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1.
Cytokine ; 167: 156213, 2023 07.
Artículo en Inglés | MEDLINE | ID: mdl-37121091

RESUMEN

BACKGROUND: Anti-aging protein Klotho has been reported to be associated with atherosclerosis, which was considered as a chronic inflammatory disease. However, the relationship between Klotho and senile inflammation remained unclear. The present study aims to ascertain the correlation of Klotho with inflammation in middle-aged and elderly coronary atherosclerotic disease (CAD). METHODS: A total of 302 patients with CAD were included in this study. Coronary atherosclerosis was confirmed and quantified for all patients by coronary angiography. Serum Klotho was detected by enzyme linked immunosorbent assay. Serum concentrations of IL-6 and IL-8 were quantified by chemiluminescence assay. T-lymphocyte subsets were measured using flow cytometry. RESULTS: Multivariate linear regression analysis showed that serum Klotho was an independent predictor for circulating monocytes (standard ß = -0.321, P < 0.001) and CD4+/CD8+ ratio (standard ß = -0.522, P < 0.001). After adjustment, serum Klotho was still independently associated with IL-6 (standard ß = -0.395, P < 0.001) and IL-8 (standard ß = -0.296, P < 0.001). Moreover, circulating monocytes, CD4+ and CD8+ lymphocytes were correlated with increased serum concentrations of IL-6 and IL-8, independent of CRP (P < 0.05). In receiver operating characteristic curve analysis, CD4+/CD8+ ratio (AUC = 0.863, P < 0.001), IL-6 (AUC = 0.893, P < 0.001) and IL-8 (AUC = 0.884, P < 0.001) presented the excellent predictive performance for significant CAD. CONCLUSIONS: Decreased concentrations in serum Klotho reflect senile inflammation, which is related to the severity of CAD in middle-aged and elderly patients.


Asunto(s)
Aterosclerosis , Enfermedad de la Arteria Coronaria , Anciano , Humanos , Persona de Mediana Edad , Envejecimiento , Angiografía Coronaria , Inflamación , Interleucina-6 , Interleucina-8
2.
Eur Radiol ; 33(12): 9444-9454, 2023 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-37480548

RESUMEN

OBJECTIVE: To evaluate iodixanol-associated acute kidney injury (AKI) and prognosis in patients undergoing elective percutaneous coronary intervention (PCI). METHODS: Patients undergoing elective PCI and iodixanol administration were prospectively enrolled in 8 centers between May 2020 and November 2021. The primary endpoint was AKI, defined as an increase in SCr of ≥ 0.3 mg/dL (26.4 µmol/L) or relative elevation ≥ 50% from baseline in the 48-72 h after PCI. Prognosis evaluations included the major adverse renal and cardiovascular events (MARCE): all-cause mortality, new-onset renal replacement therapy (NRRT), non-fatal myocardial infarction, and non-fatal stroke. AKI predictors were identified using multivariable logistic regression and associations between AKI and outcomes were examined using Cox regression. RESULTS: A total of 3630 patients were included in the final analysis and 2.9% of patients (107/3,630) suffered AKI. Among them, 95.3% (102/107) of AKI were stage 1, and 4.6% (5/107) of stage 2. The multivariable analysis indicated that age over 75-year-old, diabetes, NT-pro-BNP > 300 pg/mL, hemoglobin < 110 g/L, eGFR < 60 mL/min/1.73m2, and diuretics were independently associated with AKI (p < 0.05). After a median follow-up of 13 months, MARCE occurred in 3.6% (131/3630) of the study population, and their incidence was higher in AKI (9.4%, 10/107) vs. non-AKI patients (3.4%, 121/3,523). However, after multivariable adjustment, there was no statistically significant association between AKI and MARCE (p = 0.382). CONCLUSIONS: In patients undergoing elective PCI, cases of iodixanol-associated AKI were mostly mild and, after multivariable adjustment, held no statistically significant association with MARCE on mid-term follow-up. CLINICAL RELEVANCE STATEMENT: The incidence of iodixanol-associated AKI was low and mainly limited to mild renal impairment in patients undergoing elective PCI. Physicians should provide adequate contrast for coronary artery evaluation and, at the same time, minimize the contrast volume. KEY POINTS: • The incidence of iodixanol-associated acute kidney injury was low and mostly limited to mild renal impairment. • Iodixanol administration had no statistically significant impact on the major adverse renal and cardiovascular events in patients undergoing elective percutaneous coronary intervention.


