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1.
Protein Expr Purif ; 188: 105977, 2021 12.
Artículo en Inglés | MEDLINE | ID: mdl-34547433

RESUMEN

Homoserine dehydrogenase (HSD), encoded by the hom gene, is a key enzyme in the aspartate pathway, which reversibly catalyzes the conversion of l-aspartate ß-semialdehyde to l-homoserine (l-Hse), using either NAD(H) or NADP(H) as a coenzyme. In this work, we presented the first characterization of the HSD from the symbiotic Polynucleobacter necessaries subsp. necessarius (PnHSD) produced in Escherichia coli. Sequence analysis showed that PnHSD is an ACT domain-containing monofunctional HSD with 436 amnio acid residues. SDS-PAGE and Western blot demonstrated that PnHSD could be overexpressed in E. coli BL21(DE3) cell as a soluble form by using SUMO fusion technique. It could be purified to apparent homogeneity for biochemical characterization. Size-exclusion chromatography revealed that the purified PnHSD has a native molecular mass of ∼160 kDa, indicating a homotetrameric structure. The oxidation activity of PnHSD was studied in this work. Kinetic analysis revealed that PnHSD displayed an up to 1460-fold preference for NAD+ over NADP+, in contrast to its homologs. The purified PnHSD displayed maximal activity at 35 °C and pH 11. Similar to its NAD+-dependent homolog, neither NaCl and KCl activation nor L-Thr inhibition on the enzymatic activity of PnHSD was observed. These results will contribute to a better understanding of the coenzyme specificity of the HSD family and the aspartate pathway of P. necessarius.


Asunto(s)
Ácido Aspártico/biosíntesis , Proteínas Bacterianas/genética , Burkholderiaceae/enzimología , Homoserina Deshidrogenasa/genética , NAD/metabolismo , Proteínas Recombinantes de Fusión/genética , Secuencia de Aminoácidos , Ácido Aspártico/análogos & derivados , Ácido Aspártico/metabolismo , Proteínas Bacterianas/biosíntesis , Proteínas Bacterianas/aislamiento & purificación , Burkholderiaceae/química , Burkholderiaceae/genética , Cromatografía en Gel , Clonación Molecular , Escherichia coli/genética , Escherichia coli/metabolismo , Euplotes/microbiología , Expresión Génica , Vectores Genéticos/química , Vectores Genéticos/metabolismo , Homoserina/metabolismo , Homoserina Deshidrogenasa/biosíntesis , Homoserina Deshidrogenasa/aislamiento & purificación , Cinética , Peso Molecular , NADP/metabolismo , Multimerización de Proteína , Proteínas Recombinantes de Fusión/biosíntesis , Proteínas Recombinantes de Fusión/aislamiento & purificación , Alineación de Secuencia , Homología de Secuencia de Aminoácido , Proteínas Modificadoras Pequeñas Relacionadas con Ubiquitina/genética , Proteínas Modificadoras Pequeñas Relacionadas con Ubiquitina/metabolismo , Simbiosis/fisiología
2.
Protein Expr Purif ; 186: 105909, 2021 10.
Artículo en Inglés | MEDLINE | ID: mdl-34022392

RESUMEN

Gonorrhoea, caused by Neisseria gonorrhoeae, is a major global public health concern. Homoserine dehydrogenase (HSD), a key enzyme in the aspartate pathway, is a promising metabolic target against pathogenic infections. In this study, a monofunctional HSD from N. gonorrhoeae (NgHSD) was overexpressed in Escherichia coli and purified to >95% homogeneity for biochemical characterization. Unlike the classic dimeric structure, the purified recombinant NgHSD exists as a tetramer in solution. We determined the enzymatic activity of recombinant NgHSD for l-homoserine oxidation, which revealed that this enzyme was NAD+ dependent, with an approximate 479-fold (kcat/Km) preference for NAD+ over NADP+, and that optimal activity for l-homoserine oxidation occurred at pH 10.5 and 40 °C. At 800 mM, neither NaCl nor KCl increased the activity of NgHSD, in contrast to the behavior of several reported NAD+-independent homologs. Moreover, threonine did not markedly inhibit the oxidation activity of NgHSD. To gain insight into the cofactor specificity, site-directed mutagenesis was used to alter coenzyme specificity. The double mutant L45R/S46R, showing the highest affinity for NADP+, caused a shift in coenzyme preference from NAD+ to NADP+ by a factor of ~974, with a catalytic efficiency comparable with naturally occurring NAD+-independent homologs. Collectively, our results should allow the exploration of drugs targeting NgHSD to treat gonococcal infections and contribute to the prediction of the coenzyme specificity of novel HSDs.


