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1.
Bioorg Chem ; 147: 107382, 2024 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-38640720

RESUMEN

Amino acid transferase is a family of enzymes used to catalyze and separate chiral amino acids. However, due to the low efficiency, by-products and reverse reactions occur in cascade reactions. Therefore, in the research, phenylglycine aminotransferase and aspartate aminotransferase were self-assembled in vitro by leucine zipper. The self-assembled enzyme system with d-phenylglycine and α-ketoglutarate as substrates were used for the chiral transformation reaction. By studying the enzyme combination, kinetic reaction stability and catalytic efficiency, it was found that the self-assembled enzyme showed improved stability and better affinity to the substrate than the control and achieved only ee value of 17.86% for the control at the substrate ratio was 1:2. In contrast, the self-assembled enzyme basically catalyzed the complete conversion of d-Phg to l-Phg, with the ee value as 99%. These results demonstrated the feasibility of the leucine zipper and the conversion of d-phenylglycine to the l-type by fusion enzyme.


Asunto(s)
Glicina , Leucina Zippers , Transaminasas , Glicina/química , Glicina/análogos & derivados , Transaminasas/metabolismo , Transaminasas/química , Estereoisomerismo , Estructura Molecular , Cinética , Aspartato Aminotransferasas/metabolismo , Aspartato Aminotransferasas/química , Biocatálisis
2.
J Comput Chem ; 41(32): 2684-2694, 2020 12 15.
Artículo en Inglés | MEDLINE | ID: mdl-32932551

RESUMEN

Transaminase is a key enzyme for amino acid metabolism, which reversibly catalyzes the transamination reaction with the help of PLP (pyridoxal 5' -phosphate) as its cofactor. Here we have investigated the mechanism and free energy landscape of the transamination reaction involving the aspartate transaminase (AspTase) enzyme and aspartate-PLP (Asp-PLP) complex using QM/MM simulation and metadynamics methods. The reaction is found to follow a stepwise mechanism where the active site residue Lys258 acts as a base to shuttle a proton from α-carbon (CA) to imine carbon (C4A) of the PLP-Asp Schiff base. In the first step, the Lys258 abstracts the CA proton of the substrate leading to the formation of a carbanionic intermediate which is followed by the reprotonation of the Asp-PLP Schiff base at C4A atom by Lys258. It is found that the free energy barrier for the proton abstraction by Lys258 and that for the reprotonation are 17.85 and 3.57 kcal/mol, respectively. The carbanionic intermediate is 7.14 kcal/mol higher in energy than the reactant. Hence, the first step acts as the rate limiting step. The present calculations also show that the Lys258 residue undergoes a conformational change after the first step of transamination reaction and becomes proximal to C4A atom of the Asp-PLP Schiff base to favor the second step. The active site residues Tyr70* and Gly38 anchor the Lys258 in proper position and orientation during the first step of the reaction and stabilize the positive charge over Lys258 generated at the intermediate step.


Asunto(s)
Aspartato Aminotransferasas/química , Ácido Aspártico/química , Fosfato de Piridoxal/química , Secuencia de Aminoácidos , Catálisis , Dominio Catalítico , Iminas/química , Modelos Moleculares , Conformación Proteica , Protones , Bases de Schiff/química , Termodinámica
3.
Protein Expr Purif ; 175: 105709, 2020 11.
Artículo en Inglés | MEDLINE | ID: mdl-32738436

RESUMEN

Aspartate aminotransferase catalyzes the transfer of an amino group from l-aspartate to α-oxoglutarate. A gene encoding aspartate aminotransferase, ASTGt, from Geobacillus thermopakistaniensis was cloned and expressed in Escherichia coli. The purified recombinant ASTGt exhibited highest activity at 65 °C and pH 7.0. The activity was dependent on pyridoxal phosphate but not on any metal ions. Stoichiometry of purified ASTGt demonstrated that 0.1 pyridoxal phosphate was attached per subunit of the enzyme. Determination of molecular weight by gel filtration chromatography indicated that ASTGt existed in a dimeric form in solution. Thermostability experiments showed no significant change in activity even after 16 h incubation at 65 °C. ASTGt exhibited apparent Vmax and Km values of 120 µmol min-1 mg-1 and 1.5 mM, respectively, against l-aspartate. Substrate specificity experiments indicated the highest relative activity against aspartate (100%) followed by tyrosine (27%) and proline (16%). To the best of our knowledge, this is the first report on cloning and characterization of an AST from genus Geobacillus.