Asunto(s)
Lesión Renal Aguda , Infarto del Miocardio , Intervención Coronaria Percutánea , Humanos , Anciano , Intervención Coronaria Percutánea/efectos adversos , Medios de Contraste/efectos adversos , Estudios Prospectivos , Lesión Renal Aguda/inducido químicamente , Lesión Renal Aguda/epidemiología , Pronóstico , Infarto del Miocardio/etiología , Factores de Riesgo
3.
BMC Anesthesiol ; 23(1): 237, 2023 07 13.
Artículo en Inglés | MEDLINE | ID: mdl-37442959

RESUMEN

AIM: To investigate the effects of penehyclidine hydrochloride combined with dexmedetomidine on pulmonary function in patients undergoing heart valve surgery with cardiopulmonary bypass (CPB). METHODS: A total of 180 patients undergoing elective heart valve surgery with CPB were randomly divided into four groups: 45 in group P (intravenous penehyclidine hydrochloride 0.02 mg/kg 10 min before anesthesia induction and at the beginning of CPB, total 0.04 mg/kg); 43 in group D (dexmedetomidine 0.5 µg/kg/h after induction of anesthesia until the end of anesthesia); 44 in group PD ( penehyclidine hydrochloride 0.04 mg/kg combined with dexmedetomidine 0.5 µg/kg/h intravenously during anesthesia); and 43 in group C (same amount of normal saline 10 min before and after anesthesia induction, to the end of anesthesia, and at the beginning of CPB). The main outcomes were the incidence and severity of postoperative pulmonary complications (PPCs). The secondary outcomes were: (1) extubation time, length of stay in intensive care, and postoperative hospital stay, and adverse events; and (2) pulmonary function evaluation indices (oxygenation index and respiratory index) and plasma inflammatory factor concentrations (tumor necrosis factor-α, interleukin-6, C-reactive protein and procalcitonin) during the perioperative period. RESULTS: The incidence of PPCs in groups P, D and PD after CPB was lower than that in group C (P < 0.05), and the incidence in group PD was significantly lower than that in groups P and D (P < 0.05). The scores for PPCs in groups P, D and PD were lower than those in group C (P < 0.05). CONCLUSION: Combined use of penehyclidine hydrochloride and dexmedetomidine during anesthesia reduced the occurrence of postoperative pulmonary dysfunction, and improved the prognosis of patients undergoing heart valve surgery with CPB. TRIAL REGISTRATION: The trial was registered in the Chinese Clinical Trial Registry on 3/11/2020 (Registration No.: ChiCTR2000039610).


Asunto(s)
Dexmedetomidina , Humanos , Quinuclidinas/uso terapéutico , Método Doble Ciego , Válvulas Cardíacas
4.
Cardiovasc Drugs Ther ; 36(5): 859-866, 2022 10.
Artículo en Inglés | MEDLINE | ID: mdl-34241730

RESUMEN

PURPOSE: To compare the effects of paclitaxal-coated balloon (PCB) versus conventional balloon (CB) on side branch (SB) lesion and cardiovascular outcomes in patients with de novo true bifurcation lesions. METHODS: In total, 219 patients with de novo true bifurcation lesions were enrolled and divided into PCB group (102 cases) and CB group (117 cases) according to angioplasty strategy in SB. Drug-eluting stent (DES) was implanted in main vessel (MV) for each subject. All subjects underwent a 12-month follow-up for late lumen loss (LLL), restenosis, and major adverse cardiovascular events (MACE) after percutaneous coronary intervention (PCI). MACEs included cardiac death, nonfatal myocardial infarction, and unstable angina requiring admission. RESULTS: There were no differences in diameter, minimum lumen diameter (MLD), and stenosis for bifurcation lesions between the two groups before and immediately after PCI (P > 0.05). After 12-month follow-up, no differences occurred in MV-MLD and MV-LLL between the two groups (P > 0.05); SB-MLD in PCB group was higher than that in CB group (1.97 ± 0.36 mm vs. 1.80 ± 0.43 mm, P = 0.007); SB-LLL in PCB group was lower than that in CB group (0.11 ± 0.18 mm vs. 0.19 ± 0.25 mm, P = 0.024). Multivariate COX analyses indicated that PCB group had lower MACE risk than CB group (HR = 0.480, 95%CI 0.244-0.941, P = 0.033). CONCLUSION: PCB could decrease SB-LLL and MACE risk in patients with de novo true coronary bifurcation lesion 12 months after single-DES intervention.


