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1.

Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies.

Kennedy, Katherine M; de Goffau, Marcus C; Perez-Muñoz, Maria Elisa; Arrieta, Marie-Claire; Bäckhed, Fredrik; Bork, Peer; Braun, Thorsten; Bushman, Frederic D; Dore, Joel; de Vos, Willem M; Earl, Ashlee M; Eisen, Jonathan A; Elovitz, Michal A; Ganal-Vonarburg, Stephanie C; Gänzle, Michael G; Garrett, Wendy S; Hall, Lindsay J; Hornef, Mathias W; Huttenhower, Curtis; Konnikova, Liza; Lebeer, Sarah; Macpherson, Andrew J; Massey, Ruth C; McHardy, Alice Carolyn; Koren, Omry; Lawley, Trevor D; Ley, Ruth E; O'Mahony, Liam; O'Toole, Paul W; Pamer, Eric G; Parkhill, Julian; Raes, Jeroen; Rattei, Thomas; Salonen, Anne; Segal, Eran; Segata, Nicola; Shanahan, Fergus; Sloboda, Deborah M; Smith, Gordon C S; Sokol, Harry; Spector, Tim D; Surette, Michael G; Tannock, Gerald W; Walker, Alan W; Yassour, Moran; Walter, Jens.

Nature ; 613(7945): 639-649, 2023 01.

Artículo en Inglés | MEDLINE | ID: mdl-36697862

2.

The Intestinal Microbiota Contributes to the Ability of Helminths to Modulate Allergic Inflammation.

Zaiss, Mario M; Rapin, Alexis; Lebon, Luc; Dubey, Lalit Kumar; Mosconi, Ilaria; Sarter, Kerstin; Piersigilli, Alessandra; Menin, Laure; Walker, Alan W; Rougemont, Jacques; Paerewijck, Oonagh; Geldhof, Peter; McCoy, Kathleen D; Macpherson, Andrew J; Croese, John; Giacomin, Paul R; Loukas, Alex; Junt, Tobias; Marsland, Benjamin J; Harris, Nicola L.

Immunity ; 43(5): 998-1010, 2015 Nov 17.

Artículo en Inglés | MEDLINE | ID: mdl-26522986

3.

The transcription factor T-bet regulates intestinal inflammation mediated by interleukin-7 receptor+ innate lymphoid cells.

Powell, Nick; Walker, Alan W; Stolarczyk, Emilie; Canavan, James B; Gökmen, M Refik; Marks, Ellen; Jackson, Ian; Hashim, Ahmed; Curtis, Michael A; Jenner, Richard G; Howard, Jane K; Parkhill, Julian; MacDonald, Thomas T; Lord, Graham M.

Immunity ; 37(4): 674-84, 2012 Oct 19.

Artículo en Inglés | MEDLINE | ID: mdl-23063332

4.

Ruminococcoides bili gen. nov., sp. nov., a bile-resistant bacterium from human bile with autolytic behavior.

Molinero, Natalia; Conti, Elena; Sánchez, Borja; Walker, Alan W; Margolles, Abelardo; Duncan, Sylvia H; Delgado, Susana.

Int J Syst Evol Microbiol ; 71(8)2021 Aug.

Artículo en Inglés | MEDLINE | ID: mdl-34398726

5.

Relative abundance of the Prevotella genus within the human gut microbiota of elderly volunteers determines the inter-individual responses to dietary supplementation with wheat bran arabinoxylan-oligosaccharides.

Chung, Wing Sun Faith; Walker, Alan W; Bosscher, Douwina; Garcia-Campayo, Vicenta; Wagner, Josef; Parkhill, Julian; Duncan, Sylvia H; Flint, Harry J.

BMC Microbiol ; 20(1): 283, 2020 09 14.

Artículo en Inglés | MEDLINE | ID: mdl-32928123

6.

The environmental stress sensitivities of pathogenic Candida species, including Candida auris, and implications for their spread in the hospital setting.

