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1.
Cell ; 137(4): 708-20, 2009 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-19450518

RESUMEN

DNA damage induces apoptosis and many apoptotic genes are regulated via alternative splicing (AS), but little is known about the control mechanisms. Here we show that ultraviolet irradiation (UV) affects cotranscriptional AS in a p53-independent way, through the hyperphosphorylation of RNA polymerase II carboxy-terminal domain (CTD) and a subsequent inhibition of transcriptional elongation, estimated in vivo and in real time. Phosphomimetic CTD mutants not only display lower elongation but also duplicate the UV effect on AS. Consistently, nonphosphorylatable mutants prevent the UV effect. Apoptosis promoted by UV in cells lacking p53 is prevented when the change in AS of the apoptotic gene bcl-x is reverted, confirming the relevance of this mechanism. Splicing-sensitive microarrays revealed a significant overlap of the subsets of genes that have changed AS with UV and those that have reduced expression, suggesting that transcriptional coupling to AS is a key feature of the DNA-damage response.


Asunto(s)
Empalme Alternativo/efectos de la radiación , ARN Polimerasa II/metabolismo , Rayos Ultravioleta , Apoptosis , Línea Celular Tumoral , Daño del ADN , Diclororribofuranosil Benzoimidazol/farmacología , Fibronectinas/genética , Fibronectinas/metabolismo , Recuperación de Fluorescencia tras Fotoblanqueo , Humanos , Mutación , Análisis de Secuencia por Matrices de Oligonucleótidos , Fosforilación/efectos de los fármacos , Fosforilación/efectos de la radiación , ARN Polimerasa II/química , Transcripción Genética
2.
Mol Cell ; 55(3): 347-60, 2014 Aug 07.
Artículo en Inglés | MEDLINE | ID: mdl-24999238

RESUMEN

Polycomb group (PcG) proteins are required for normal differentiation and development and are frequently deregulated in cancer. PcG proteins are involved in gene silencing; however, their role in initiation and maintenance of transcriptional repression is not well defined. Here, we show that knockout of the Polycomb repressive complex 2 (PRC2) does not lead to significant gene expression changes in mouse embryonic stem cells (mESCs) and that it is dispensable for initiating silencing of target genes during differentiation. Transcriptional inhibition in mESCs is sufficient to induce genome-wide ectopic PRC2 recruitment to endogenous PcG target genes found in other tissues. PRC2 binding analysis shows that it is restricted to nucleosome-free CpG islands (CGIs) of untranscribed genes. Our results show that it is the transcriptional state that governs PRC2 binding, and we propose that it binds by default to nontranscribed CGI genes to maintain their silenced state and to protect cell identity.


Asunto(s)
Islas de CpG , Células Madre Embrionarias/metabolismo , Silenciador del Gen , Nucleosomas/genética , Nucleosomas/metabolismo , Complejo Represivo Polycomb 2/metabolismo , Animales , Diferenciación Celular/genética , Diferenciación Celular/fisiología , Células Cultivadas , Diclororribofuranosil Benzoimidazol/farmacología , Diterpenos/farmacología , Epigénesis Genética , Compuestos Epoxi/farmacología , Regulación del Desarrollo de la Expresión Génica/efectos de los fármacos , Técnicas de Inactivación de Genes , Silenciador del Gen/efectos de los fármacos , Genoma , Ratones , Fenantrenos/farmacología , Unión Proteica/genética , Unión Proteica/fisiología
3.
Proc Natl Acad Sci U S A ; 115(29): E6780-E6788, 2018 07 17.
Artículo en Inglés | MEDLINE | ID: mdl-29967139

RESUMEN

In mice, transcription initiates at the mid-one-cell stage and transcriptional activity dramatically increases during the two-cell stage, a process called zygotic gene activation (ZGA). Associated with ZGA is a marked change in the pattern of gene expression that occurs after the second round of DNA replication. To distinguish ZGA before and after the second-round DNA replication, the former and latter are called minor and major ZGA, respectively. Although major ZGA are required for development beyond the two-cell stage, the function of minor ZGA is not well understood. Transiently inhibiting minor ZGA with 5, 6-dichloro-1-ß-d-ribofuranosyl-benzimidazole (DRB) resulted in the majority of embryos arresting at the two-cell stage and retention of the H3K4me3 mark that normally decreases. After release from DRB, at which time major ZGA normally occurred, transcription initiated with characteristics of minor ZGA but not major ZGA, although degradation of maternal mRNA normally occurred. Thus, ZGA occurs sequentially starting with minor ZGA that is critical for the maternal-to-zygotic transition.


Asunto(s)
Blastocisto/metabolismo , Desarrollo Embrionario/fisiología , Regulación del Desarrollo de la Expresión Génica/fisiología , Cigoto/metabolismo , Animales , Blastocisto/citología , Diclororribofuranosil Benzoimidazol/farmacología , Desarrollo Embrionario/efectos de los fármacos , Regulación del Desarrollo de la Expresión Génica/efectos de los fármacos , Histonas/metabolismo , Ratones , Cigoto/citología
4.
Molecules ; 26(7)2021 Mar 31.
Artículo en Inglés | MEDLINE | ID: mdl-33807474

RESUMEN

Protein kinases are a large class of enzymes with numerous biological roles and many have been implicated in a vast array of diseases, including cancer and the novel coronavirus infection COVID-19. Thus, the development of chemical probes to selectively target each kinase is of great interest. Inhibition of protein kinases with ATP-competitive inhibitors has historically been the most widely used method. However, due to the highly conserved structures of ATP-sites, the identification of truly selective chemical probes is challenging. In this review, we use the Ser/Thr kinase CK2 as an example to highlight the historical challenges in effective and selective chemical probe development, alongside recent advances in the field and alternative strategies aiming to overcome these problems. The methods utilised for CK2 can be applied to an array of protein kinases to aid in the discovery of chemical probes to further understand each kinase's biology, with wide-reaching implications for drug development.