Asunto(s)
Aspartato Aminotransferasas , Proteínas Bacterianas , Expresión Génica , Geobacillus/genética , Aspartato Aminotransferasas/biosíntesis , Aspartato Aminotransferasas/química , Aspartato Aminotransferasas/genética , Aspartato Aminotransferasas/aislamiento & purificación , Proteínas Bacterianas/biosíntesis , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Proteínas Bacterianas/aislamiento & purificación , Estabilidad de Enzimas , Geobacillus/enzimología , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/aislamiento & purificación
4.
Molecules ; 25(20)2020 Oct 20.
Artículo en Inglés | MEDLINE | ID: mdl-33092276

RESUMEN

The insecticidal activity is the result of a series of complex interactions between toxic substances as ligands and insect's enzymes as targets. Actually, synthetic insecticides used in pest control programs are harmful to the environment and may affect non-target organisms; thus, the use of natural products as pest control agents can be very attractive. In the present work, the toxic effect of aniseed (Pimpinella anisum L.) essential oil (EO) and its nanoemulsion (NE) against the red flour beetle Tribolium castaneum, has been evaluated. To assess the EO mode of action, the impact of sub-lethal concentrations of aniseed EO and NE was evaluated on enzymatic and macromolecular parameters of the beetles, including aspartate aminotransferase (AST), alanine aminotransferase (ALT), total protein, total lipids and glucose. Finally, a molecular docking study was conducted to predict the mode of action of the major EO and NE components namely E-anethole, Limonene, alpha-himalachalene, trans-Verbenol and Linalool at binding site of the enzymes AST and ALT. Herein, the binding location of the main compounds in both proteins are discussed suggesting the possible interactions between the considered enzymes and ligands. The obtained results open new horizons to understand the evolution and response of insect-plant compounds interactions and their effect predicted at the molecular levels and side effects of both animal and human.


Asunto(s)
Monoterpenos/química , Aceites Volátiles/química , Pimpinella/química , Tribolium/efectos de los fármacos , Alanina Transaminasa/antagonistas & inhibidores , Alanina Transaminasa/química , Animales , Aspartato Aminotransferasas/antagonistas & inhibidores , Aspartato Aminotransferasas/química , Emulsiones/química , Emulsiones/farmacología , Interacciones de Hierba-Droga , Humanos , Simulación del Acoplamiento Molecular , Monoterpenos/farmacología , Nanoestructuras/química , Aceites Volátiles/farmacología
5.
Chem Res Toxicol ; 32(8): 1491-1503, 2019 08 19.
Artículo en Inglés | MEDLINE | ID: mdl-31251591

RESUMEN

Quantum dots (QDs) are engineered nanoparticles (NPs) of semiconductor structure that possess unique optical and electronic properties and are widely used in biomedical applications; however, their risks are not entirely understood. This study investigated the tissue distribution and toxic effects of cadmium telluride quantum dots (CdTe-QDs) in male BALB/c mice for up to 1 week after single-dose intravenous injections. CdTe-QDs were detected in the blood, lung, heart, liver, spleen, kidney, testis and brain. Most CdTe-QDs accumulated in the liver, followed by the spleen and kidney. At high doses, exposure to CdTe-QDs resulted in mild dehydration, lethargy, ruffled fur, hunched posture, and body weight loss. Histological analysis of the tissues, upon highest dose exposures, revealed hepatic hemorrhage and necrotic areas in the spleen. The sera of mice treated with high doses of CdTe-QDs showed significant increases in alanine aminotransferase (ALT), aspartate aminotransferase (AST), and total bilirubin levels, as well as a reduction in albumin. CdTe-QD exposure also led to a reduced number of platelets and elevated total white blood cell counts, including monocytes and neutrophils, serum amyloid A, and several pro-inflammatory cytokines. These results demonstrated that the liver is the main target of CdTe-QDs and that exposure to CdTe-QDs leads to hepatic and splenic injury, as well as systemic effects, in mice. By contrast, cadmium chloride (CdCl2), at an equivalent concentration of cadmium, appeared to have a different pharmacokinetic pattern from that of CdTe-QDs, having minimal effects on the aforementioned parameters, suggesting that cadmium alone cannot fully explain the toxicity of CdTe-QDs.