Asunto(s)
Angioplastia Coronaria con Balón , Enfermedad de la Arteria Coronaria , Reestenosis Coronaria , Stents Liberadores de Fármacos , Intervención Coronaria Percutánea , Angioplastia Coronaria con Balón/efectos adversos , Angiografía Coronaria , Enfermedad de la Arteria Coronaria/diagnóstico por imagen , Enfermedad de la Arteria Coronaria/etiología , Enfermedad de la Arteria Coronaria/terapia , Reestenosis Coronaria/diagnóstico por imagen , Reestenosis Coronaria/etiología , Humanos , Paclitaxel/efectos adversos , Intervención Coronaria Percutánea/efectos adversos , Resultado del Tratamiento
5.
Bioorg Chem ; 123: 105795, 2022 06.
Artículo en Inglés | MEDLINE | ID: mdl-35430417

RESUMEN

The concept of subtype selectivity and functional bias has recently reshaped current GPCR drug discovery for G protein-coupled receptors. A series of new N-H aporphines with A-ring modifications have been synthesized, and their efficacy on 5-HT2 receptor activation was evaluated. SAR analysis led to the discovery of several more potent and selective 5-HT2C receptor agonists (e.g., 11b and 11f) with low nanomolar activity. Molecular docking analysis of this series of aporphines was in accordance with our SAR results. The functional selectivity of specific compounds was tested via both Gq-mediated calcium flux and ß-arrestin recruitment assays, which revealed that these compounds exhibited no ß-arrestin recruitment activity. Further ADMET study combined with behavioral assessment using a methamphetamine-induced hyperactivity model identified compound 11b and 11f possessing promising drug-like profiles and having antipsychotic potential. These agonists with an exclusive bias toward Gq signaling may serve as valuable pharmacological probes to facilitate the elucidation of therapeutically relevant 5-HT2C signaling pathways and the development of alternative antipsychotic medications.


Asunto(s)
Antipsicóticos , Aporfinas , Antipsicóticos/química , Antipsicóticos/farmacología , Aporfinas/farmacología , Simulación del Acoplamiento Molecular , Receptor de Serotonina 5-HT2C , Serotonina
6.
Appl Opt ; 61(28): 8382-8388, 2022 Oct 01.
Artículo en Inglés | MEDLINE | ID: mdl-36256152

RESUMEN

To settle the terahertz (THz) image degradation problem, we propose an effective enhancement method based on the physical model and multiscale retinex (MSR) algorithm. The overall enhancing process involves two parts: reconstruction and enhancement. First, the original THz images are reconstructed by a mathematical model, which is built and considered the THz absorption variate and Gaussian distribution of the beam. Then, the original images are processed by the proposed algorithm, which combines the atmospheric scattering model and optimized MSR algorithm. The proposed algorithm not only recovers the image scene radiance and removes haze, but also can make a compromise of the dynamic range of gray scale and edge enhancement of the image. Results on a variety of THz images demonstrate our method can effectively improve the quality of THz images and retain sufficient image details.