Asunto(s)
Quinasa de la Caseína II/metabolismo , Sondas Moleculares/química , Inhibidores de Proteínas Quinasas/química , Proteínas Quinasas/química , Proteínas Quinasas/metabolismo , Adenosina Trifosfato/metabolismo , Sitios de Unión , COVID-19 , Quinasa de la Caseína II/química , Diclororribofuranosil Benzoimidazol/química , Diclororribofuranosil Benzoimidazol/farmacología , Humanos , Sondas Moleculares/metabolismo , Naftiridinas/química , Naftiridinas/farmacología , Fenazinas/química , Fenazinas/farmacología , Polifenoles/química , Polifenoles/farmacología , Inhibidores de Proteínas Quinasas/farmacología
5.
J Struct Biol ; 208(3): 107398, 2019 12 01.
Artículo en Inglés | MEDLINE | ID: mdl-31585176

RESUMEN

The nucleolus is a multifunctional structure of the eukaryotic cell nucleus. However, its primary role is ribosome formation. Although the factors and mechanisms involved in ribogenesis are well conserved in eukaryotes, two types of nucleoli have been observed under the electron microscope: a tricompartmentalized nucleolus in amniotes and a bicompartmentalized nucleolus in other species. A recent study has also revealed that turtles, although belonging to amniotes, displayed a nucleolus with bipartite organization, suggesting that this reptile group may have carried out a reversion phenomenon during evolution. In this study, we examine in great detail the functional organization of the turtle nucleolus. In liver and spleen cells cultured in vitro, we confirm that the turtle nucleolus is mainly formed by two components: a fibrillar zone surrounded by a granular zone. We further show that the fibrillar zone includes densely-contrasted strands, which are positive after silver-stained Nucleolar Organizer Region (Ag-NOR) staining and DNA labelling. We also reveal that the dense strands condensed into a very compact mass within the fibrillar zone after a treatment with actinomycin D or 5,6-dichlorobenzimidazole riboside. Finally, by using pulse-chase experiments with BrUTP, three-dimensional image reconstructions of confocal optical sections, and electron microscopy analysis of ultrathin sections, we show that the topological and spatial dynamics of rRNA within the nucleolus extend from upstream binding factor (UBF)-positive sites in the fibrillar zone to the granular zone, without ever releasing the positive sites for the UBF. Together, these results seem to clearly indicate that the compartmentalization of the turtle nucleolus into two main components reflects a less orderly organization of ribosome formation.


Asunto(s)
Nucléolo Celular/genética , Nucléolo Celular/ultraestructura , Tortugas , Animales , Nucléolo Celular/efectos de los fármacos , Células Cultivadas , Dactinomicina/farmacología , Diclororribofuranosil Benzoimidazol/farmacología , Hígado/citología , Microscopía Confocal , Región Organizadora del Nucléolo , ARN Ribosómico/metabolismo , Bazo/citología
6.
J Cell Physiol ; 234(5): 6023-6032, 2019 05.
Artículo en Inglés | MEDLINE | ID: mdl-30584668

RESUMEN

Acute lung injury (ALI) is a life-threatening, diffuse heterogeneous lung injury characterized by acute onset, pulmonary edema, and respiratory failure. Lipopolysaccharide (LPS) is a leading cause for ALI and when administered to a mouse it induces a lung phenotype exhibiting some of the clinical characteristics of human ALI. This study focused on investigating whether microRNA-27b (miR-27b) affects ALI in a mouse model established by LPS-induction and to further explore the underlying mechanism. After model establishment, the mice were treated with miR-27b agomir, miR-27b antagomir, or D-ribofuranosylbenzimidazole (an inhibitor of nuclear factor-E2-related factor 2 [Nrf2]) to determine levels of miR-27b, Nrf2, nuclear factor kappa-light-chain-enhancer of activated B cells nuclear factor κB (NF-κB), p-NF-κB, and heme oxygenase-1 (HO-1). The levels of interleukin (IL)-1ß, IL-6, and tumor necrosis factor-α (TNF-α) in bronchoalveolar lavage fluid (BALF) were determined. The results of luciferase activity suggested that Nrf2 was a target gene of miR-27b. It was indicated that the Nrf2 level decreased in lung tissues from ALI mice. The downregulation of miR-27b decreased the levels of IL-1ß, IL-6, and TNF-α in BALF of ALI mice. Downregulated miR-27b increased Nrf2 level, thus enhancing HO-1 level along with reduction of NF-κB level as well as the extent of NF-κB phosphorylation in the lung tissues of the transfected mice. Pathological changes were ameliorated in LPS-reduced mice elicited by miR-27b inhibition. The results of this study demonstrate that downregulated miR-27b couldenhance Nrf2 and HO-1 expressions, inhibit NF-κB signaling pathway, which exerts a protective effect on LPS-induced ALI in mice.