Asunto(s)
Compuestos de Cadmio/farmacocinética , Nanopartículas/química , Puntos Cuánticos/química , Telurio/farmacocinética , Alanina Transaminasa/química , Alanina Transaminasa/metabolismo , Albúminas/química , Albúminas/metabolismo , Animales , Aspartato Aminotransferasas/química , Aspartato Aminotransferasas/metabolismo , Bilirrubina/sangre , Cloruro de Cadmio/administración & dosificación , Cloruro de Cadmio/metabolismo , Cloruro de Cadmio/farmacocinética , Compuestos de Cadmio/administración & dosificación , Compuestos de Cadmio/metabolismo , Inyecciones Intravenosas , Masculino , Ratones , Ratones Endogámicos BALB C , Nanopartículas/metabolismo , Puntos Cuánticos/metabolismo , Telurio/administración & dosificación , Telurio/metabolismo , Distribución Tisular
6.
Cell Commun Signal ; 17(1): 111, 2019 08 30.
Artículo en Inglés | MEDLINE | ID: mdl-31470862

RESUMEN

BACKGROUND: Distinctive from their normal counterparts, cancer cells exhibit unique metabolic dependencies on glutamine to fuel anabolic processes. Specifically, pancreatic ductal adenocarcinoma (PDAC) cells rely on an unconventional metabolic pathway catalyzed by aspartate transaminase 1 (GOT1) to rewire glutamine metabolism and support nicotinamide adenine dinucleotide phosphate (NADPH) production. Thus, the important role of GOT1 in energy metabolism and Reactive Oxygen Species (ROS) balance demonstrates that targeting GOT1 may serve as an important therapeutic target in PDAC. METHODS: To assay the binding affinity between Aspulvinone O (AO) and GOT1 proteins, the virtual docking, microscale thermophoresis (MST), cellular thermal shift assay (CETSA) and drug affinity responsive target stability (DARTS) methods were employed. GOT1 was silenced in several PDAC cell lines. The level of OCR and ECR were assayed by seahorse. To evaluate the in vivo anti-tumor efficacy of AO, the xenograft model was built in CB17/scid mouse. RESULTS: Screening of an in-house natural compound library identified the AO as a novel inhibitor of GOT1 and repressed glutamine metabolism, which sensitizes PDAC cells to oxidative stress and suppresses cell proliferation. Virtual docking analysis suggested that AO could bind to the active site of GOT1 and form obvious hydrophobic interaction with Trp141 together with hydrogen bonds with Thr110 and Ser256. Further in vitro validation, including MST, CETSA and DARTS, further demonstrated the specific combining capacity of AO. We also show that the selective inhibition of GOT1 by AO significantly reduces proliferation of PDAC in vitro and in vivo. CONCLUSIONS: Taken together, our findings identify AO as a potent bioactive inhibitor of GOT1 and a novel anti-tumour agent for PDAC therapy.


Asunto(s)
Adenocarcinoma/patología , Antineoplásicos/farmacología , Aspartato Aminotransferasas/antagonistas & inhibidores , Inhibidores Enzimáticos/farmacología , Furanos/farmacología , Glutamina/metabolismo , Neoplasias Pancreáticas/patología , Antineoplásicos/metabolismo , Aspartato Aminotransferasas/química , Aspartato Aminotransferasas/metabolismo , Línea Celular Tumoral , Proliferación Celular/efectos de los fármacos , Inhibidores Enzimáticos/metabolismo , Humanos , Simulación del Acoplamiento Molecular , Conformación Proteica , Especies Reactivas de Oxígeno/metabolismo
7.
Clin Lab ; 65(8)2019 Aug 01.
Artículo en Inglés | MEDLINE | ID: mdl-31414761

RESUMEN

BACKGROUND: Persistent isolated elevation of aspartate aminotransferase (AST) is a rare observation and might lead to unnecessary laboratory testing and invasive procedures, if the possibility of macro-AST is not considered. METHODS: We report the case of a healthy 28-year-old female patient with persistent isolated elevation of AST. In order to confirm the suspected diagnosis of macro-AST, polyethylene glycol (PEG) precipitation and repeated measurements of enzyme activity after refrigeration at 2 - 8°C were performed. RESULTS: PEG precipitation confirmed the presence of macro-AST, while repeated measurements after refrigeration did not show any relevant decrease in enzyme activity. CONCLUSIONS: Especially in clinically asymptomatic patients, macro-AST must be considered as a cause of persistent isolated elevations in AST activity to avoid costly and potentially harmful medical tests or procedures. PEG precipitation is a feasible and cost-effective way to establish the diagnosis, while repeated measurement of enzyme activity after refrigeration potentially leads to wrong conclusions.