Heaney, Helen; Laing, Juliette; Paterson, Linda; Walker, Alan W; Gow, Neil A R; Johnson, Elizabeth M; MacCallum, Donna M; Brown, Alistair J P.

Med Mycol ; 58(6): 744-755, 2020 Aug 01.

Artículo en Inglés | MEDLINE | ID: mdl-31912151

7.

TPL-2 restricts Ccl24-dependent immunity to Heligmosomoides polygyrus.

Kannan, Yashaswini; Entwistle, Lewis J; Pelly, Victoria S; Perez-Lloret, Jimena; Walker, Alan W; Ley, Steven C; Wilson, Mark S.

PLoS Pathog ; 13(7): e1006536, 2017 Jul.

Artículo en Inglés | MEDLINE | ID: mdl-28759611

8.

Studying the microbiome and its complexities: an interview with Alan Walker.

Walker, Alan W.

BMC Biol ; 16(1): 134, 2018 11 01.

Artículo en Inglés | MEDLINE | ID: mdl-30382878

9.

Sporulation capability and amylosome conservation among diverse human colonic and rumen isolates of the keystone starch-degrader Ruminococcus bromii.

Mukhopadhya, Indrani; Moraïs, Sarah; Laverde-Gomez, Jenny; Sheridan, Paul O; Walker, Alan W; Kelly, William; Klieve, Athol V; Ouwerkerk, Diane; Duncan, Sylvia H; Louis, Petra; Koropatkin, Nicole; Cockburn, Darrell; Kibler, Ryan; Cooper, Philip J; Sandoval, Carlos; Crost, Emmanuelle; Juge, Nathalie; Bayer, Edward A; Flint, Harry J.

Environ Microbiol ; 20(1): 324-336, 2018 01.

Artículo en Inglés | MEDLINE | ID: mdl-29159997

10.

Bacterial microbiota of the upper respiratory tract and childhood asthma.

Depner, Martin; Ege, Markus J; Cox, Michael J; Dwyer, Sarah; Walker, Alan W; Birzele, Lena T; Genuneit, Jon; Horak, Elisabeth; Braun-Fahrländer, Charlotte; Danielewicz, Hanna; Maier, Raina M; Moffatt, Miriam F; Cookson, William O; Heederik, Dick; von Mutius, Erika; Legatzki, Antje.

J Allergy Clin Immunol ; 139(3): 826-834.e13, 2017 Mar.

Artículo en Inglés | MEDLINE | ID: mdl-27576124

11.

TLR signaling modulates side effects of anticancer therapy in the small intestine.

Frank, Magdalena; Hennenberg, Eva Maria; Eyking, Annette; Rünzi, Michael; Gerken, Guido; Scott, Paul; Parkhill, Julian; Walker, Alan W; Cario, Elke.

J Immunol ; 194(4): 1983-95, 2015 Feb 15.

Artículo en Inglés | MEDLINE | ID: mdl-25589072

12.

Modulation of the human gut microbiota by dietary fibres occurs at the species level.

Chung, Wing Sun Faith; Walker, Alan W; Louis, Petra; Parkhill, Julian; Vermeiren, Joan; Bosscher, Douwina; Duncan, Sylvia H; Flint, Harry J.

BMC Biol ; 14: 3, 2016 Jan 11.

Artículo en Inglés | MEDLINE | ID: mdl-26754945

13.

Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment.

Pop, Mihai; Paulson, Joseph N; Chakraborty, Subhra; Astrovskaya, Irina; Lindsay, Brianna R; Li, Shan; Bravo, Héctor Corrada; Harro, Clayton; Parkhill, Julian; Walker, Alan W; Walker, Richard I; Sack, David A; Stine, O Colin.

BMC Genomics ; 17: 440, 2016 06 08.

Artículo en Inglés | MEDLINE | ID: mdl-27277524

14.

Interleukin 6 Increases Production of Cytokines by Colonic Innate Lymphoid Cells in Mice and Patients With Chronic Intestinal Inflammation.