7.
Physiol Plant ; 172(2): 885-895, 2021 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-33063343

RESUMEN

The WRKY transcription factors (TFs) play multifaceted roles in plant growth, development, and stress response. Previously, we found that SlWRKY81 negatively regulates tomato tolerance to drought; however, the mechanisms of stomatal regulation in response to drought remain largely unclear. Here, we showed that drought-induced upregulation in the SlWRKY81 transcripts induced photoinhibition and reduced the net photosynthetic rate in tomato leaves. However, silencing SlWRKY81 alleviated those inhibitions and minimized the drought-induced damage. A time-course of water loss showed that SlWRKY81 silencing significantly and consistently reduced leaf water loss, suggesting a role for SlWRKY81 in stomatal movement. Further analysis using light microscopy revealed that SlWRKY81 silencing significantly decreased stomatal aperture and increased the ratio of length to width of stomata under drought. Both biochemical assay and confocal laser scanning microscopy demonstrated that drought-induced upregulation in SlWRKY81 expression inhibited the nitric oxide (NO) accumulation in the guard cells, which was attributed to the simultaneous declines in the activity of nitrate reductase (NR) and NR expression in tomato leaves. The inspection of 3-kb sequences upstream of the predicted transcriptional start site of the NR identified three copies of the core W-box (TTGACC/T) sequence in the promoter region, indicating possible targets of SlWRKY81. Taken together, these data suggest that SlWRKY81 potentially represses NR transcription and thus reduces NO accumulation to attenuate stomatal closure and subsequent drought tolerance. These findings provide an improved understanding of the mechanism of WRKY-induced regulation of stomatal closure, which can be exploited in the future to enhance drought tolerance in crops.


Asunto(s)
Sequías , Óxido Nítrico/metabolismo , Estomas de Plantas/fisiología , Solanum lycopersicum , Factores de Transcripción/metabolismo , Regulación de la Expresión Génica de las Plantas , Solanum lycopersicum/genética , Solanum lycopersicum/metabolismo , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Estrés Fisiológico , Factores de Transcripción/genética
8.
Zhonghua Nan Ke Xue ; 27(5): 433-436, 2021 May.
Artículo en Zh | MEDLINE | ID: mdl-34914319

RESUMEN

OBJECTIVE: To evaluate the effect of the York-Mason procedure (posterior sagittal approach) in the treatment of urethrorectal fistula. METHODS: Ten 15-80 (mean 54) years old male patients with urethrorectal fistula were treated by the York-Mason procedure, 3 by anoplasty for congenital anal atresia, 5 by laparoscopic radical prostatectomy, and the other 2 by radical rectal cancer resection. All the cases were single fistula with a history of 3 months to 18 years. Enterostomy was performed in 6 of the cases before the York-Mason procedure. RESULTS: The York-Mason procedure lasted 90-130 (mean 104) minutes, with no perioperative complications. Nine of the cases were successfully repaired in the first surgery and 1 in the second. The patients were discharged after an average of 7 hospital days postoperatively and followed up for 6-90 months without recurrence. CONCLUSIONS: The York-Mason procedure is a reliable and effective option for the treatment of urethrorectal fistula, with the advantages low morbidity, short operation time and fast recovery.


Asunto(s)
Fístula Rectal , Fístula Urinaria , Humanos , Masculino , Persona de Mediana Edad , Tempo Operativo , Prostatectomía , Fístula Rectal/cirugía , Fístula Urinaria/cirugía
9.
Nat Methods ; 14(10): 979-982, 2017 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-28825705

RESUMEN

Single-cell trajectories can unveil how gene regulation governs cell fate decisions. However, learning the structure of complex trajectories with multiple branches remains a challenging computational problem. We present Monocle 2, an algorithm that uses reversed graph embedding to describe multiple fate decisions in a fully unsupervised manner. We applied Monocle 2 to two studies of blood development and found that mutations in the genes encoding key lineage transcription factors divert cells to alternative fates.


Asunto(s)
Algoritmos , Diferenciación Celular/fisiología , Simulación por Computador , Regulación del Desarrollo de la Expresión Génica/fisiología , Modelos Biológicos , Animales , Mutación , Factores de Transcripción/genética , Factores de Transcripción/metabolismo , Transcriptoma/fisiología
10.
Bioinformatics ; 35(3): 380-388, 2019 02 01.
Artículo en Inglés | MEDLINE | ID: mdl-30010718