Asunto(s)
Coenzimas , Homoserina Deshidrogenasa , NAD , Neisseria gonorrhoeae , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Coenzimas/química , Coenzimas/metabolismo , Escherichia coli/genética , Gonorrea/microbiología , Homoserina Deshidrogenasa/genética , Homoserina Deshidrogenasa/metabolismo , Humanos , Mutagénesis Sitio-Dirigida , NAD/química , NAD/metabolismo , NADP/química , NADP/metabolismo , Neisseria gonorrhoeae/enzimología , Neisseria gonorrhoeae/genética , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Especificidad por Sustrato/genética
3.
Appl Microbiol Biotechnol ; 105(18): 6899-6908, 2021 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-34455479

RESUMEN

Lysine, a nutritionally important amino acid, is involved in adaptation and tolerance to environmental stresses in various organisms. Previous studies reported that lysine accumulation occurs in response to stress and that lysine supplementation enhances stress tolerance; however, the effect of lysine biosynthesis enhancement on stress tolerance has yet to be elucidated. In this study, we confirmed that lysine supplementation to the culture medium increased intracellular lysine content and improved cell growth of Escherichia coli at high temperature (42.5 °C). Lysine-overproducing strains were then isolated from the lysine analogue S-adenosylmethionine-resistant mutants by conventional mutagenesis and exhibited higher tolerance to high-temperature stress than the wild-type strain. We identified novel amino acid substitutions Gly474Asp and Cys554Tyr on ThrA, a bifunctional aspartate kinase/homoserine dehydrogenase (AK/HSDH), in the lysine-overproducing mutants. Interestingly, the Gly474Asp and Cys554Tyr variants of ThrA induced lysine accumulation and conferred high-temperature stress tolerance to E. coli cells. Enzymatic analysis revealed that the Gly474Asp substitution in ThrA reduced HSDH activity, suggesting that the intracellular level of aspartate semialdehyde, which is a substrate for HSDH and an intermediate for lysine biosynthesis, is elevated by the loss of HSDH activity and converted to lysine in E. coli. The present study demonstrated that both lysine supplementation and lysine biosynthesis enhancement improved the high-temperature stress tolerance of E. coli cells. Our findings suggest that lysine-overproducing strains have the potential as stress-tolerant microorganisms and can be applied to robust host cells for microbial production of useful compounds. KEY POINTS: • Lysine supplementation improved the growth of E. coli cells at high temperature. • The G474D and C554Y variant ThrA increased lysine productivity in E. coli cells. • The G474D substitution in ThrA reduced homoserine dehydrogenase activity. • E. coli cells that overproduce lysine exhibited high-temperature stress tolerance.


Asunto(s)
Aspartoquinasa Homoserina Deshidrogenasa , Escherichia coli , Aminoácidos , Escherichia coli/genética , Lisina , Temperatura
4.
J Pept Sci ; 24(1)2018 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-29322651

RESUMEN

The antifungal activity of 5-hydroxy-4-oxo-l-norvaline (HONV), exhibited under conditions mimicking human serum, may be improved upon incorporation of this amino acid into a dipeptide structure. Several HONV-containing dipeptides inhibited growth of human pathogenic yeasts of the Candida genus in the RPMI-1640 medium, with minimal inhibitory concentration values in the 32 to 64 µg mL-1 range. This activity was not affected by multidrug resistance that is caused by overexpression of genes encoding drug efflux proteins. The mechanism of antifungal action of HONV dipeptides involved uptake by the oligopeptide transport system, subsequent intracellular cleavage by cytosolic peptidases, and inhibition of homoserine dehydrogenase by the released HONV. The relative transport rates determined the anticandidal activity of HONV dipeptides.


