Next-generation sequencing data show rapid radiation and several long-distance dispersal events in early Costaceae.

The monocot family Costaceae Nakai consists of seven genera but their mutual relationships have not been satisfactorily resolved in previous studies employing classical molecular markers. Phylogenomic analyses of 365 nuclear genes and nearly-complete plastome data provide almost fully resolved insights into their diversification. Paracostus is identified as sister to all other taxa, followed by several very short branches leading to discrete lineages, suggesting an ancient rapid radiation of these early lineages and leaving the exact relationships among them unresolved. Relationships among Chamaecostus, Dimerocostus and Monocostus confirmed earlier findings that these genera form a monophyletic group. The Afro-American Costus is also monophyletic. By contrast, Tapeinochilos appeared as a well-supported crown lineage of Cheilocostus rendering it paraphyletic. As these two genera differ morphologically from one another owing to a shift from insect- to bird-pollination, we propose to keep both names. The divergence time within Costaceae was estimated using penalized likelihood utilizing two fossils within Zingiberales, †Spirematospermum chandlerae and †Ensete oregonense, indicated a relatively recent diversification of Costaceae, between 18 and 9 Mya. Based on these data, the current pantropical distribution of the family is hypothesized to be the result of several long-distance intercontinental dispersal events, which do not correlate with global geoclimatic changes.

Molecular characterization of Canna yellow streak virus with divergent coat protein N-terminal fragment in Iraq.

BACKGROUND: Canna yellow streak virus (CaYSV, family Potyviridae) infects many canna cultivars, which have been widely cultivated in the Iraqi gardens for ornamental purposes. The genetic variability within multiple genomic regions of CaYSV population has been demonstrated in the 3' part, particularly in the coat protein (CP). This work was aimed to characterize CaYSV and investigate its variability from canna plants in Iraq. METHOD AND RESULTS: Leaves of canna plants grown in several gardens in Baghdad were tested by potyvirus group antibodies and RT-PCR. Analysis of the nucleotide (nt) sequences corresponding to the 3' part of the virus genome revealed the highest identity (81.6-90.6%) with known CaYSV isolates. Phylogenetic analysis of the coat protein (CP) gene sequence placed the Iraqi isolates in a separate clade with members of group A. This distinction was evidenced by unique amino acid changes found within the N-terminal motif of the CP. This is the first report of phylogenetically distinct CaYSV in Iraq. CONCLUSIONS: This is the first report of phylogenetically distinct CaYSV with divergent CP N-terminus in Iraq.

One-Step Reverse-Transcription Loop-Mediated Isothermal Amplification (RT-LAMP) Assay for the Detection of Canna Yellow Streak Virus.

Canna yellow streak virus (CaYSV) is a potyvirus that causes severe damage to the ornamental plant canna in the United Kingdom and Brazil. Here, we identified CaYSV in China by isolating total RNA from an infected plant, amplifying the virus genome segments, and cloning and sequencing the amplicons. After assembly, the full-length genome of the virus was obtained and uploaded to the NCBI database. Phylogenetic analysis results showed that the Guizhou isolate (OL546222) was most closely related to the KS isolate (MG545919.1). Virus detection is essential for virus disease control but the subclinical infection of CaYSV on canna in its early development increases the difficulty of CaYSV diagnosis. The goal of this study was to develop an efficient method for detection of CaYSV. We designed the primers, optimized the reaction conditions, and finally established a one-step reverse-transcription loop-mediated isothermal amplification (RT-LAMP) method. The product of RT-LAMP can be analyzed by both agarose gel electrophoresis and visible color change. The established one-step RT-LAMP assay showed high specificity and sensitivity in detecting CaYSV. This RT-LAMP method was also applied in analysis of 61 field samples collected from Guizhou and Jiangsu Provinces. The results showed that the infection rates of CaYSV on canna samples from these two provinces were very high (63 and 96% respectively).