Asunto(s)
Aspartato Aminotransferasas/química , Aspartato Aminotransferasas/metabolismo , Frío , Estabilidad de Enzimas , Polietilenglicoles/química , Adulto , Aspartato Aminotransferasas/sangre , Pruebas de Enzimas/métodos , Femenino , Humanos , Peso Molecular , Factores de Tiempo
8.
J Clin Lab Anal ; 33(2): e22690, 2019 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-30320474

RESUMEN

BACKGROUND: A rare and benign cause of isolated aspartate aminotransferase (AST) increase is due to the presence of macro aspartate aminotransferase (macro-AST). Macro-AST is not usually considered by clinicians, leading to a large number of unnecessary and even invasive tests before diagnosed. Most commonly used laboratory methods for detection of macro-enzymes are precipitation with polyethylene glycol (PEG), ultracentrifugation and gel filtration chromatography (GFC). METHODS: We report a case of an asymptomatic patient with persistent isolated AST elevation. PEG precipitation and an alternative method based on the low stability of this macro-enzyme were performed on the patient serum. RESULTS: Macro-AST was early detected by the laboratory observing a significant decrease in AST concentrations when the serum is stored at 4ºC. CONCLUSIONS: Macro-AST detection based in this method can be very useful as screening, especially in those laboratories where other technologies are not available. Macro-AST must be considered as cause of unexplained isolated AST elevations before prior investigations to avoid the consequent cost and potential harm to the patient. In our case, early detection of macro-AST with this method avoided unnecessary treatment and invasive test such as liver biopsy.


Asunto(s)
Aspartato Aminotransferasas/sangre , Análisis Químico de la Sangre/métodos , Análisis Químico de la Sangre/normas , Aspartato Aminotransferasas/química , Aspartato Aminotransferasas/metabolismo , Enfermedades Asintomáticas , Diagnóstico Diferencial , Estabilidad de Enzimas , Femenino , Humanos , Persona de Mediana Edad , Polietilenglicoles , Temperatura
9.
J Biol Chem ; 292(14): 5970-5980, 2017 04 07.
Artículo en Inglés | MEDLINE | ID: mdl-28232482

RESUMEN

Pyridoxal 5'-phosphate (PLP) is a fundamental, multifunctional enzyme cofactor used to catalyze a wide variety of chemical reactions involved in amino acid metabolism. PLP-dependent enzymes optimize specific chemical reactions by modulating the electronic states of PLP through distinct active site environments. In aspartate aminotransferase (AAT), an extended hydrogen bond network is coupled to the pyridinyl nitrogen of the PLP, influencing the electrophilicity of the cofactor. This network, which involves residues Asp-222, His-143, Thr-139, His-189, and structural waters, is located at the edge of PLP opposite the reactive Schiff base. We demonstrate that this hydrogen bond network directly influences the protonation state of the pyridine nitrogen of PLP, which affects the rates of catalysis. We analyzed perturbations caused by single- and double-mutant variants using steady-state kinetics, high resolution X-ray crystallography, and quantum chemical calculations. Protonation of the pyridinyl nitrogen to form a pyridinium cation induces electronic delocalization in the PLP, which correlates with the enhancement in catalytic rate in AAT. Thus, PLP activation is controlled by the proximity of the pyridinyl nitrogen to the hydrogen bond microenvironment. Quantum chemical calculations indicate that Asp-222, which is directly coupled to the pyridinyl nitrogen, increases the pKa of the pyridine nitrogen and stabilizes the pyridinium cation. His-143 and His-189 also increase the pKa of the pyridine nitrogen but, more significantly, influence the position of the proton that resides between Asp-222 and the pyridinyl nitrogen. These findings indicate that the second shell residues directly enhance the rate of catalysis in AAT.


Asunto(s)
Aspartato Aminotransferasas/química , Modelos Moleculares , Fosfato de Piridoxal/química , Animales , Aspartato Aminotransferasas/genética , Aspartato Aminotransferasas/metabolismo , Cristalografía por Rayos X , Enlace de Hidrógeno , Dominios Proteicos , Fosfato de Piridoxal/genética , Fosfato de Piridoxal/metabolismo , Sus scrofa
10.
J Theor Biol ; 457: 51-56, 2018 11 14.
Artículo en Inglés | MEDLINE | ID: mdl-30102888