Asunto(s)
Antifúngicos/farmacología , Candida albicans/efectos de los fármacos , Candida albicans/enzimología , Dipéptidos/farmacología , Inhibidores Enzimáticos/farmacología , Homoserina Deshidrogenasa/antagonistas & inhibidores , Valina/análogos & derivados , Valina/farmacología , Antifúngicos/síntesis química , Antifúngicos/química , Dipéptidos/síntesis química , Dipéptidos/química , Relación Dosis-Respuesta a Droga , Inhibidores Enzimáticos/síntesis química , Inhibidores Enzimáticos/química , Homoserina Deshidrogenasa/metabolismo , Pruebas de Sensibilidad Microbiana , Conformación Molecular , Relación Estructura-Actividad , Valina/síntesis química , Valina/química
5.
Biosci Biotechnol Biochem ; 82(12): 2084-2093, 2018 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-30175674

RESUMEN

The orientation of the three domains in the bifunctional aspartate kinase-homoserine dehydrogenase (AK-HseDH) homologue found in Thermotoga maritima totally differs from those observed in previously known AK-HseDHs; the domains line up in the order HseDH, AK, and regulatory domain. In the present study, the enzyme produced in Escherichia coli was characterized. The enzyme exhibited substantial activities of both AK and HseDH. L-Threonine inhibits AK activity in a cooperative manner, similar to that of Arabidopsis thaliana AK-HseDH. However, the concentration required to inhibit the activity was much lower (K0.5 = 37 µM) than that needed to inhibit the A. thaliana enzyme (K0.5 = 500 µM). In contrast to A. thaliana AK-HseDH, Hse oxidation of the T. maritima enzyme was almost impervious to inhibition by L-threonine. Amino acid sequence comparison indicates that the distinctive sequence of the regulatory domain in T. maritima AK-HseDH is likely responsible for the unique sensitivity to L-threonine. Abbreviations: AK: aspartate kinase; HseDH: homoserine dehydrogenase; AK-HseDH: bifunctional aspartate kinase-homoserine dehydrogenase; AsaDH: aspartate-ß-semialdehyde dehydrogenase; ACT: aspartate kinases (A), chorismate mutases (C), and prephenate dehydrogenases (TyrA, T).


Asunto(s)
Aspartoquinasa Homoserina Deshidrogenasa/metabolismo , Thermotoga maritima/enzimología , Secuencia de Aminoácidos , Ácido Aspártico/metabolismo , Aspartoquinasa Homoserina Deshidrogenasa/química , Aspartoquinasa Homoserina Deshidrogenasa/genética , Biocatálisis , Electroforesis en Gel de Poliacrilamida , Estabilidad de Enzimas , Escherichia coli/genética , Calor , Concentración de Iones de Hidrógeno , Cinética , Conformación Proteica , Proteínas Recombinantes/genética , Homología de Secuencia de Aminoácido , Treonina/metabolismo
6.
Artículo en Inglés | MEDLINE | ID: mdl-28652239

RESUMEN

This work evaluated new potential inhibitors of the enzyme homoserine dehydrogenase (HSD) of Paracoccidioides brasiliensis, one of the etiological agents of paracoccidioidomycosis. The tertiary structure of the protein bonded to the analogue NAD, and l-homoserine was modeled by homology. The model with the best output was subjected to gradient minimization, redocking, and molecular dynamics simulation. Virtual screening simulations with 187,841 molecules purchasable from the Zinc database were performed. After the screenings, 14 molecules were selected and analyzed by the use of absorption, distribution, metabolism, excretion, and toxicity criteria, resulting in four compounds for in vitro assays. The molecules HS1 and HS2 were promising, exhibiting MICs of 64 and 32 µg · ml-1, respectively, for the Pb18 isolate of P. brasilensis, 64 µg · ml-1 for two isolates of P. lutzii, and also synergy with itraconazole. The application of these molecules to human-pathogenic fungi confirmed that the HSD enzyme may be used as a target for the development of drugs with specific action against paracoccidioidomycosis; moreover, these compounds may serve as leads in the design of new antifungals.


Asunto(s)
Antifúngicos/farmacología , Homoserina Deshidrogenasa/metabolismo , Paracoccidioides/efectos de los fármacos , Paracoccidioidomicosis/tratamiento farmacológico , Línea Celular Tumoral , Células HeLa , Humanos , Itraconazol/farmacología , Pruebas de Sensibilidad Microbiana/métodos , Paracoccidioides/metabolismo , Paracoccidioidomicosis/metabolismo
7.
J Ind Microbiol Biotechnol ; 43(6): 873-85, 2016 06.
Artículo en Inglés | MEDLINE | ID: mdl-27033538