Asunto(s)
Lesión Pulmonar Aguda/prevención & control , Antagomirs/farmacología , Antiinflamatorios/farmacología , Diclororribofuranosil Benzoimidazol/farmacología , Pulmón/efectos de los fármacos , MicroARNs/antagonistas & inhibidores , Factor 2 Relacionado con NF-E2/antagonistas & inhibidores , FN-kappa B/metabolismo , Lesión Pulmonar Aguda/inducido químicamente , Lesión Pulmonar Aguda/metabolismo , Lesión Pulmonar Aguda/patología , Animales , Citocinas/metabolismo , Modelos Animales de Enfermedad , Regulación hacia Abajo , Hemo-Oxigenasa 1/genética , Hemo-Oxigenasa 1/metabolismo , Lipopolisacáridos , Pulmón/metabolismo , Pulmón/patología , Masculino , Proteínas de la Membrana/genética , Proteínas de la Membrana/metabolismo , Ratones Endogámicos C57BL , MicroARNs/genética , MicroARNs/metabolismo , Factor 2 Relacionado con NF-E2/genética , Factor 2 Relacionado con NF-E2/metabolismo , FN-kappa B/genética , Edema Pulmonar/inducido químicamente , Edema Pulmonar/metabolismo , Edema Pulmonar/patología , Edema Pulmonar/prevención & control , Transducción de Señal
7.
Neurobiol Learn Mem ; 166: 107092, 2019 12.
Artículo en Inglés | MEDLINE | ID: mdl-31536788

RESUMEN

Findings of several experiments indicate that many treatments that typically interfere with memory consolidation are ineffective in preventing or attenuating memory induced by intense training. As extensive evidence suggests that the consolidation of newly acquired memories requires gene expression and de novo protein synthesis the present study investigated whether intense training prevents consolidation impairment induced by blockers of mRNA and protein synthesis. Rats were given a single inhibitory training trial using a moderate (1.0 mA) or a relatively intense (2.0 mA) foot-shock. Bilateral hippocampal infusions of the mRNA synthesis blocker DRB (10, 40 or 80 ng/0.5 µL/hemisphere) or the protein synthesis inhibitor anisomycin (ANI), an inhibitor de novo protein synthesis (15.62, 31.25, or 62.50 µg/0.5 µL/hemisphere) were administered 15 min prior to training. Retention was measured at 30 min or 48 h following training. DRB and ANI impaired memory of moderate training in a dose-dependent manner without affecting short-term memory. In contrast, memory consolidation was not impaired in the groups trained with 2.0 mA. The findings showed that: (1) inhibitors of transcription and translation in the hippocampus impair the consolidation of memory of inhibitory avoidance learning induced by moderate levels of aversive stimulation and (2) blocking of mRNA and protein synthesis does not prevent the consolidation of memory induced by relatively high levels of aversive stimulation. These findings do not support the hypothesis that gene expression and de novo protein synthesis are necessary steps for long-term memory formation as memory was not impaired if intense foot-shock was used in training.


Asunto(s)
Reacción de Prevención/efectos de los fármacos , Hipocampo/efectos de los fármacos , Consolidación de la Memoria/efectos de los fármacos , Biosíntesis de Proteínas/efectos de los fármacos , Transcripción Genética/efectos de los fármacos , Animales , Anisomicina/farmacología , Reacción de Prevención/fisiología , Diclororribofuranosil Benzoimidazol/farmacología , Electrochoque , Hipocampo/fisiología , Masculino , Consolidación de la Memoria/fisiología , Inhibidores de la Síntesis del Ácido Nucleico/farmacología , Inhibidores de la Síntesis de la Proteína/farmacología , Ratas , Ratas Wistar
8.
J Biol Chem ; 292(37): 15489-15500, 2017 09 15.
Artículo en Inglés | MEDLINE | ID: mdl-28743741

RESUMEN

DNA replication greatly enhances expression of the herpes simplex virus 1 (HSV-1) γ2 late genes by still unknown mechanisms. Here, we demonstrate that 5,6-dichloro-1-ß-d-ribofuranosylbenzimidazole (DRB), an inhibitor of CDK9, suppresses expression of γ2 late genes with an IC50 of 5 µm, which is at least 10 times lower than the IC50 value required for inhibition of expression of early genes. The effect of DRB could not be explained by inhibition of DNA replication per se or loading of RNA polymerase II to late promoters and subsequent reduction of transcription. Instead, DRB reduces accumulation of γ2 late mRNA in the cytoplasm. In addition, we show that siRNA-mediated knockdown of the transcription factor SPT5, but not NELF-E, also gives rise to a specific inhibition of HSV-1 late gene expression. Finally, addition of DRB reduces co-immunoprecipitation of ICP27 using an anti-SPT5 antibody. Our results suggest that efficient expression of replication-dependent γ2 late genes is, at least in part, regulated by CDK9 dependent co- and/or post-transcriptional events involving SPT5 and ICP27.


