electrodes for electrochemical supercapacitors. Different electrochemical methods including galvanostatic charge discharge experiments, cyclic voltammetry and electrochemical impedance spectroscopy have been applied to study the system performance. The supercapacity behavior of the composite film was attributed to the high active surface area, high conductivity of the composite film and synergism effect between conductive polymer and GO-HMA-TBAI.

Probiotic white cheese production using coculture with Lactobacillus species isolated from traditional cheeses.

AIM: The aim of the present study was to investigate the viability of lactic acid bacteria isolated from traditional cheeses and cocultured in Iranian white cheese during ripening. MATERIALS AND METHODS: A total of 24 samples were isolated from 8 types of traditional cheeses in West Azerbaijan, Iran. Isolated species were cocultured with starter bacteria during the production of Iranian white cheese, and their viability was investigated up to 60 days of the refrigerated storage. RESULTS: Of 118 isolates of Lactobacillus, 73 isolates (62%) were confirmed as facultative heterofermentative and 45 isolates (38%) as obligate homofermentative. Of the facultative heterofermentatives, 28 isolates (24%) were Lactobacillus plantarum, 24 isolates (20%) were Lactobacillus casei, and 21 isolates (18%) were Lactobacillus agilis. Obligate homofermentatives were Lactobacillus delbrueckii (21%), Lactobacillus helveticus (14%), and Lactobacillus salivarius (3%). L. plantarum, L. casei and L. helveticus were found in high enough levels(106 CFU/g). CONCLUSION: According to the obtained data, it is recommended that complex starters such as L. helveticus, L. plantarum, and L. casei can be used in industrial productions of cheese to obtain exclusive properties of traditional cheeses.