RESUMEN

Previously we have characterized a threonine dehydratase mutant TD(F383V) (encoded by ilvA1) and an acetohydroxy acid synthase mutant AHAS(P176S, D426E, L575W) (encoded by ilvBN1) in Corynebacterium glutamicum IWJ001, one of the best L-isoleucine producing strains. Here, we further characterized an aspartate kinase mutant AK(A279T) (encoded by lysC1) and a homoserine dehydrogenase mutant HD(G378S) (encoded by hom1) in IWJ001, and analyzed the consequences of all these mutant enzymes on amino acids production in the wild type background. In vitro enzyme tests confirmed that AK(A279T) is completely resistant to feed-back inhibition by L-threonine and L-lysine, and that HD(G378S) is partially resistant to L-threonine with the half maximal inhibitory concentration between 12 and 14 mM. In C. glutamicum ATCC13869, expressing lysC1 alone led to exclusive L-lysine accumulation, co-expressing hom1 and thrB1 with lysC1 shifted partial carbon flux from L-lysine (decreased by 50.1 %) to L-threonine (4.85 g/L) with minor L-isoleucine and no L-homoserine accumulation, further co-expressing ilvA1 completely depleted L-threonine and strongly shifted carbon flux from L-lysine (decreased by 83.0 %) to L-isoleucine (3.53 g/L). The results demonstrated the strongly feed-back resistant TD(F383V) might be the main driving force for L-isoleucine over-synthesis in this case, and the partially feed-back resistant HD(G378S) might prevent the accumulation of toxic intermediates. Information exploited from such mutation-bred production strain would be useful for metabolic engineering.


Asunto(s)
Aspartato Quinasa/metabolismo , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Corynebacterium glutamicum/enzimología , Homoserina Deshidrogenasa/metabolismo , Isoleucina/biosíntesis , Aminoácidos/metabolismo , Corynebacterium glutamicum/genética , Medios de Cultivo/química , Fragmentación del ADN , Fermentación , Microbiología Industrial , Lisina/metabolismo , Ingeniería Metabólica , Treonina/biosíntesis
8.
Acta Crystallogr D Biol Crystallogr ; 71(Pt 5): 1216-25, 2015 May.
Artículo en Inglés | MEDLINE | ID: mdl-25945586

RESUMEN

Homoserine dehydrogenase (HSD) is an oxidoreductase in the aspartic acid pathway. This enzyme coordinates a critical branch point of the metabolic pathway that leads to the synthesis of bacterial cell-wall components such as L-lysine and m-DAP in addition to other amino acids such as L-threonine, L-methionine and L-isoleucine. Here, a structural rationale for the hydride-transfer step in the reaction mechanism of HSD is reported. The structure of Staphylococcus aureus HSD was determined at different pH conditions to understand the basis for the enhanced enzymatic activity at basic pH. An analysis of the crystal structure revealed that Lys105, which is located at the interface of the catalytic and cofactor-binding sites, could mediate the hydride-transfer step of the reaction mechanism. The role of Lys105 was subsequently confirmed by mutational analysis. Put together, these studies reveal the role of conserved water molecules and a lysine residue in hydride transfer between the substrate and the cofactor.


Asunto(s)
Homoserina Deshidrogenasa/química , Homoserina Deshidrogenasa/metabolismo , Lisina/química , Proteínas Mutantes/química , Proteínas Mutantes/metabolismo , Staphylococcus aureus/enzimología , Sitios de Unión , Catálisis , Cristalografía por Rayos X , Homoserina Deshidrogenasa/genética , Cinética , Lisina/genética , Lisina/metabolismo , Modelos Moleculares , Proteínas Mutantes/genética , Mutación/genética , Unión Proteica , Conformación Proteica
9.
Future Microbiol ; : 1-14, 2024 Sep 13.
Artículo en Inglés | MEDLINE | ID: mdl-39268668

RESUMEN

Aim: To search for potential inhibitors to homoserine dehydrogenase (HSD) in Paracoccidioides brasiliensis the causative agent of paracoccidioidomycosis, an infection with a high mortality rate in Brazil.Materials & methods: The enzyme was modeled and used in the virtual screening of the compounds. The library was first screened by the Autodock, in which 66 molecules were better ranked than substrate, and then, also evaluated by the Molegro and Gold programs.Results: The HS23 and HS87 molecules were selected in common by the three programs, and ADME/Tox evaluation indicates they are not toxic. The molecular dynamics of PbHSD bonded to ligands showed stable complexes until 50 ns. To validate the results, compounds were purchased for assays of minimum inhibitory concentration (MIC), minimum fungicidal concentration (MFC), synergic profile with Amphotericin B (AmB) and cytotoxicity. The two molecules presented MIC of 32 µg/ml and MFC of 64 µg/ml against the P. brasiliensis (strain Pb18). They also showed synergistic activity with AmB and a lack of toxicity against Hela and Vero cell lines.Conclusion: These results suggest that the HS23 and HS87 are promising candidates as PbHSD inhibitors and may be used as hits for the development of new drugs against paracoccidioidomycosis.