Asunto(s)
Proteínas Cromosómicas no Histona/metabolismo , Quinasa 9 Dependiente de la Ciclina/metabolismo , Replicación del ADN , Regulación Viral de la Expresión Génica , Herpesvirus Humano 1/fisiología , Proteínas Inmediatas-Precoces/metabolismo , Factores de Elongación Transcripcional/metabolismo , Replicación Viral , Sustitución de Aminoácidos , Antivirales/farmacología , Línea Celular , Inmunoprecipitación de Cromatina , Proteínas Cromosómicas no Histona/antagonistas & inhibidores , Proteínas Cromosómicas no Histona/química , Proteínas Cromosómicas no Histona/genética , Biología Computacional , Quinasa 9 Dependiente de la Ciclina/antagonistas & inhibidores , Quinasa 9 Dependiente de la Ciclina/genética , Replicación del ADN/efectos de los fármacos , Diclororribofuranosil Benzoimidazol/farmacología , Regulación Viral de la Expresión Génica/efectos de los fármacos , Herpesvirus Humano 1/efectos de los fármacos , Herpesvirus Humano 1/crecimiento & desarrollo , Humanos , Proteínas Inmediatas-Precoces/química , Proteínas Inmediatas-Precoces/genética , Inmunoprecipitación , Mutación , Inhibidores de la Síntesis del Ácido Nucleico/farmacología , Regiones Promotoras Genéticas/efectos de los fármacos , Inhibidores de Proteínas Quinasas/farmacología , Interferencia de ARN , Factores de Transcripción/antagonistas & inhibidores , Factores de Transcripción/genética , Factores de Transcripción/metabolismo , Factores de Elongación Transcripcional/antagonistas & inhibidores , Factores de Elongación Transcripcional/química , Factores de Elongación Transcripcional/genética , Proteínas Virales/antagonistas & inhibidores , Proteínas Virales/química , Proteínas Virales/genética , Proteínas Virales/metabolismo , Replicación Viral/efectos de los fármacos
9.
Learn Mem ; 24(6): 225-230, 2017 06.
Artículo en Inglés | MEDLINE | ID: mdl-28507031

RESUMEN

Amygdala lesions impair, but do not prevent, acquisition of cerebellum-dependent eyeblink conditioning suggesting that the amygdala modulates cerebellar learning. Two-factor theories of eyeblink conditioning posit that a fast-developing memory within the amygdala facilitates slower-developing memory within the cerebellum. The current study tested this hypothesis by impairing memory consolidation within the amygdala with inhibition of protein synthesis, transcription, and NMDA receptors in rats. Rats given infusions of anisomycin or DRB into the central amygdala (CeA) immediately after each eyeblink conditioning session were severely impaired in contextual and cued fear conditioning, but were completely unimpaired in eyeblink conditioning. Rats given the NMDA antagonist ifenprodil into the CeA before each eyeblink conditioning session also showed impaired fear conditioning, but no deficit in eyeblink conditioning. The results indicate that memory formation within the CeA is not necessary for its modulation of cerebellar learning mechanisms. The CeA may modulate cerebellar learning and retention through an attentional mechanism that develops within the training sessions.


Asunto(s)
Núcleo Amigdalino Central/fisiología , Cerebelo/fisiología , Condicionamiento Palpebral/fisiología , Consolidación de la Memoria/fisiología , Animales , Anisomicina/farmacología , Núcleo Amigdalino Central/efectos de los fármacos , Cerebelo/efectos de los fármacos , Condicionamiento Clásico/efectos de los fármacos , Condicionamiento Clásico/fisiología , Condicionamiento Palpebral/efectos de los fármacos , Diclororribofuranosil Benzoimidazol/farmacología , Electromiografía , Antagonistas de Aminoácidos Excitadores/farmacología , Masculino , Consolidación de la Memoria/efectos de los fármacos , Piperidinas/farmacología , Inhibidores de la Síntesis de la Proteína/farmacología , Ratas , Ratas Long-Evans
10.
Neurobiol Learn Mem ; 142(Pt A): 21-29, 2017 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-28039087

RESUMEN

It has been found that interference with neural activity after a consolidated memory is retrieved produces an amnestic state; this has been taken has indicative of destabilization of the memory trace that would have been produced by a process of reconsolidation (allowing for maintenance of the original trace). However, a growing body of evidence shows that this is not a reliable effect, and that it is dependent upon some experimental conditions, such as the age of the memory, memory reactivation procedures, the predictability of the reactivation stimulus, and strength of training. In some instances, where post-retrieval treatments induce a retention deficit (which would be suggestive of interference with reconsolidation), memory is rescued by simple passing of time or by repeated retention tests. We now report that post-training and post-retrieval inhibition of transcription and translation in dorsal striatum, a structure where both of these manipulations have not been studied, produce interference with consolidation and a transitory retention deficit, respectively. These results do not give support to the reconsolidation hypothesis and lead to the conclusion that the post-activation deficiencies are due to interference with retrieval of information.


Asunto(s)
Cuerpo Estriado/metabolismo , Consolidación de la Memoria/efectos de los fármacos , Memoria/efectos de los fármacos , Inhibidores de la Síntesis del Ácido Nucleico/farmacología , Biosíntesis de Proteínas/efectos de los fármacos , Inhibidores de la Síntesis de la Proteína/farmacología , Transcripción Genética/efectos de los fármacos , Animales , Anisomicina/farmacología , Reacción de Prevención/efectos de los fármacos , Cuerpo Estriado/efectos de los fármacos , ADN/biosíntesis , Diclororribofuranosil Benzoimidazol/farmacología , Masculino , ARN/biosíntesis , Ratas Wistar
11.
J Biol Chem ; 290(9): 5267-79, 2015 Feb 27.
Artículo en Inglés | MEDLINE | ID: mdl-25568312