RESUMEN

Understanding the interaction of an enzyme with its substrate is important for the research of protein function. However, there is still no satisfactory explanation for protein folding, in spite of the continuous efforts by many excellent researchers. We present a novel approach for analysing enzyme-substrate complexes. Previously, we showed how four exon-junctions, in a domain of enzyme and carrier protein structures, form a plane around their respective ligands. Here, we report the formation of two planes by two combinations of four exon-junctions within the large enzyme, aspartate aminotransferase. Almost all the ligand atoms are located within one plane, while the other plane contains most linker-residue atoms of the coenzyme, suggesting that the former and latter planes serve as the enzyme reaction and support areas, respectively. Simulation results revealed that two-plane formation is possible in the enzyme with four random positions; however, the relationship between the coenzyme ligating substrate and the plane is significant and is biologically important. We describe the formation of such planes around the ligand, including the ligating residue for the coenzyme with no substrate.


Asunto(s)
Aspartato Aminotransferasas/química , Coenzimas/química , Exones , Modelos Moleculares , Dominio Catalítico
11.
J Zoo Wildl Med ; 49(3): 528-534, 2018 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-30212312

RESUMEN

The use of invertebrate hemolymph chemistry analysis has the potential to become a major diagnostic tool. The goal of this study was to generate statistically sound hemolymph reference ranges from healthy tarantulas. Hemolymph was drawn from wild caught, acclimatized, and apparently healthy female Chilean rose tarantulas Grammostola rosea (Walkenaer, 1837) ( n = 43) using a modified technique. Hemolymph samples were separately analyzed using the Avian-Reptilian Profile Plus reagent rotor for VetScan® for the following chemistries: aspartate aminotransferase, bile acids, creatine kinase, uric acid, glucose, total calcium, phosphorus, total protein, albumin, potassium, and sodium. With this method the authors were able to establish statistically sound reference ranges for aspartate aminotransferase, creatine kinase, glucose, phosphorus, and total protein. Further in situ studies will determine the practical usability of these values in the evaluation of tarantula health.


Asunto(s)
Hemolinfa/química , Arañas/fisiología , Albúminas/química , Animales , Aspartato Aminotransferasas/química , Aspartato Aminotransferasas/metabolismo , Calcio/química , Creatina Quinasa , Femenino , Ácido Glucárico/química , Fósforo , Potasio/química , Proteínas/química , Valores de Referencia , Sodio/química , Ácido Úrico/química
12.
Pol J Vet Sci ; 21(3): 445-449, 2018 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-30468332

RESUMEN

The aim of the study was to establish normal ranges for chosen biochemical parameters of haemolymph of snails (Gasropoda: Mollusca), in the light of the use of these animals as experi- mental models in various types of studies. The study was conducted on 100 specimens of Cornu aspersum maxima (CAM) and 100 specimens of Cepaea nemoralis (CN). The haemolymph col- lected from the animals was analysed using colorimetry to assay aspartate transaminase (AST) activity, alanine transaminase (ALT) activity, amylase activity and the concentrations of urea and triglycerides. In the further part of the study, the influence of administering doxycycline with feed on the change of AST and ALT activity in snail haemolymph has been studied. The normal values established for CAM are as follow: AST activity: 26-38 u/l, ALT activity: 0-11 u/l, amylase activity 9-16 u/l, concentration of urea: 3-6 mg/dl, concentration of triglycerides: 16-20 mg/dl. For CN, the following data have been obtained: AST activity: 30-80 u/l, ALT activity: 0-15 u/l, amylase activity 12-15 u/l, concentration of urea: 5-8 mg/dl, concentration of triglycerides: 18-24 mg/dl. It has been shown that doxycycline presents a high workload on the hepatopancreas of snails, which is reflected by a statistically significant (p ⟨ 0.05) increase of AST and ALT activity in the haemolymph of the specimens which obtained doxycycline in feed, as compared to the groups with antibiotic-free feed. The haemolymph activity of both studied parameters increased together with study time and tetracycline administration time.


Asunto(s)
Hemolinfa/fisiología , Caracoles/fisiología , Alanina Transaminasa/química , Alanina Transaminasa/metabolismo , Amilasas/química , Amilasas/metabolismo , Animales , Aspartato Aminotransferasas/química , Aspartato Aminotransferasas/metabolismo , Compuestos Epoxi , Hemolinfa/química , Valores de Referencia , Urea/química , Urea/metabolismo
13.
Biochemistry ; 56(37): 4951-4961, 2017 09 19.
Artículo en Inglés | MEDLINE | ID: mdl-28816437