[Box: see text].

10.
Artículo en Inglés | MEDLINE | ID: mdl-24192352

RESUMEN

Staphylococcus aureus is a Gram-positive nosocomial pathogen. The prevalence of multidrug-resistant S. aureus strains in both hospital and community settings makes it imperative to characterize new drug targets to combat S. aureus infections. In this context, enzymes involved in cell-wall maintenance and essential amino-acid biosynthesis are significant drug targets. Homoserine dehydrogenase (HSD) is an oxidoreductase that is involved in the reversible conversion of L-aspartate semialdehyde to L-homoserine in a dinucleotide cofactor-dependent reduction reaction. HSD is thus a crucial intermediate enzyme linked to the biosynthesis of several essential amino acids such as lysine, methionine, isoleucine and threonine.


Asunto(s)
Proteínas Bacterianas/química , Homoserina Deshidrogenasa/química , Staphylococcus aureus/enzimología , Proteínas Bacterianas/aislamiento & purificación , Cristalización , Homoserina Deshidrogenasa/aislamiento & purificación , Concentración de Iones de Hidrógeno , Temperatura , Difracción de Rayos X
11.
Biochimie ; 211: 87-95, 2023 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-36934778

RESUMEN

The enzyme Homoserine dehydrogenase from Paracoccidioides brasiliensis (PbHSD), an interesting enzyme in the search for new antifungal drugs against paracoccidioidomycosis, was expressed by E. coli. Thirty milligrams of PbHSD with 94% of purity were obtained per liter of culture medium. The analysis by CD spectroscopy indicates a composition of 45.5 ± 7.3% of α-helices and 10.5 ± 7.0% ß-strands. Gel filtration chromatography indicates a homodimer as biological unity. Fluorescence emission spectroscopy has shown stability of PbHSD in the presence of urea until Cm of 4.13 ± 0.21 M, and a broad pH range in which there is no conformational change. The protein analysis by differential scanning calorimetry indicates high stability at room temperature, but low stability at high temperatures, suffering irreversible denaturation, with Tm = 58.65 ± 0.87 °C. Kinetic studies of PbHSD by molecular absorption spectroscopy in UV/Vis have shown an optimum pH between 9.35 and 9.50, with Michaelian behavior, presenting KM of 224 ± 15 µM and specific activity at optimum pH of 2.10 ± 0.07 µmol/min/mg for homoserine. Therefore, protein expression and purification were efficient, and the structural characterization has shown that PbHSD presents native conformation with enzymatic activity in kinetic assays.


Asunto(s)
Paracoccidioides , Paracoccidioides/genética , Paracoccidioides/metabolismo , Homoserina Deshidrogenasa/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Cinética , Espectrometría de Fluorescencia
12.
Front Bioeng Biotechnol ; 11: 1336215, 2023.
Artículo en Inglés | MEDLINE | ID: mdl-38234301

RESUMEN

Allosteric regulation by pathway products plays a vital role in amino acid metabolism. Homoserine dehydrogenase (HSD), the key enzyme for the biosynthesis of various aspartate family amino acids, is subject to feedback inhibition by l-threonine and l-isoleucine. The desensitized mutants with the potential for amino acid production remain limited. Herein, a semi-rational approach was proposed to relieve the feedback inhibition. HSD from Corynebacterium glutamicum (CgHSD) was first characterized as a homotetramer, and nine conservative sites at the tetramer interface were selected for saturation mutagenesis by structural simulations and sequence analysis. Then, we established a high-throughput screening (HTS) method based on resistance to l-threonine analog and successfully acquired two dominant mutants (I397V and A384D). Compared with the best-ever reported desensitized mutant G378E, both new mutants qualified the engineered strains with higher production of CgHSD-dependent amino acids. The mutant and wild-type enzymes were purified and assessed in the presence or absence of inhibitors. Both purified mutants maintained >90% activity with 10 mM l-threonine or 25 mM l-isoleucine. Moreover, they showed >50% higher specific activities than G378E without inhibitors. This work provides two competitive alternatives for constructing cell factories of CgHSD-related amino acids and derivatives. Moreover, the proposed approach can be applied to engineering other allosteric enzymes in the amino acid synthesis pathway.