RESUMEN

KCl withdrawal-induced apoptosis in cerebellar granule neurons is associated with aberrant cell cycle activation, and treatment with cyclin-dependent kinase (Cdk) inhibitors protects cells from undergoing apoptosis. Because the Cdk inhibitor flavopiridol is known to inhibit RNA polymerase II (Pol II)-dependent transcription elongation by inhibiting the positive transcription elongation factor b (P-TEFb, a complex of CDK9 and cyclin T), we examined whether inhibition of RNA Pol II protects neurons from apoptosis. Treatment of neurons with 5, 6-dichloro-1-ß-D-ribobenzimidazole (DRB), an RNA Pol II-dependent transcription elongation inhibitor, and flavopiridol inhibited phosphorylation and activation of Pol II and protected neurons from undergoing apoptosis. In addition to Pol II, neurons subjected to KCl withdrawal showed increased phosphorylation and activation of p70 S6 kinase, which was inhibited by both DRB and flavopiridol. Immunostaining analysis of the neurons deprived of KCl showed increased nuclear levels of phospho-p70 S6 kinase, and neurons protected with DRB and flavopiridol showed accumulation of the kinase into large spliceosome assembly factor-positive speckle domains within the nuclei. The formation of these foci corresponded with cell survival, and removal of the inhibitors resulted in dispersal of the speckles into smaller foci with subsequent apoptosis induction. Because p70 S6 kinase is known to induce translation of mRNAs containing a 5'-terminal oligopyrimidine tract, our data suggest that transcription and translation of this subset of mRNAs may contribute to KCl withdrawal-induced apoptosis in neurons.


Asunto(s)
Apoptosis , Flavonoides , Neuronas/metabolismo , Piperidinas , ARN Polimerasa II/metabolismo , Proteínas Quinasas S6 Ribosómicas 70-kDa/metabolismo , Animales , Western Blotting , Células Cultivadas , Cerebelo/citología , Quinasas Ciclina-Dependientes/antagonistas & inhibidores , Quinasas Ciclina-Dependientes/genética , Quinasas Ciclina-Dependientes/metabolismo , Diclororribofuranosil Benzoimidazol/farmacología , Inhibidores Enzimáticos/farmacología , Flavonoides/farmacología , Inmunohistoquímica , Neuronas/citología , Neuronas/efectos de los fármacos , Fosforilación/efectos de los fármacos , Piperidinas/farmacología , Cloruro de Potasio/metabolismo , Cloruro de Potasio/farmacología , Ratas Sprague-Dawley , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Elongación de la Transcripción Genética/efectos de los fármacos
12.
J Cell Biochem ; 117(1): 126-31, 2016 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-26085436

RESUMEN

In this work, we have found that casein kinase II (CKII) phosphorylates the CacyBP/SIP protein under in vitro conditions and have mapped the phosphorylation site to threonine 184. Moreover, we present evidence that S100A6, a CacyBP/SIP interacting protein, inhibits this phosphorylation in the presence of Ca(2+). CacyBP/SIP phosphorylation by CKII was also observed in neuroblastoma NB2a cells. Interestingly, we have found that the effect of DRB, a CKII inhibitor, on CacyBP/SIP phosphorylation state is similar to that of S100A6 overexpression. Phosphorylation at threonine 184 seems to have an effect on CacyBP/SIP phosphatase activity since the T184E phosphorylation mimic mutant overexpressed in NB2a cells has lower phosphatase activity toward p-ERK1/2 when compared to the non-phosphorylable T184A mutant or to the wild-type protein. In conclusion, our data suggest that S100A6 and Ca(2+), through inhibiting CacyBP/SIP phosphorylation on threonine 184, are important regulators of CacyBP/SIP phosphatase activity and of ERK1/2-Elk-1 signaling pathway.


Asunto(s)
Proteínas de Unión al Calcio/metabolismo , Proteínas de Ciclo Celular/metabolismo , Proteínas S100/metabolismo , Proteína Elk-1 con Dominio ets/metabolismo , Animales , Proteínas de Unión al Calcio/genética , Proteínas de Ciclo Celular/genética , Línea Celular Tumoral , Diclororribofuranosil Benzoimidazol/farmacología , Ratones , Neuroblastoma/metabolismo , Fosforilación/efectos de los fármacos , Fosforilación/genética , Proteína A6 de Unión a Calcio de la Familia S100 , Proteínas S100/genética
13.
Development ; 140(20): 4182-92, 2013 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-24004944

RESUMEN

Members of the Polycomb group of repressors and trithorax group of activators maintain heritable states of transcription by modifying nucleosomal histones or remodeling chromatin. Although tremendous progress has been made toward defining the biochemical activities of Polycomb and trithorax group proteins, much remains to be learned about how they interact with each other and the general transcription machinery to maintain on or off states of gene expression. The trithorax group protein Kismet (KIS) is related to the SWI/SNF and CHD families of chromatin remodeling factors. KIS promotes transcription elongation, facilitates the binding of the trithorax group histone methyltransferases ASH1 and TRX to active genes, and counteracts repressive methylation of histone H3 on lysine 27 (H3K27) by Polycomb group proteins. Here, we sought to clarify the mechanism of action of KIS and how it interacts with ASH1 to antagonize H3K27 methylation in Drosophila. We present evidence that KIS promotes transcription elongation and counteracts Polycomb group repression via distinct mechanisms. A chemical inhibitor of transcription elongation, DRB, had no effect on ASH1 recruitment or H3K27 methylation. Conversely, loss of ASH1 function had no effect on transcription elongation. Mutations in kis cause a global reduction in the di- and tri-methylation of histone H3 on lysine 36 (H3K36) - modifications that antagonize H3K27 methylation in vitro. Furthermore, loss of ASH1 significantly decreases H3K36 dimethylation, providing further evidence that ASH1 is an H3K36 dimethylase in vivo. These and other findings suggest that KIS antagonizes Polycomb group repression by facilitating ASH1-dependent H3K36 dimethylation.