RESUMEN

Motivation: The rapid development of sequencing technology has led to an explosive accumulation of genomic data. Clustering is often the first step to be performed in sequence analysis. However, existing methods scale poorly with respect to the unprecedented growth of input data size. As high-performance computing systems are becoming widely accessible, it is highly desired that a clustering method can easily scale to handle large-scale sequence datasets by leveraging the power of parallel computing. Results: In this paper, we introduce SLAD (Separation via Landmark-based Active Divisive clustering), a generic computational framework that can be used to parallelize various de novo operational taxonomic unit (OTU) picking methods and comes with theoretical guarantees on both accuracy and efficiency. The proposed framework was implemented on Apache Spark, which allows for easy and efficient utilization of parallel computing resources. Experiments performed on various datasets demonstrated that SLAD can significantly speed up a number of popular de novo OTU picking methods and meanwhile maintains the same level of accuracy. In particular, the experiment on the Earth Microbiome Project dataset (∼2.2B reads, 437 GB) demonstrated the excellent scalability of the proposed method. Availability and implementation: Open-source software for the proposed method is freely available at https://www.acsu.buffalo.edu/~yijunsun/lab/SLAD.html. Supplementary information: Supplementary data are available at Bioinformatics online.


Asunto(s)
Algoritmos , Análisis por Conglomerados , Microbiota , Programas Informáticos , Biología Computacional
11.
Opt Express ; 28(17): 25293-25307, 2020 Aug 17.
Artículo en Inglés | MEDLINE | ID: mdl-32907053

RESUMEN

High-quality terahertz (THz) images are vital to integrated circuit (IC) manufacturing. Due to the unique sensitivity of THz waves to different materials, the images obtained from the point-spread function (PSF) model have fewer image details and less texture information in some frequency bands. This paper presents an image fusion technique to enhance the resolution of THz IC images. The source images obtained from the PSF model are processed by a fusion method combining a multiscale transform (MST) and sparse representation (SR). The low-pass band is handled by sparse representation, and the high-pass band is fused by the conventional "max-absolute" rule. From both objective and visual perspectives, four popular multiscale transforms-the Laplacian pyramid, the ratio of low-pass pyramids, the dual-tree complex wavelet transform and the curvelet transform-are thoroughly compared at different decomposition levels ranging from one to four. This work demonstrates the feasibility of using image fusion to enhance the resolution of THz IC images.

12.
Opt Express ; 28(4): 5000-5012, 2020 Feb 17.
Artículo en Inglés | MEDLINE | ID: mdl-32121729

RESUMEN

Detection of integrated circuit (IC) defects is vital in IC manufacturing. Traditional defect detection methods have relied on scanning electron microscopy and X-ray imaging techniques that are time consuming and destructive. Hence, in this paper we considered terahertz imaging as a label-free and nondestructive alternative. This study aimed to use a convolutional neural network model (CNN) to improve the performance of the terahertz imaging IC detection system. First, we constructed a terahertz imaging IC dataset and analyzed it. Subsequently, a new CNN structure was proposed based on the VGG16 network. Finally, it was optimized based on its structure and dropout rate. The method proposed above can improve IC defects detection accuracy of THz imaging. Most significantly, this work will promote the application of terahertz imaging in practice and provide a foundation to further research in relevant fields.

13.
J Surg Oncol ; 122(2): 226-233, 2020 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-32436255

RESUMEN

BACKGROUND AND OBJECTIVES: Recently, PINPOINT, a novel laparoscopic fusion indocyanine green fluorescence imaging (IGFI) system has become available for laparoscopic liver resection. This study aims to characterize fluorescence patterns of intrahepatic cholangiocarcinoma (ICC) using the negative counterstaining method in laparoscopic anatomical hepatectomies of ICC. METHODS: Eleven consecutive patients, diagnosed with intrahepatic cholangiocarcinoma and underwent laparoscopic liver resection between April 2017 and December 2018, were retrospectively reviewed. A laparoscopic IGFI navigation system was used to characterize fluorescence patterns of ICC with intraoperative liver segment demarcation by means of negative counterstaining. RESULTS: Fusion IGFI of ICC was successfully obtained from all 11 patients from the surgical specimens. The fluorescence patterns of ICC can be categorized into rim-type fluorescence and segmental fluorescence, depending on tumor growth. In eight patients, indocyanine green fluorescence imaging was used to identify the hepatic lobes or segments by negative counterstaining. In six cases, a valid and persistent demarcation was achieved intraoperatively. CONCLUSION: Laparoscopic IGFI system could identify different types of ICC lesions and may facilitate real-time navigation for laparoscopic anatomic liver resection of ICC.