13.
J Mol Model ; 28(11): 374, 2022 Nov 03.
Artículo en Inglés | MEDLINE | ID: mdl-36323986

RESUMEN

Paracoccidioidomycosis is a systemic mycosis endemic in Latin America, and one of the etiological agents of the disease is Paracoccidioides brasiliensis. Currently, available treatments present adversities, such as duration, side effects, and drug interactions. In search of new therapy possibilities, this study evaluates drugs approved for use against the homoserine dehydrogenase enzyme, by an in silico approach, which performs an important biosynthesis phase for the fungus and is not present in the human body. The three-dimensional structure of the homoserine dehydrogenase enzyme from Paracoccidioides brasiliensis was obtained by homology modeling. The model was validated, and simulations were performed for virtual screening of molecules of drugs approved from the Drugs-libs database by the MTiOpenScreen web server. Molecular dynamics in three replicas were used for four drugs with better results, and in two more molecules as a control, the HS9 with inhibition against enzyme and HON which shows inhibition against mold structure. Based on the results of molecular dynamics and the comparison of binding free energy, the drug that obtained the best result was Bemcentinib. In comparison with the controls, it presented a highly relevant affinity with - 44.63 kcal/mol, in addition to good structural stability and occupation of the active site. Therefore, Bemcentinib is a promising molecule for the inhibition of PbHSD protein (homoserine dehydrogenase of Paracoccidioides brasiliensis) and a therapeutic option to be investigated.


Asunto(s)
Paracoccidioides , Humanos , Paracoccidioides/metabolismo , Homoserina Deshidrogenasa , Reposicionamiento de Medicamentos , Antifúngicos/farmacología
14.
J Microbiol Biotechnol ; 30(12): 1905-1911, 2020 Dec 28.
Artículo en Inglés | MEDLINE | ID: mdl-33046675

RESUMEN

Homoserine dehydrogenase (HSD) catalyzes the reversible conversion of L-aspartate-4- semialdehyde to L-homoserine in the aspartate pathway for the biosynthesis of lysine, methionine, threonine, and isoleucine. HSD has attracted great attention for medical and industrial purposes due to its recognized application in the development of pesticides and is being utilized in the large scale production of L-lysine. In this study, HSD from Bacillus subtilis (BsHSD) was overexpressed in Escherichia coli and purified to homogeneity for biochemical characterization. We examined the enzymatic activity of BsHSD for L-homoserine oxidation and found that BsHSD exclusively prefers NADP+ to NAD+ and that its activity was maximal at pH 9.0 and in the presence of 0.4 M NaCl. By kinetic analysis, Km values for L-homoserine and NADP+ were found to be 35.08 ± 2.91 mM and 0.39 ± 0.05 mM, respectively, and the Vmax values were 2.72 ± 0.06 µmol/min-1 mg-1 and 2.79 ± 0.11 µmol/min-1 mg-1, respectively. The apparent molecular mass determined with size-exclusion chromatography indicated that BsHSD forms a tetramer, in contrast to the previously reported dimeric HSDs from other organisms. This novel oligomeric assembly can be attributed to the additional C-terminal ACT domain of BsHSD. Thermal denaturation monitoring by circular dichroism spectroscopy was used to determine its melting temperature, which was 54.8°C. The molecular and biochemical features of BsHSD revealed in this study may lay the foundation for future studies on amino acid metabolism and its application for industrial and medical purposes.


Asunto(s)
Bacillus subtilis/enzimología , Homoserina Deshidrogenasa/química , Homoserina Deshidrogenasa/metabolismo , Ácido Aspártico/análogos & derivados , Ácido Aspártico/metabolismo , Bacillus subtilis/genética , Coenzimas , Estabilidad de Enzimas , Homoserina , Homoserina Deshidrogenasa/genética , Cinética , Modelos Moleculares , Conformación Proteica
15.
Future Microbiol ; 14: 235-245, 2019 02.
Artículo en Inglés | MEDLINE | ID: mdl-30663901

RESUMEN

AIM: Novel 4-methoxy-naphthalene derivatives were synthesized based on hits structures in order to evaluate the antifungal activity against Paracoccidioides spp. METHODS: Antifungal activity of compounds was evaluated against P. brasiliensis and most promising compounds 2 and 3 were tested against eight clinically important fungal species. RESULTS: Compound 3 was the more active compound with MIC 8 to 32 µg.ml-1 for Paracoccidioides spp without toxicity monkey kidney and murine macrophagecells. Carbohydrazide 3 showed good synergistic antifungal activity with amphotericin B against P. brasiliensis specie. Titration assay of carbohydrazide 3 with PbHSD enzyme demonstrates the binding ligand-protein. Molecular dynamics simulations show that ligand 3 let the PbHSD protein more stable. CONCLUSION: New carbohydrazide 3 is an attractive lead for drug development to treat paracoccidioidomycoses.