Resistance evaluation of Canna indica, Cyperus papyrus, Iris sibirica, and Typha latifolia to phytotoxic characteristics of diluted tequila vinasses in wetland microcosms.

Tequila vinasse has a high contaminating capacity due to its physicochemical characteristics. Efficient and low-cost alternative treatments are required to reduce and control the environmental impacts caused by raw vinasse discharges, mainly from micro and small factories. One option is wetland technologies in which vegetation plays an important role in the proper functioning of the system; thus, the species to be used must be properly selected based on their resistance and tolerance to the toxic effects of vinasse. Therefore, this study aims to evaluate the resistance of four macrophyte species to tequila vinasse in wetland microcosms that is, Canna indica, Cyperus papyrus, Iris sibirica, and Typha latifolia which were exposed to 5, 7, 10, 12, and 15% of vinasse diluted with domestic wastewater. The control parameters (relative content, evapotranspiration, pH, electrical conductivity, and apparent color) showed that the plants in general developed stress symptoms. However, statistical analysis revealed a significant difference (p < 0.05) between plant species and vinasse treatments, further evidencing that I. sibirica is the species with the greatest potential to be used as emergent vegetation in treatment wetlands for the purification of tequila vinasse.

The novelty of this study lies in the fact that different species of macrophytes have been evaluated to find those with the capacity to resist the physicochemical characteristics of tequila vinasses; corroborating that there are more appropriate species than others. I. sibirica stood out mainly based on its better physiological response to the Relative Chlorophyll Content, which is the most important parameter for the evaluation of plant health. In this way, the results of this study will allow the evaluation of different types of constructed wetlands for the treatment of tequila vinasse. The knowledge generated is useful for treating other distillery stillages around the world with wetland technology.

Comparative Chloroplast Genomics of 21 Species in Zingiberales with Implications for Their Phylogenetic Relationships and Molecular Dating.

Zingiberales includes eight families and more than 2600 species, with many species having important economic and ecological value. However, the backbone phylogenetic relationships of Zingiberales still remain controversial, as demonstrated in previous studies, and molecular dating based on chloroplast genomes has not been comprehensively studied for the whole order. Herein, 22 complete chloroplast genomes from 21 species in Zingiberales were sequenced, assembled, and analyzed. These 22 genomes displayed typical quadripartite structures, which ranged from 161,303 bp to 163,979 bp in length and contained 111-112 different genes. The genome structures, gene contents, simple sequence repeats, long repeats, and codon usage were highly conserved, with slight differences among these genomes. Further comparative analysis of the 111 complete chloroplast genomes of Zingiberales, including 22 newly sequenced ones and the remaining ones from the national center for biotechnology information (NCBI) database, identified three highly divergent regions comprising ccsA, psaC, and psaC-ndhE. Maximum likelihood and Bayesian inference phylogenetic analyses based on chloroplast genome sequences found identical topological structures and identified a strongly supported backbone of phylogenetic relationships. Cannaceae was sister to Marantaceae, forming a clade that was collectively sister to the clade of (Costaceae, Zingiberaceae) with strong support (bootstrap (BS) = 100%, and posterior probability (PP) = 0.99-1.0); Heliconiaceae was sister to the clade of (Lowiaceae, Strelitziaceae), then collectively sister to Musaceae with strong support (BS = 94-100%, and PP = 0.93-1.0); the clade of ((Cannaceae, Marantaceae), (Costaceae, Zingiberaceae)) was sister to the clade of (Musaceae, (Heliconiaceae, (Lowiaceae, Strelitziaceae))) with robust support (BS = 100%, and PP = 1.0). The results of divergence time estimation of Zingiberales indicated that the crown node of Zingiberales occurred approximately 85.0 Mya (95% highest posterior density (HPD) = 81.6-89.3 million years ago (Mya)), with major family-level lineages becoming from 46.8 to 80.5 Mya. These findings proved that chloroplast genomes could contribute to the study of phylogenetic relationships and molecular dating in Zingiberales, as well as provide potential molecular markers for further taxonomic and phylogenetic studies of Zingiberales.