Asunto(s)
Neoplasias de los Conductos Biliares/diagnóstico por imagen , Neoplasias de los Conductos Biliares/cirugía , Colangiocarcinoma/diagnóstico por imagen , Colangiocarcinoma/cirugía , Verde de Indocianina/administración & dosificación , Imagen Óptica/métodos , Anciano , Anciano de 80 o más Años , Colorantes/administración & dosificación , Estudios de Factibilidad , Femenino , Humanos , Periodo Intraoperatorio , Laparoscopía , Masculino , Persona de Mediana Edad , Proyectos Piloto , Cuidados Preoperatorios/métodos , Estudios Retrospectivos , Coloración y Etiquetado/métodos
14.
Acta Pharmacol Sin ; 41(4): 471-482, 2020 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-32112042

RESUMEN

Parkinson's disease (PD) is the second most common progressive neurodegenerative disease worldwide. However, there is no available therapy reversing the neurodegenerative process of PD. Based on the loss of dopamine or dopaminergic dysfunction in PD patients, most of the current therapies focus on symptomatic relief to improve patient quality of life. As dopamine replacement treatment remains the most effective symptomatic pharmacotherapy for PD, herein we provide an overview of the current pharmacotherapies, summarize the clinical development status of novel dopaminergic agents, and highlight the challenge and opportunity of emerging preclinical dopaminergic approaches aimed at managing the features and progression of PD.


Asunto(s)
Antiparkinsonianos/uso terapéutico , Dopamina/uso terapéutico , Enfermedad de Parkinson/tratamiento farmacológico , Animales , Antiparkinsonianos/química , Dopamina/química , Humanos
15.
Phytopathology ; 110(5): 999-1009, 2020 May.
Artículo en Inglés | MEDLINE | ID: mdl-32096697

RESUMEN

Melatonin is a multifunctional molecule that confers tolerance to a number of biotic and abiotic stresses in plants. However, the role of melatonin in plant response to Fusarium oxysporum and the interaction with arbuscular mycorrhizal fungi (AMF) remain unclear. Here we show that exogenous melatonin application promoted the AMF colonization rate in cucumber roots, which potentially suppressed Fusarium wilt as evidenced by a decreased disease index and an increased control effect. Leaf gas exchange analysis revealed that Fusarium inoculation significantly decreased the net photosynthetic rate (Pn), stomatal conductance (Gs), intercellular CO2 concentrations (Ci), and transpiration rate (Tr). Intriguingly, either melatonin application or AMF inoculation significantly increased the Pn, Gs, Tr, and dry biomass, and their combined treatment showed a more profound effect under Fusarium stress. Further analysis showed that Fusarium induced oxidative stress as evidenced by increased lipid peroxidation and electrolyte leakage. Conversely, either melatonin or AMF drastically attenuated the levels of malondialdehyde, H2O2, and electrolyte leakage in Fusarium-inoculated plants, and their combined treatment caused a further decrease. Fusarium inoculation decreased the activity and transcripts of superoxide dismutase and ascorbate peroxidase, and the content of glutathione and proline. Besides, the activity and transcripts of peroxidase and catalase, the content of phenols and flavonoids increased after Fusarium infection. Importantly, melatonin and/or AMF significantly increased those parameters with the greatest effect with their combined treatment under Fusarium stress. Our results suggest that a positive collaboration between melatonin and AMF enhances resistance to Fusarium wilt in cucumber plants.