Asunto(s)
Proteínas Cromosómicas no Histona/metabolismo , ADN Helicasas/metabolismo , Proteínas de Unión al ADN/metabolismo , Proteínas de Drosophila/metabolismo , Drosophila/metabolismo , Proteínas de Homeodominio/metabolismo , Proteínas del Grupo Polycomb/metabolismo , Factores de Transcripción/metabolismo , Animales , Ensamble y Desensamble de Cromatina , Diclororribofuranosil Benzoimidazol/farmacología , Drosophila/genética , Histona Metiltransferasas , N-Metiltransferasa de Histona-Lisina/metabolismo , Histonas , Metilación , Inhibidores de la Síntesis del Ácido Nucleico/farmacología , Glándulas Salivales/metabolismo , Transcripción Genética/efectos de los fármacos
14.
Wound Repair Regen ; 24(1): 89-99, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-26646714

RESUMEN

The goal of this study was to develop and validate a simple but quantitative cell-based assay to identify compounds that might be used pharmaceutically to give tissue repair a more regenerative character. The cornea was used as the model, and some specific aspects of repair in this organ were incorporated into assay design. A quantitative cell-based assay was developed based on transcriptional promoter activity of fibrotic marker genes ACT2A and TGFB2. Immortalized corneal stromal cells (HTK) or corneal epithelial cells (HCLE) were tested and compared to primary corneal stromal cells. Cells were transiently transfected with constructs containing the firefly luciferase reporter gene driven by transcriptional promoters for the selected fibrotic marker genes. A selected panel of seven chemical test compounds was used, containing three known fibrosis inhibitors: lovastatin (LOV), tyrphostin AG 1296 (6,7-dimethoxy-3-phenylquinoxaline) and SB203580 (4-(4-fluorophenyl)-2-(4-methylsulfinylphenyl)-5-(4-pyridyl)1H-imidazole), and four potential fibrosis inhibitors: 5-iodotubercidin (4-amino-5-iodo-7-(ß-D-ribofuranosyl)-pyrrolo(2,3-d)pyrimidine), anisomycin, DRB (5,6-dichloro-1-ß-D-ribofuranosyl-benzimidazole) and latrunculin B. Transfected cells were treated with TGFB2 in the presence or absence of one of the test compounds. To validate the assay, compounds were tested for their direct effects on gene expression in the immortalized cell lines and primary human corneal keratocytes using RT-PCR and immunohistochemistry. Three "hits" were validated LOV, SB203580 and anisomycin. This assay, which can be applied in a high throughput format to screen large libraries of uncharacterized compounds, or known compounds that might be repurposed, offers a valuable tool for identifying new treatments to address a major unmet medical need. Anisomycin has not previously been characterized as antifibrotic, thus, this is a novel finding of the study.


Asunto(s)
Queratocitos de la Córnea/efectos de los fármacos , Epitelio Corneal/efectos de los fármacos , Regeneración/efectos de los fármacos , Cicatrización de Heridas/efectos de los fármacos , Actinas/efectos de los fármacos , Actinas/genética , Animales , Anisomicina/farmacología , Compuestos Bicíclicos Heterocíclicos con Puentes/farmacología , Línea Celular , Córnea/citología , Córnea/efectos de los fármacos , Queratocitos de la Córnea/citología , Técnicas Citológicas , Diclororribofuranosil Benzoimidazol/farmacología , Inhibidores Enzimáticos/farmacología , Epitelio Corneal/citología , Humanos , Inhibidores de Hidroximetilglutaril-CoA Reductasas/farmacología , Imidazoles/farmacología , Lovastatina/farmacología , Inhibidores de la Síntesis de la Proteína/farmacología , Piridinas/farmacología , Conejos , Tiazolidinas/farmacología , Factor de Crecimiento Transformador beta2/efectos de los fármacos , Factor de Crecimiento Transformador beta2/genética , Tubercidina/análogos & derivados , Tubercidina/farmacología , Tirfostinos/farmacología
15.
PLoS Genet ; 9(11): e1003897, 2013 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-24244179

RESUMEN

Molecular mechanisms for the establishment of transcriptional memory are poorly understood. 5,6-dichloro-1-D-ribofuranosyl-benzimidazole (DRB) is a P-TEFb kinase inhibitor that artificially induces the poised RNA polymerase II (RNAPII), thereby manifesting intermediate steps for the establishment of transcriptional activation. Here, using genetics and DRB, we show that mammalian Absent, small, or homeotic discs 1-like (Ash1l), a member of the trithorax group proteins, methylates Lys36 of histone H3 to promote the establishment of Hox gene expression by counteracting Polycomb silencing. Importantly, we found that Ash1l-dependent Lys36 di-, tri-methylation of histone H3 in a coding region and exclusion of Polycomb group proteins occur independently of transcriptional elongation in embryonic stem (ES) cells, although both were previously thought to be consequences of transcription. Genome-wide analyses of histone H3 Lys36 methylation under DRB treatment have suggested that binding of the retinoic acid receptor (RAR) to a certain genomic region promotes trimethylation in the RAR-associated gene independent of its ongoing transcription. Moreover, DRB treatment unveils a parallel response between Lys36 methylation of histone H3 and occupancy of either Tip60 or Mof in a region-dependent manner. We also found that Brg1 is another key player involved in the response. Our results uncover a novel regulatory cascade orchestrated by Ash1l with RAR and provide insights into mechanisms underlying the establishment of the transcriptional activation that counteracts Polycomb silencing.