Powell, Nick; Lo, Jonathan W; Biancheri, Paolo; Vossenkämper, Anna; Pantazi, Eirini; Walker, Alan W; Stolarczyk, Emilie; Ammoscato, Francesca; Goldberg, Rimma; Scott, Paul; Canavan, James B; Perucha, Esperanza; Garrido-Mesa, Natividad; Irving, Peter M; Sanderson, Jeremy D; Hayee, Bu; Howard, Jane K; Parkhill, Julian; MacDonald, Thomas T; Lord, Graham M.

Gastroenterology ; 149(2): 456-67.e15, 2015 Aug.

Artículo en Inglés | MEDLINE | ID: mdl-25917784

15.

Wheat bran promotes enrichment within the human colonic microbiota of butyrate-producing bacteria that release ferulic acid.

Duncan, Sylvia H; Russell, Wendy R; Quartieri, Andrea; Rossi, Maddalena; Parkhill, Julian; Walker, Alan W; Flint, Harry J.

Environ Microbiol ; 18(7): 2214-25, 2016 07.

Artículo en Inglés | MEDLINE | ID: mdl-26636660

16.

Studying the Human Microbiota.

Walker, Alan W.

Adv Exp Med Biol ; 902: 5-32, 2016.

Artículo en Inglés | MEDLINE | ID: mdl-27161348

17.

Microbiota that affect risk for shigellosis in children in low-income countries.

Lindsay, Brianna; Oundo, Joe; Hossain, M Anowar; Antonio, Martin; Tamboura, Boubou; Walker, Alan W; Paulson, Joseph N; Parkhill, Julian; Omore, Richard; Faruque, Abu S G; Das, Suman Kumar; Ikumapayi, Usman N; Adeyemi, Mitchell; Sanogo, Doh; Saha, Debasish; Sow, Samba; Farag, Tamer H; Nasrin, Dilruba; Li, Shan; Panchalingam, Sandra; Levine, Myron M; Kotloff, Karen; Magder, Laurence S; Hungerford, Laura; Sommerfelt, Halvor; Pop, Mihai; Nataro, James P; Stine, O Colin.

Emerg Infect Dis ; 21(2): 242-50, 2015 Feb.

Artículo en Inglés | MEDLINE | ID: mdl-25625766

18.

Gut inflammation can boost horizontal gene transfer between pathogenic and commensal Enterobacteriaceae.

Stecher, Bärbel; Denzler, Rémy; Maier, Lisa; Bernet, Florian; Sanders, Mandy J; Pickard, Derek J; Barthel, Manja; Westendorf, Astrid M; Krogfelt, Karen A; Walker, Alan W; Ackermann, Martin; Dobrindt, Ulrich; Thomson, Nicholas R; Hardt, Wolf-Dietrich.

Proc Natl Acad Sci U S A ; 109(4): 1269-74, 2012 Jan 24.

Artículo en Inglés | MEDLINE | ID: mdl-22232693

19.

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses.

Salter, Susannah J; Cox, Michael J; Turek, Elena M; Calus, Szymon T; Cookson, William O; Moffatt, Miriam F; Turner, Paul; Parkhill, Julian; Loman, Nicholas J; Walker, Alan W.

BMC Biol ; 12: 87, 2014 Nov 12.

Artículo en Inglés | MEDLINE | ID: mdl-25387460

20.

Time between collection and storage significantly influences bacterial sequence composition in sputum samples from cystic fibrosis respiratory infections.

Cuthbertson, Leah; Rogers, Geraint B; Walker, Alan W; Oliver, Anna; Hafiz, Tarana; Hoffman, Lucas R; Carroll, Mary P; Parkhill, Julian; Bruce, Kenneth D; van der Gast, Christopher J.

J Clin Microbiol ; 52(8): 3011-6, 2014 Aug.

Artículo en Inglés | MEDLINE | ID: mdl-24920767

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