Asunto(s)
Antifúngicos/farmacología , Naftalenos/farmacología , Paracoccidioides/efectos de los fármacos , Paracoccidioidomicosis/tratamiento farmacológico , Anfotericina B/farmacología , Animales , Antifúngicos/uso terapéutico , Chlorocebus aethiops , Combinación de Medicamentos , Sinergismo Farmacológico , Homoserina Deshidrogenasa/metabolismo , Hidrazinas/farmacología , Macrófagos/efectos de los fármacos , Ratones , Pruebas de Sensibilidad Microbiana , Simulación de Dinámica Molecular , Naftalenos/síntesis química , Naftalenos/uso terapéutico , Paracoccidioides/patogenicidad , Estabilidad Proteica , Células Vero/efectos de los fármacos
16.
J Mol Model ; 25(11): 325, 2019 Oct 25.
Artículo en Inglés | MEDLINE | ID: mdl-31654136

RESUMEN

Paracoccidioidomycosis (PCM) is a systemic mycosis caused by fungi of the genus Paracoccidioides spp., which mainly affects workers in rural regions of Latin America. Although the antifungal agents currently available for the treatment of PCM are effective in controlling the disease, many months are needed for healing, making the side effects and drug interactions relevant. In addition, conventional treatments are not able to control the sequelae left by PCM, even after the cure, justifying the search for new therapeutic options against PCM. In this context, the enzyme homoserine dehydrogenase of P. brasiliensis (PbHSD) was used to screen a library of natural products from the Zinc database using three different docking programs, i.e. Autodock, Molegro, and CLC Drugdiscovery Workbench. Three molecules (Zinc codes 2123137, 15967722, and 20611644) were better ranked than the homoserine substrate (HSE) and were used for in vitro trials of the minimum inhibitory concentration (MIC) and minimal fungicidal concentration (MCF). All three molecules presented a fungicidal profile with MICs/MCFs of 8, 32, and 128 µg mL-1, respectively. The two most promising molecules presented satisfactory results with wide therapeutic ranges in the cytotoxicity assays. Molecular dynamics simulations of PbHSD indicated that the ligands remained bound to the protein by a common mechanism throughout the simulation. The molecule with the lowest MIC value presented the highest number of contacts with the protein. The results presented in this work suggest that the molecule Zinc2123137 may be considered as a hit in the development of new therapeutic options for PCM.


Asunto(s)
Antifúngicos/farmacología , Homoserina Deshidrogenasa/antagonistas & inhibidores , Paracoccidioides/metabolismo , Animales , Línea Celular , Línea Celular Tumoral , Chlorocebus aethiops , Células HeLa , Humanos , Ligandos , Pruebas de Sensibilidad Microbiana/métodos , Simulación de Dinámica Molecular , Células Vero
17.
J Microbiol Immunol Infect ; 50(6): 863-871, 2017 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-27089825

RESUMEN

BACKGROUND/PURPOSE: Candida albicans is a common fungal pathogen in humans. In healthy individuals, C. albicans represents a harmless commensal organism, but infections can be life threatening in immunocompromised patients. The complete genome sequence of C. albicans is extremely useful for identifying genes that may be potential drug targets and important for pathogenic virulence. However, there are still many uncharacterized genes in the Candida genome database. In this study, we investigated C. albicans Hom6, the functions of which remain undetermined experimentally. METHODS: HOM6-deleted and HOM6-reintegrated mutant strains were constructed. The mutant strains were compared with wild-type in their growth in various media and enzyme activity. Effects of HOM6 deletion on translation were further investigated by cell susceptibility to hygromycin B or cycloheximide, as well as by polysome profiling, and cell adhesion to polystyrene was also determined. RESULTS: C. albicans Hom6 exhibits homoserine dehydrogenase activity and is involved in the biosynthesis of methionine and threonine. HOM6 deletion caused translational arrest in cells grown under amino acid starvation conditions. Additionally, Hom6 protein was found in both cytosolic and cell-wall fractions of cultured cells. Furthermore, HOM6 deletion reduced C. albicans cell adhesion to polystyrene, which is a common plastic used in many medical devices. CONCLUSION: Given that there is no Hom6 homologue in mammalian cells, our results provided an important foundation for future development of new antifungal drugs.