Asunto(s)
Proteínas de Unión al ADN/metabolismo , Histonas/metabolismo , Proteínas del Grupo Polycomb/genética , Factores de Transcripción/metabolismo , Transcripción Genética , Factores de Elongación Transcripcional/genética , Animales , Cromatina/genética , Proteínas de Unión al ADN/genética , Diclororribofuranosil Benzoimidazol/farmacología , Proteínas de Drosophila/metabolismo , Drosophila melanogaster , Silenciador del Gen , Histona Acetiltransferasas/metabolismo , N-Metiltransferasa de Histona-Lisina , Histonas/genética , Humanos , Lisina/genética , Metilación , Proteínas Nucleares/metabolismo , Proteínas del Grupo Polycomb/metabolismo , Factor B de Elongación Transcripcional Positiva/antagonistas & inhibidores , Factor B de Elongación Transcripcional Positiva/metabolismo , ARN Polimerasa II/genética , Factores de Transcripción/genética , Factores de Elongación Transcripcional/metabolismo
16.
Proc Natl Acad Sci U S A ; 110(3): 1071-6, 2013 Jan 15.
Artículo en Inglés | MEDLINE | ID: mdl-23277583

RESUMEN

Extinction of contextual fear in rats is enhanced by exposure to a novel environment at 1-2 h before or 1 h after extinction training. This effect is antagonized by administration of protein synthesis inhibitors anisomycin and rapamycin into the hippocampus, but not into the amygdala, immediately after either novelty or extinction training, as well as by the gene expression blocker 5,6-dichloro-1-beta-D-ribofuranosylbenzimidazole administered after novelty training, but not after extinction training. Thus, this effect can be attributed to a mechanism similar to synaptic tagging, through which long-term potentiation can be enhanced by other long-term potentiations or by exposure to a novel environment in a protein synthesis-dependent fashion. Extinction learning produces a tag at the appropriate synapses, whereas novelty learning causes the synthesis of plasticity-related proteins that are captured by the tag, strengthening the synapses that generated this tag.


Asunto(s)
Extinción Psicológica/fisiología , Aprendizaje/fisiología , Amígdala del Cerebelo/efectos de los fármacos , Amígdala del Cerebelo/fisiología , Animales , Anisomicina/administración & dosificación , Diclororribofuranosil Benzoimidazol/farmacología , Extinción Psicológica/efectos de los fármacos , Miedo/efectos de los fármacos , Miedo/fisiología , Hipocampo/efectos de los fármacos , Hipocampo/fisiología , Aprendizaje/efectos de los fármacos , Potenciación a Largo Plazo/efectos de los fármacos , Potenciación a Largo Plazo/fisiología , Masculino , Inhibidores de la Síntesis de la Proteína/administración & dosificación , Ratas , Ratas Wistar , Sirolimus/administración & dosificación , Transcripción Genética/efectos de los fármacos
17.
J Biol Chem ; 288(34): 24302-15, 2013 Aug 23.
Artículo en Inglés | MEDLINE | ID: mdl-23828199

RESUMEN

Elongin A was shown previously to be capable of potently activating the rate of RNA polymerase II (RNAPII) transcription elongation in vitro by suppressing transient pausing by the enzyme at many sites along DNA templates. The role of Elongin A in RNAPII transcription in mammalian cells, however, has not been clearly established. In this report, we investigate the function of Elongin A in RNAPII transcription. We present evidence that Elongin A associates with the IIO form of RNAPII at sites of newly transcribed RNA and is relocated to dotlike domains distinct from those containing RNAPII when cells are treated with the kinase inhibitor 5,6-dichloro-1-ß-d-ribofuranosylbenzimidazole. Significantly, Elongin A is required for maximal induction of transcription of the stress response genes ATF3 and p21 in response to several stimuli. Evidence from structure-function studies argues that Elongin A transcription elongation activity, but not its ubiquitination activity, is most important for its function in induction of transcription of ATF3 and p21. Taken together, our data provide new insights into the function of Elongin A in RNAPII transcription and bring to light a previously unrecognized role for Elongin A in the regulation of stress response genes.


Asunto(s)
ARN Polimerasa II/metabolismo , Factores de Transcripción/metabolismo , Iniciación de la Transcripción Genética/fisiología , Factor de Transcripción Activador 3/biosíntesis , Factor de Transcripción Activador 3/genética , Animales , Diclororribofuranosil Benzoimidazol/farmacología , Elonguina , Inhibidores Enzimáticos/farmacología , Células HeLa , Humanos , Ratones , ARN Polimerasa II/antagonistas & inhibidores , ARN Polimerasa II/genética , Ratas , Estrés Fisiológico/efectos de los fármacos , Estrés Fisiológico/fisiología , Factores de Transcripción/genética , Iniciación de la Transcripción Genética/efectos de los fármacos
18.
Biochem Biophys Res Commun ; 449(3): 357-63, 2014 Jul 04.
Artículo en Inglés | MEDLINE | ID: mdl-24845383

RESUMEN

In platelets, nitric oxide (NO) activates cGMP/PKG signalling, whereas prostaglandins and adenosine signal through cAMP/PKA. Cyclic nucleotide signalling has been considered to play an inhibitory role in platelets. However, an early stimulatory effect of NO and cGMP-PKG signalling in low dose agonist-induced platelet activation have recently been suggested. Here, we investigated whether different experimental conditions could explain some of the discrepancy reported for platelet cGMP-PKG-signalling. We treated gel-filtered human platelets with cGMP and cAMP analogues, and used flow cytometric assays to detect low dose thrombin-induced formation of small platelet aggregates, single platelet disappearance (SPD), platelet-derived microparticles (PMP) and thrombin receptor agonist peptide (TRAP)-induced P-selectin expression. All four agonist-induced platelet activation phases were blocked when platelets were costimulated with the PKG activators 8-Br-PET-cGMP or 8-pCPT-cGMP and low-doses of thrombin or TRAP. However, extended incubation with 8-Br-PET-cGMP decreased its inhibition of TRAP-induced P-selectin expression in a time-dependent manner. This effect did not involve desensitisation of PKG or PKA activity, measured as site-specific VASP phosphorylation. Moreover, PKG activators in combination with the PKA activator Sp-5,6-DCL-cBIMPS revealed additive inhibitory effect on TRAP-induced P-selectin expression. Taken together, we found no evidence for a stimulatory role of cGMP/PKG in platelets activation and conclude rather that cGMP/PKG signalling has an important inhibitory function in human platelet activation.