Asunto(s)
Cucumis sativus , Fusarium , Melatonina , Micorrizas , Peróxido de Hidrógeno , Enfermedades de las Plantas
16.
Nutr J ; 19(1): 111, 2020 10 04.
Artículo en Inglés | MEDLINE | ID: mdl-33012287

RESUMEN

BACKGROUND: Nutrients involved in one-carbon metabolism may play a key role in pancreatic carcinogenesis. The aim of this study was to examine the association between pancreatic cancer risk and intake or blood levels of vitamins B6, B12 and methionine via meta-analysis. METHODS: A systematic search was performed in PubMed, Web of Knowledge and Chinese National Knowledge Infrastructure (CNKI) up to April 2020 to identify relevant studies. Risk estimates and their 95% confidence intervals (CIs) were retrieved from the studies and combined by a random-effect model. RESULTS: A total of 18 studies were included in this meta-analysis on the association of vitamin B6, B12 and methionine with pancreatic cancer risk. The combined risk estimate (95% CI) of pancreatic cancer for the highest vs lowest category of vitamin B6 intake and blood pyridoxal 5'-phosphate (PLP, active form of vitamin B6) levels was 0.63 (0.48-0.79) and 0.65 (0.52-0.79), respectively. The results indicated a non-linear dose-response relationship between vitamin B6 intake and pancreatic risk. Linear dose-response relationship was found, and the risk of pancreatic cancer decreased by 9% for every 10 nmol/L increment in blood PLP levels. No significant association were found between pancreatic cancer risk and vitamin B12 intake, blood vitamin B12 levels, methionine intake and blood methionine levels. CONCLUSION: Our study suggests that high intake of vitamin B6 and high concentration of blood PLP levels may be protective against the development of pancreatic cancer. Further research are warranted to confirm the results.


Asunto(s)
Neoplasias Pancreáticas , Vitamina B 6 , Dieta , Ácido Fólico , Humanos , Metionina , Neoplasias Pancreáticas/epidemiología , Factores de Riesgo , Vitamina B 12
17.
Genomics ; 111(4): 886-892, 2019 07.
Artículo en Inglés | MEDLINE | ID: mdl-29842950

RESUMEN

Knowledge of protein subcellular localization is vitally important for both basic research and drug development. With the avalanche of protein sequences emerging in the post-genomic age, it is highly desired to develop computational tools for timely and effectively identifying their subcellular localization purely based on the sequence information alone. Recently, a predictor called "pLoc-mGpos" was developed for identifying the subcellular localization of Gram-positive bacterial proteins. Its performance is overwhelmingly better than that of the other predictors for the same purpose, particularly in dealing with multi-label systems in which some proteins, called "multiplex proteins", may simultaneously occur in two or more subcellular locations. Although it is indeed a very powerful predictor, more efforts are definitely needed to further improve it. This is because pLoc-mGpos was trained by an extremely skewed dataset in which some subset (subcellular location) was over 11 times the size of the other subsets. Accordingly, it cannot avoid the bias consequence caused by such an uneven training dataset. To alleviate such bias consequence, we have developed a new and bias-reducing predictor called pLoc_bal-mGpos by quasi-balancing the training dataset. Rigorous target jackknife tests on exactly the same experiment-confirmed dataset have indicated that the proposed new predictor is remarkably superior to pLoc-mGpos, the existing state-of-the-art predictor in identifying the subcellular localization of Gram-positive bacterial proteins. To maximize the convenience for most experimental scientists, a user-friendly web-server for the new predictor has been established at http://www.jci-bioinfo.cn/pLoc_bal-mGpos/, by which users can easily get their desired results without the need to go through the detailed mathematics.


Asunto(s)
Proteínas Bacterianas/genética , Bacterias Grampositivas/genética , Análisis de Secuencia de Proteína/métodos , Programas Informáticos , Proteínas Bacterianas/metabolismo , Membrana Celular/metabolismo , Citoplasma/metabolismo , Transporte de Proteínas
18.
Org Biomol Chem ; 17(8): 2242-2246, 2019 02 20.
Artículo en Inglés | MEDLINE | ID: mdl-30720821

RESUMEN

The Michael reaction is widely used for the C-C coupling of electron-poor olefins and C(sp3)-H pronucleophiles. Herein, an effective Michael reaction approach between electron-rich aromatic and heteroaromatic substrates as C(sp2)-H nucleophiles with maleimides as electrophiles in 1,1,1,3,3,3-hexafluoro-2-propanol (HFIP) was first presented without the need for any additional metal catalysts or reagents. This reaction provides a concise and environmentally friendly strategy for the facile construction of 3-aryl succinimides from N,N-disubstituted anilines and maleimides with high para selectivity.