Asunto(s)
Candida albicans/enzimología , Candida albicans/genética , Proteínas Fúngicas/biosíntesis , Homoserina Deshidrogenasa/genética , Secuencia de Aminoácidos , Antifúngicos/farmacología , Adhesión Celular , Proteínas Fúngicas/genética , Eliminación de Gen , Genoma Fúngico , Homoserina Deshidrogenasa/metabolismo , Humanos , Metionina/biosíntesis , Poliestirenos , Alineación de Secuencia , Treonina/biosíntesis
18.
ACS Synth Biol ; 4(2): 126-31, 2015 Feb 20.
Artículo en Inglés | MEDLINE | ID: mdl-24344690

RESUMEN

Allosteric proteins, which can sense different signals, are interesting biological parts for synthetic biology. In particular, the design of an artificial allosteric enzyme to sense an unnatural signal is both challenging and highly desired, for example, for a precise and dynamical control of fluxes of growth-essential but byproduct pathways in metabolic engineering of industrial microorganisms. In this work, we used homoserine dehydrogenase (HSDH) of Corynebacterium glutamicum, which is naturally allosterically regulated by threonine and isoleucine, as an example to demonstrate the feasibility of reengineering an allosteric enzyme to respond to an unnatural inhibitor L-lysine. For this purpose, the natural threonine binding sites of HSD were first predicted and verified by mutagenesis experiments. The threonine binding sites were then engineered to a lysine binding pocket. The reengineered HSD only responds to lysine inhibition but not to threonine. This is a significant step toward the construction of artificial molecular circuits for dynamic control of growth-essential byproduct formation pathway for lysine biosynthesis.


Asunto(s)
Inhibidores Enzimáticos/química , Homoserina Deshidrogenasa/antagonistas & inhibidores , Lisina/química , Regulación Alostérica , Sustitución de Aminoácidos , Sitios de Unión , Corynebacterium/enzimología , Diseño de Fármacos , Inhibidores Enzimáticos/metabolismo , Homoserina Deshidrogenasa/genética , Homoserina Deshidrogenasa/metabolismo , Isoleucina/química , Isoleucina/metabolismo , Cinética , Lisina/metabolismo , Simulación de Dinámica Molecular , Unión Proteica , Ingeniería de Proteínas , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Treonina/química , Treonina/metabolismo
19.
Plant Physiol Biochem ; 87: 73-83, 2015 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-25559386

RESUMEN

The grain proteins of barley are deficient in lysine and threonine due to their low concentrations in the major storage protein class, the hordeins, especially in the C-hordein subgroup. Previously produced antisense C-hordein transgenic barley lines have an improved amino acid composition, with increased lysine, methionine and threonine contents. The objective of the study was to investigate the possible changes in the regulation of key enzymes of the aspartate metabolic pathway and the contents of aspartate-derived amino acids in the nontransgenic line (Hordeum vulgare L. cv. Golden Promise) and five antisense C-hordein transgenic barley lines. Considering the amounts of soluble and protein-bound aspartate-derived amino acids together with the analysis of key enzymes of aspartate metabolic pathway, we suggest that the C-hordein suppression did not only alter the metabolism of at least one aspartate-derived amino acid (threonine), but major changes were also detected in the metabolism of lysine and methionine. Modifications in the activities and regulation of aspartate kinase, dihydrodipicolinate synthase and homoserine dehydrogenase were observed in most transgenic lines. Furthermore the activities of lysine α-ketoglutarate reductase and saccharopine dehydrogenase were also altered, although the extent varied among the transgenic lines.


Asunto(s)
ADN sin Sentido , Glútenes , Hordeum/metabolismo , Lisina/metabolismo , Plantas Modificadas Genéticamente/metabolismo , Hordeum/genética , Lisina/genética , Plantas Modificadas Genéticamente/genética
20.
Biochem Biophys Rep ; 3: 14-17, 2015 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-29124164

RESUMEN

Homoserine dehydrogenase (HSD; 305 amino acid residues) catalyzes an NAD(P)-dependent reversible reaction between l-homoserine and aspartate 4-semialdehyde and is involved in the aspartate pathway. HSD from the hyperthermophilic archaeon Sulfolobus tokodaii was markedly activated (2.5-fold) by the addition of 0.8 mM dithiothreitol. The crystal structure of the homodimer indicated that the activation was caused by cleavage of the disulfide bond formed between two cysteine residues (C303) in the C-terminal regions of the two subunits.

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