Asunto(s)
Micropartículas Derivadas de Células/efectos de los fármacos , GMP Cíclico/análogos & derivados , Selectina-P/biosíntesis , Agregación Plaquetaria/efectos de los fármacos , Receptores de Trombina/fisiología , Tionucleótidos/farmacología , Trombina/farmacología , Micropartículas Derivadas de Células/fisiología , Células Cultivadas , AMP Cíclico/análogos & derivados , GMP Cíclico/farmacología , Proteínas Quinasas Dependientes de GMP Cíclico/metabolismo , Diclororribofuranosil Benzoimidazol/análogos & derivados , Diclororribofuranosil Benzoimidazol/farmacología , Humanos , Factores de Tiempo
19.
J Pharmacol Exp Ther ; 349(2): 239-47, 2014 May.
Artículo en Inglés | MEDLINE | ID: mdl-24610957

RESUMEN

Clinically used calcineurin inhibitors, including tacrolimus (FK506) and cyclosporine A, can induce calcineurin inhibitor-induced pain syndrome (CIPS), which is characterized as severe pain and pain hypersensitivity. Increased synaptic N-methyl-D-aspartate receptor (NMDAR) activity in the spinal dorsal horn plays a critical role in the development of CIPS. Casein kinase II (CK2), a serine/threonine protein kinase, can regulate synaptic NMDAR activity in the brain. In this study, we determined whether spinal CK2 is involved in increased NMDAR activity and pain hypersensitivity caused by systemic administration of FK506 in rats. FK506 treatment caused a large increase in the amplitude of NMDAR-mediated excitatory postsynaptic currents (EPSCs) evoked by primary afferent stimulation and in the frequency of miniature EPSCs of spinal dorsal horn neurons. CK2 inhibition with either 5,6-dichloro-1-ß-d-ribofuranosylbenzimidazole (DRB) or 4,5,6,7-tetrabromobenzotriazole (TBB) completely normalized the amplitude of evoked NMDAR-EPSCs of dorsal horn neurons in FK506-treated rats. In addition, DRB or TBB significantly attenuated the amplitude of NMDAR currents elicited by puff application of N-methyl-D-aspartate to dorsal horn neurons in FK506-treated rats. Furthermore, treatment with DRB or TBB significantly reduced the frequency of miniature EPSCs of spinal dorsal horn neurons increased by FK506 treatment. In addition, intrathecal injection of DRB or TBB dose-dependently reversed tactile allodynia and mechanical hyperalgesia in FK506-treated rats. Collectively, our findings indicate that CK2 inhibition abrogates pain hypersensitivity and increased pre- and postsynaptic NMDAR activity in the spinal cord caused by calcineurin inhibitors. CK2 inhibitors may represent a new therapeutic option for the treatment of CIPS.


Asunto(s)
Inhibidores de la Calcineurina , Quinasa de la Caseína II/antagonistas & inhibidores , Hiperalgesia/tratamiento farmacológico , N-Metilaspartato/fisiología , Médula Espinal/metabolismo , Tacrolimus/efectos adversos , Animales , Diclororribofuranosil Benzoimidazol/farmacología , Diclororribofuranosil Benzoimidazol/uso terapéutico , Potenciales Postsinápticos Excitadores , Hiperalgesia/metabolismo , Hiperalgesia/fisiopatología , Masculino , Potenciales Postsinápticos Miniatura , Estimulación Física , Células del Asta Posterior/metabolismo , Células del Asta Posterior/fisiopatología , Ratas Sprague-Dawley , Médula Espinal/fisiopatología , Tacto , Triazoles/farmacología , Triazoles/uso terapéutico
20.
Histochem Cell Biol ; 141(3): 243-9, 2014 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-24429832

RESUMEN

A new method is proposed which combines the high spatial resolution of transmission electron microscopy with information on the dynamics of transcription. Incorporation of two different RNA precursors was used to define a time transcription window on cultured cells treated with hypometabolizing peptides which are known to modulate transcription. This procedure allows detecting a single fibril of newly synthesized RNA in the time range in which it is transcribed.


Asunto(s)
Leucina Encefalina-2-Alanina/farmacología , Precursores del ARN/química , ARN Ribosómico/genética , Transcripción Genética/genética , Línea Celular Tumoral , Núcleo Celular , Proliferación Celular , Dactinomicina/farmacología , Diclororribofuranosil Benzoimidazol/farmacología , Leucina Encefalina-2-Alanina/análogos & derivados , Células HeLa , Humanos , Inmunohistoquímica/métodos , Microscopía Electrónica de Transmisión/métodos , Precursores del ARN/genética , ARN Ribosómico/biosíntesis , Coloración y Etiquetado/métodos , Transcripción Genética/efectos de los fármacos , Uridina/análogos & derivados , Uridina/química
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