RESUMEN

Potent mechanism-based inactivators can be rationally designed against pyridoxal 5'-phosphate (PLP)-dependent drug targets, such as ornithine aminotransferase (OAT) or γ-aminobutyric acid aminotransferase (GABA-AT). An important challenge, however, is the lack of selectivity toward other PLP-dependent, off-target enzymes, because of similarities in mechanisms of all PLP-dependent aminotransferase reactions. On the basis of complex crystal structures, we investigate the inactivation mechanism of OAT, a hepatocellular carcinoma target, by (1R,3S,4S)-3-amino-4-fluorocyclopentane-1-carboxylic acid (FCP), a known inactivator of GABA-AT. A crystal structure of OAT and FCP showed the formation of a ternary adduct. This adduct can be rationalized as occurring via an enamine mechanism of inactivation, similar to that reported for GABA-AT. However, the crystal structure of an off-target, PLP-dependent enzyme, aspartate aminotransferase (Asp-AT), in complex with FCP, along with the results of attempted inhibition assays, suggests that FCP is not an inactivator of Asp-AT, but rather an alternate substrate. Turnover of FCP by Asp-AT is also supported by high-resolution mass spectrometry. Amid existing difficulties in achieving selectivity of inactivation among a large number of PLP-dependent enzymes, the obtained results provide evidence that a desirable selectivity could be achieved, taking advantage of subtle structural and mechanistic differences between a drug-target enzyme and an off-target enzyme, despite their largely similar substrate binding sites and catalytic mechanisms.


Asunto(s)
4-Aminobutirato Transaminasa/antagonistas & inhibidores , Aspartato Aminotransferasas/antagonistas & inhibidores , Cicloleucina/análogos & derivados , Inhibidores Enzimáticos/farmacología , Modelos Moleculares , Ornitina-Oxo-Ácido Transaminasa/antagonistas & inhibidores , Fosfato de Piridoxal/metabolismo , 4-Aminobutirato Transaminasa/química , 4-Aminobutirato Transaminasa/metabolismo , Aspartato Aminotransferasas/química , Aspartato Aminotransferasas/genética , Aspartato Aminotransferasas/metabolismo , Sitios de Unión , Dominio Catalítico , Cristalografía por Rayos X , Cicloleucina/química , Cicloleucina/metabolismo , Cicloleucina/farmacología , Bases de Datos de Compuestos Químicos , Bases de Datos de Proteínas , Inhibidores Enzimáticos/química , Inhibidores Enzimáticos/metabolismo , Proteínas de Escherichia coli/antagonistas & inhibidores , Proteínas de Escherichia coli/química , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo , Humanos , Ligandos , Conformación Molecular , Ornitina-Oxo-Ácido Transaminasa/química , Ornitina-Oxo-Ácido Transaminasa/genética , Ornitina-Oxo-Ácido Transaminasa/metabolismo , Conformación Proteica , Fosfato de Piridoxal/química , Piridoxamina/química , Piridoxamina/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Homología Estructural de Proteína , Especificidad por Sustrato
14.
Postepy Hig Med Dosw (Online) ; 70: 219-30, 2016 Mar 16.
Artículo en Polaco | MEDLINE | ID: mdl-27117097

RESUMEN

Aspartate aminotransferase is an organ-nonspecific enzyme located in many tissues of the human body where it catalyzes reversible reaction of transamination. There are two aspartate aminotransferase isoforms--cytoplasmic (AST1) and mitochondrial (AST2), that usually occur together and interact with each other metabolically. Both isoforms are homodimers containing highly conservative regions responsible for catalytic properties of enzyme. The common feature of all aspartate aminotransfeses is Lys - 259 residue covalent binding with prosthetic group - pyridoxal phosphate. The differences in the primary structure of AST isoforms determine their physico-chemical, kinetic and immunological properties. Because of the low concentration of L-aspartate (L-Asp) in the blood, AST is the only enzyme, which supply of this amino acid as a substrate for many metabolic processes, such as urea cycle or purine and pyrimidine nucleotides in the liver, synthesis of L-arginine in the kidney and purine nucleotide cycle in the brain and the skeletal muscle. AST is also involved in D-aspartate production that regulates the metabolic activity at the auto-, para- and endocrine level. Aspartate aminotransferase is a part of the malate-aspartate shuttle in the myocardium, is involved in gluconeogenesis in the liver and kidney, glyceroneogenesis in the adipose tissue, and synthesis of neurotransmitters and neuro-glial pathway in the brain. Recently, the significant role of AST in glutaminolysis - normal metabolic pathway in tumor cells, was demonstrated. The article is devoted the role of AST, known primarily as a diagnostic liver enzyme, in metabolism of various human tissues and organs.