19.
PLoS Comput Biol ; 13(4): e1005518, 2017 04.
Artículo en Inglés | MEDLINE | ID: mdl-28437450

RESUMEN

The rapid development of sequencing technology has led to an explosive accumulation of genomic sequence data. Clustering is often the first step to perform in sequence analysis, and hierarchical clustering is one of the most commonly used approaches for this purpose. However, it is currently computationally expensive to perform hierarchical clustering of extremely large sequence datasets due to its quadratic time and space complexities. In this paper we developed a new algorithm called ESPRIT-Forest for parallel hierarchical clustering of sequences. The algorithm achieves subquadratic time and space complexity and maintains a high clustering accuracy comparable to the standard method. The basic idea is to organize sequences into a pseudo-metric based partitioning tree for sub-linear time searching of nearest neighbors, and then use a new multiple-pair merging criterion to construct clusters in parallel using multiple threads. The new algorithm was tested on the human microbiome project (HMP) dataset, currently one of the largest published microbial 16S rRNA sequence dataset. Our experiment demonstrated that with the power of parallel computing it is now compu- tationally feasible to perform hierarchical clustering analysis of tens of millions of sequences. The software is available at http://www.acsu.buffalo.edu/∼yijunsun/lab/ESPRIT-Forest.html.


Asunto(s)
Algoritmos , Análisis por Conglomerados , Alineación de Secuencia/métodos , Análisis de Secuencia de ARN/métodos , Biología Computacional , Bases de Datos Genéticas , Humanos , Microbiota/genética , ARN Ribosómico 16S/genética
20.
Tumour Biol ; 39(6): 1010428317705338, 2017 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-28656879

RESUMEN

Hepatocellular carcinoma is third leading cause of cancer-related death globally. Long non-coding RNA plasmacytoma variant translocation 1 has been reported to be dysregulated and plays a crucial role in various cancers. In this study, we investigated the interactions between plasmacytoma variant translocation 1 and miR-186-5p in the progression of hepatocellular carcinoma and explored the functional significance of plasmacytoma variant translocation 1. It was determined that plasmacytoma variant translocation 1 was significantly higher, while miR-186-5p was statistically lower in the hepatocellular carcinoma tissues than that in the adjacent normal tissues. Using gain-of-function and loss-of-function methods, our results revealed that plasmacytoma variant translocation 1 affected hepatocellular carcinoma cells proliferation, invasion, and migration. It was found that there was direct interaction between miR-186-5p and the binding site of plasmacytoma variant translocation 1 by performing dual-luciferase assay and RNA immunoprecipitation assay. Furthermore, it was identified that plasmacytoma variant translocation 1 regulated the expression of the miR-186-5p target gene, yes-associated protein 1. Taken together, plasmacytoma variant translocation 1 served as an endogenous sponge for miR-186-5p to reduce its inhibiting effect on yes-associated protein 1 and thus promoted the tumorigenesis of hepatocellular carcinoma.


Asunto(s)
Proteínas Adaptadoras Transductoras de Señales/biosíntesis , Carcinoma Hepatocelular/genética , Neoplasias Hepáticas/genética , MicroARNs/genética , Fosfoproteínas/biosíntesis , ARN Largo no Codificante/genética , Proteínas Adaptadoras Transductoras de Señales/genética , Adulto , Anciano , Sitios de Unión , Carcinogénesis/genética , Carcinoma Hepatocelular/patología , Movimiento Celular/genética , Proliferación Celular/genética , Proteínas de Unión al ADN/genética , Progresión de la Enfermedad , Femenino , Regulación Neoplásica de la Expresión Génica , Humanos , Neoplasias Hepáticas/patología , Masculino , MicroARNs/metabolismo , Persona de Mediana Edad , Invasividad Neoplásica/genética , Metástasis de la Neoplasia , Fosfoproteínas/genética , ARN Largo no Codificante/metabolismo , Factores de Transcripción , Proteínas Señalizadoras YAP
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