Uptake, accumulation, and degradation of dibutyl phthalate by three wetland plants.

The uptake and degradation mechanisms of dibutyl phthalate (DBP) by three wetland plants, namely Lythrum salicaria, Thalia dealbata, and Canna indica, were studied using hydroponics. The results revealed that exposure to DBP at 0.5 mg/L had no significant effect on the growth of L. salicaria and C. indica but inhibited the growth of T. dealbata. After 28 days, DBP concentrations in the roots of L. salicaria, T. dealbata, and C. indica were 8.74, 5.67, and 5.46 mg/kg, respectively, compared to 2.03-3.95 mg/kg in stems and leaves. Mono-n-butyl phthalate concentrations in L. salicaria tissues were significantly higher than those in the other two plants at 23.1, 15.0, and 13.6 mg/kg in roots, stems, and leaves, respectively. The roots of L. salicaria also had the highest concentration of phthalic acid, reaching 2.45 mg/kg. Carboxylesterase, polyphenol oxidase, and superoxide dismutase may be the primary enzymes involved in DBP degradation in wetland plants. The activities of these three enzymes exhibited significant changes in plant tissues. The findings suggest L. salicaria as a potent plant for phytoremediation and use in constructed wetlands for the treatment of DBP-contaminated wastewater.

Heavy metals and nutrients removal in a batch-fed greywater treatment system planted with Canna indica and Oryza sativa L.

The objective of this investigation was to determine whether Canna indica and Oryza sativa L. plants have the phytoremediation potential for removing heavy metals and nutrients from greywater treated in batch-fed Horizontal sub-surface Flow Constructed Wetlands (HssFCW). The HssFCW had a Hydraulic Retention Time (HRT) and organic loading rate (OLR) of 3 days and 3.96 (g.BOD/m2.day) respectively. Greywater (GW) samples were characterized for electrical conductivity (EC), total nitrogen (TN), total phosphorous (TP), pH, sodium adsorption ratio (SAR), metals (Al, Fe, Mg, Ca) and Biochemical Oxygen Demand (BOD5). The accumulation of metals in the soil and edible parts of plants was evaluated in terms of bioconcentration and translocation factors. Metal concentrations were determined using an atomic absorption spectrometer, while nutrients were by colorimetric method. The result shows that the metals and nutrients were below the WHO allowable limit for treated greywater recycling in agriculture. Nutrient removal was insignificantly different while metal removal was significantly different in the constructed wetlands (CW). The results indicated that C. indica is preferred as a perennial plant with unlimited metal accumulation and high nutrient removals compare to O. sativa L. with a high metal concentration in the above-ground plant tissue and also an annual plant.

Phytotoxic Effects of Tetracycline and its Removal Using Canna indica in a Hydroponic System.

Wetland plants are gaining interest as potential agents for removing emerging contaminants. However, there have been limited studies examining the ability of these plant species to remove antibiotics and their tolerance to stress. This study aimed to investigate the potential of Canna indica, an indigenous wetland plant species in India, for tetracycline-induced oxidative stress, antioxidant activity, and removal of antibiotics from nutrient media and domestic wastewater. Canna indica exhibited a removal rate of approximately 91.05 ± 0.18% for tetracycline in antibiotic containing nutrient media and 87.97 ± 0.39% in domestic wastewater. Notably, the exposure to the drug during the 30 d reaction period led to the accumulation of reactive oxygen species in the plant tissues. Consequently, there was a decline in chlorophyll content, alongside an increase in antioxidant activity, membrane permeability, and K + ion leakage. These findings emphasize the importance of monitoring tolerance levels induced by antibiotics in plant species. Thus, monitoring the antibiotic-induced-tolerance levels in plant species is crucial for maintaining plant health and effectively managing abiotic stress, ensuring efficient recovery and facilitating an effective wetland treatment system.