Asunto(s)
Aspartato Aminotransferasas/química , Isoformas de Proteínas/química , Aspartato Aminotransferasas/metabolismo , Humanos , Isoformas de Proteínas/metabolismo
16.
Arch Biochem Biophys ; 544: 119-27, 2014 Feb 15.
Artículo en Inglés | MEDLINE | ID: mdl-24121043

RESUMEN

Aspartate aminotransferase (AAT) is a prototypical pyridoxal 5'-phosphate (PLP) dependent enzyme that catalyzes the reversible interconversion of l-aspartate and α-ketoglutarate with oxalacetate and l-glutamate via a ping-pong catalytic cycle in which the pyridoxamine 5'-phosphate enzyme form is an intermediate. There is a bountiful literature on AAT that spans approximately 60years, and much fundamental mechanistic information on PLP dependent reactions has been gained from its study. Here, we review our recent work on AAT, where we again used it as a test bed for fundamental concepts in PLP chemistry. First, we discuss the role that coenzyme protonation state plays in controlling reaction specificity, then ground state destabilization via hyperconjugation in the external aldimine intermediate is examined. The third topic is light enhancement of catalysis of Cα-H deprotonation by PLP in solution and in AAT, which occurs through a triplet state of the external aldimine intermediate. Lastly, we consider recent advances in our analyses of enzyme multiple sequence alignments for the purpose of predicting mutations that are required to interconvert structurally similar but catalytically distinct enzymes, and the application of our program JANUS to the conversion of AAT into tyrosine aminotransferase.


Asunto(s)
Aspartato Aminotransferasas/metabolismo , Fosfato de Piridoxal/metabolismo , Animales , Aspartato Aminotransferasas/química , Biología Computacional , Activación Enzimática , Humanos , Modelos Moleculares , Nitrógeno/metabolismo , Fosfato de Piridoxal/química
17.
Extremophiles ; 18(3): 589-602, 2014 May.
Artículo en Inglés | MEDLINE | ID: mdl-24687296

RESUMEN

We successfully cloned a novel branched-chain amino acid aminotransferase (Ts-BcAT; EC 2.6.1.42) gene from the Thermococcus sp. CKU-1 genome and expressed it in the soluble fraction of Escherichia coli Rosetta (DE3) cells. Ts-BcAT is a homodimer with an apparent molecular mass of approximately 92 kDa. The primary structure of Ts-BcAT showed high homology with the fold-type I, subgroup I aminotransferases, but showed little homology with BcATs known to date, i.e., those of Escherichia coli and Salmonella typhimurium, which belong to the fold-type IV, subgroup III aminotransferases. The maximum enzyme activity of Ts-BcAT was detected at 95 °C, and Ts-BcAT did not lose any enzyme activity, even after incubation at 90 °C for 5 h. Ts-BcAT was active in the pH range from 4.0 to 11.0, the optimum pH was 9.5, and the enzyme was stable between pH 6 and 7. The exceptionally low pK a of the nitrogen atom in the Lys258 ε-amino group in the internal aldimine bond of Ts-BcAT was determined to be 5.52 ± 0.05. Ts-BcAT used 21 natural and unnatural amino acids as a substrate in the overall transamination reaction. L-Leucine and other aliphatic amino acids are efficient substrates, while polar amino acids except glutamate were weak substrates. Phylogenetic analysis revealed that Ts-BcAT is a novel fold-type I, subgroup I branched-chain aminotransferase.


Asunto(s)
Proteínas Arqueales/metabolismo , Aspartato Aminotransferasas/metabolismo , Thermococcus/enzimología , Secuencia de Aminoácidos , Proteínas Arqueales/química , Proteínas Arqueales/genética , Aspartato Aminotransferasas/química , Aspartato Aminotransferasas/genética , Clonación Molecular , Datos de Secuencia Molecular , Thermococcus/genética
19.
Biochim Biophys Acta ; 1824(2): 339-49, 2012 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-22138634

RESUMEN

The joint substitution of three active-site residues in Escherichia coli (L)-aspartate aminotransferase increases the ratio of l-cysteine sulfinate desulfinase to transaminase activity 10(5)-fold. This change in reaction specificity results from combining a tyrosine-shift double mutation (Y214Q/R280Y) with a non-conservative substitution of a substrate-binding residue (I33Q). Tyr214 hydrogen bonds with O3 of the cofactor and is close to Arg374 which binds the α-carboxylate group of the substrate; Arg280 interacts with the distal carboxylate group of the substrate; and Ile33 is part of the hydrophobic patch near the entrance to the active site, presumably participating in the domain closure essential for the transamination reaction. In the triple-mutant enzyme, k(cat)' for desulfination of l-cysteine sulfinate increased to 0.5s(-1) (from 0.05s(-1) in wild-type enzyme), whereas k(cat)' for transamination of the same substrate was reduced from 510s(-1) to 0.05s(-1). Similarly, k(cat)' for ß-decarboxylation of l-aspartate increased from<0.0001s(-1) to 0.07s(-1), whereas k(cat)' for transamination was reduced from 530s(-1) to 0.13s(-1). l-Aspartate aminotransferase had thus been converted into an l-cysteine sulfinate desulfinase that catalyzes transamination and l-aspartate ß-decarboxylation as side reactions. The X-ray structures of the engineered l-cysteine sulfinate desulfinase in its pyridoxal-5'-phosphate and pyridoxamine-5'-phosphate form or liganded with a covalent coenzyme-substrate adduct identified the subtle structural changes that suffice for generating desulfinase activity and concomitantly abolishing transaminase activity toward dicarboxylic amino acids. Apparently, the triple mutation impairs the domain closure thus favoring reprotonation of alternative acceptor sites in coenzyme-substrate intermediates by bulk water.


Asunto(s)
Aspartato Aminotransferasas/química , Liasas de Carbono-Azufre/química , Liasas de Carbono-Azufre/genética , Dominio Catalítico/genética , Secuencia de Aminoácidos , Sustitución de Aminoácidos , Aminoácidos Dicarboxílicos/metabolismo , Aspartato Aminotransferasas/genética , Aspartato Aminotransferasas/metabolismo , Biocatálisis , Liasas de Carbono-Azufre/metabolismo , Cristalografía por Rayos X , Escherichia coli , Enlace de Hidrógeno , Ligandos , Modelos Moleculares , Datos de Secuencia Molecular , Conformación Proteica , Ingeniería de Proteínas , Fosfato de Piridoxal/química , Fosfato de Piridoxal/metabolismo , Piridoxamina/análogos & derivados , Piridoxamina/química , Piridoxamina/metabolismo , Especificidad por Sustrato
20.
J Am Chem Soc ; 135(48): 18160-75, 2013 Dec 04.
Artículo en Inglés | MEDLINE | ID: mdl-24147985

RESUMEN

Using (15)N solid-state NMR, we have studied protonation and H-bonded states of the cofactor pyridoxal 5'-phosphate (PLP) linked as an internal aldimine in alanine racemase (AlaR), aspartate aminotransferase (AspAT), and poly-L-lysine. Protonation of the pyridine nitrogen of PLP and the coupled proton transfer from the phenolic oxygen (enolimine form) to the aldimine nitrogen (ketoenamine form) is often considered to be a prerequisite to the initial step (transimination) of the enzyme-catalyzed reaction. Indeed, using (15)N NMR and H-bond correlations in AspAT, we observe a strong aspartate-pyridine nitrogen H-bond with H located on nitrogen. After hydration, this hydrogen bond is maintained. By contrast, in the case of solid lyophilized AlaR, we find that the pyridine nitrogen is neither protonated nor hydrogen bonded to the proximal arginine side chain. However, hydration establishes a weak hydrogen bond to pyridine. To clarify how AlaR is activated, we performed (13)C and (15)N solid-state NMR experiments on isotopically labeled PLP aldimines formed by lyophilization with poly-L-lysine. In the dry solid, only the enolimine tautomer is observed. However, a fast reversible proton transfer involving the ketoenamine tautomer is observed after treatment with either gaseous water or gaseous dry HCl. Hydrolysis requires the action of both water and HCl. The formation of an external aldimine with aspartic acid at pH 9 also produces the ketoenamine form stabilized by interaction with a second aspartic acid, probably via a H-bond to the phenolic oxygen. We postulate that O-protonation is an effectual mechanism for the activation of PLP, as is N-protonation, and that enzymes that are incapable of N-protonation employ this mechanism.


Asunto(s)
Alanina Racemasa/química , Aspartato Aminotransferasas/química , Escherichia coli/enzimología , Geobacillus stearothermophilus/enzimología , Polilisina/química , Fosfato de Piridoxal/química , Escherichia coli/química , Geobacillus stearothermophilus/química , Enlace de Hidrógeno , Espectroscopía de Resonancia Magnética , Protones
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