Different ratios of Canna indica and maize-vermicompost as biofertilizers to improve soil fertility and plant growth: A case study from southwest China.

Vermicomposting is recommended as an eco-friendly technology for an organic amendment to avoid the excessive use of inorganic fertilizers, which are causing environmental pollution. Here, this study evaluated soil fertility and plant growth after vermicompost amendment using reclaimed wetland plants and manure. A pot experiment was conducted to assess the seven treatments for nutrient recovery and plant growth: a control group without any fertilization (CK); four groups with vermicompost prepared from different ratios of ecological wetland plant residues, maize, and pig manure (V1, 4:6; V2, 5:5; V3, 6:6; and V4, 7:3); one group with only Canna indica (V5, Ci), and a group with synthetic fertilizers (NPK). The results showed the remarkable impacts of Ci-vermicompost and different ratios of organic fertilizer on soil fertility and plant height (28.8%) as major outcomes. In addition, vermicompost substantially increased soil total nitrogen (60.5%), soil organic matter (60.9%) including dissolved organic carbon (52.2%), and shoot biomass (V4, three-fold increase) compared with NPK and CK. Overall, the findings of this study suggest that vermicomposting combined with wetland plants is a feasible method for organic amendments and offers an innovative approach for recycling ecological waste to produce nutrient-rich organic fertilizers, reduce environmental damage, and improve crop production.

Cr, Ni, and Zn removal from landfill leachate using vertical flow wetlands planted with Typha domingensis and Canna indica.

Chromium (Cr), Nickel (Ni), and zinc (Zn) removal from landfill leachate using mesocosm-scale vertical flow wetlands, the effect of recirculation, and the ability of macrophytes to retain metals were evaluated. Wetlands were filled with coarse sand and light expanded clay aggregates and planted with Typha domingensis or Canna indica. Wetlands were operated using intermittent loading, with and without recirculation. Raw leachate was diluted and spiked with metals to reach the following concentrations: 0.2 mg L-1 Cr , 0.2 mg L-1 Ni, and0.2 mg L-1 Zn and 1.0 mg L-1 Cr, 1.0 mg L-1 Ni, and 1.0 mg L-1 Zn. Wetlands planted with T. domingensis presented higher metal removal than those planted with C. indica. Recirculation enhanced metal removal efficiencies significantly, being for T. domingensis/C. indica: 60/54, 49/47, 61/47% for Cr, Ni, and Zn at 0.2 mg L-1, and 80/71, 76/62, 73/59% for Cr, Ni, and Zn at 1.0 mg L-1, respectively. Metals were efficiently retained by macrophytes. Plant biomass and metal concentrations in roots were significantly higher than in shoots. Scanning electron microscopy and X-ray microanalysis showed that metals were absorbed by internal root tissues. A hybrid wetland planted with T. domingensis may be implemented to improve not only metal but also chemical oxygen demand and total nitrogen removals.

Performance of Canna Indica based microscale vertical flow constructed wetland under tropical conditions for domestic wastewater treatment.

Constructed wetlands (CWs) have great potential as low-cost natural wastewater treatment in developing countries. The present study appraises the performance of the vertical flow constructed wetland for domestic wastewater treatment. More specifically, the potential of Canna Indica in the removal of carbon, nitrogen, and phosphorus (CNP) from wastewater under tropical conditions. CW cell was fabricated with a vegetative layer of Canna Indica and tested with domestic wastewater. Based on the test results, Canna Indica shows a high Removal Efficiency (RE) of Chemical Oxygen Demand (COD), Biological Oxygen Demand (BOD5) on the order of 87% and 91%, respectively. Similarly, nutrients removal efficiency for total nitrogen (TN), total phosphorus (TP) was found to be 97% and 98%, respectively. The investigation also revealed that there is considerable removal of sulfates with efficiency equal to 78.4%. Overall, the Canna Indica based CWs were found to be suitable for wastewater treatment in the tropical regions, provided a viable medium for treating the wastewater in peri-urban and rural areas of developing countries.

This study investigates the performance of Canna indica based vertical flow wetlands for greywater treatment. The study investigates the results at different hydraulic retention times and loading rates.There are no much studies reporting the performance of this variety of plant species under a tropical humid climate.The results from the study can encourage adoption of this plant variety, indigenous to this part of the country, for wastewater treatmentHighlightsIt could emphasize the importance of familiarity with constructed wetlands to comprehend the RE of various climatic zones.It is possible to highlight the Canna-based CW's efficiency in removing organics and nutrients from domestic wastewater.The possibility for field-scale Canna-based CW to remove pollution in tropical climates was investigated, andDecentralization of wastewater treatment at the household level to apply CWs that will improve wastewater quality.

ICTV Virus Taxonomy Profile: Nanoviridae.

Nanoviridae is a family of plant viruses (nanovirids) whose members have small isometric virions and multipartite, circular, single-stranded (css) DNA genomes. Each of the six (genus Babuvirus) or eight (genus Nanovirus) genomic DNAs is 0.9-1.1 kb and is separately encapsidated. Many isolates are associated with satellite-like cssDNAs (alphasatellites) of 1.0-1.1 kb. Hosts are eudicots, predominantly legumes (genus Nanovirus), and monocotyledons, predominantly in the order Zingiberales (genus Babuvirus). Nanovirids require a virus-encoded helper factor for transmission by aphids in a circulative, non-propagative manner. This is a summary of the ICTV Report on the family Nanoviridae, which is available at ictv.global/report/nanoviridae.

Antifungal activity of extracts and purified saponins from the rhizomes of Chamaecostus cuspidatus against Candida and Trichophyton species.

AIM: To evaluate the antifungal activity of extracts of Chamaecostus cuspidatus against Candida and Trichophyton species. METHODS AND RESULTS: Crude ethanol extracts of leaves, stems and rhizomes were prepared and evaluated for antimicrobial activity. Only the rhizomes extract (RE) showed antifungal activity but had no inhibitory effect against bacteria (Staphylococcus aureus and Escherichia coli). The RE was then submitted to liquid-liquid partition with hexane (Hex), dichloromethane, chloroform, ethyl acetate and water. The Hex fraction (Hex Fr) from the RE was found to have the best antifungal effect. Three known saponins were isolated from the Hex Fr, of which two (dioscin and aferoside A) showed good antifungal activity. In addition, Hex Fr and the two bioactive compounds had no antibacterial effect, but exhibited fungicidal activity, caused significant changes in the morphology of the fungal cells and showed anti-Candida albicans biofilm activity. Finally, the bioactive plant products presented greater selectivity for fungal cells over normal human cells. CONCLUSIONS: The rhizomes of C. cuspidatus have bioactive saponins that function as effective antifungals against Candida and Trichophyton species, and have antibiofilm activity against C. albicans. SIGNIFICANCE AND IMPACT OF THE STUDY: Chamaecostus cuspidatus REs may have potential clinical application towards the management of superficial mycoses caused by Candida and Trichophyton species.

Why pendulum symmetry is absent from the cymose partial inflorescences of Cannaceae? Insights into the essential characteristic of cincinni.

In a typical cincinnus, the neighboring two flowers are generally enantiomorphic, which leads to the pendulum symmetry of the entire cyme. While in a two-flowered Cannaceae cincinnus, the flowers develop the same chirality. In this study, we observed several abnormal cincinni of Canna indica that extended longer than their normal form, which presented a second enantiomorphic flower, thus reflecting a typical pendulum symmetry. The chirality change of the second flower was strongly associated with the position of the lateral cincinnus meristem, which determines the angle size of the cincinnus zigzag shift and may serve as a key factor controlling the formation of pendulum symmetry. We propose that alternating floral chirality and the concomitant pendulum symmetry are the essential characteristics of a typical cincinnus. Accordingly, Canna flowers with the same chirality are arranged in modified cincinni.

Comparison of heavy metal and nutrients removal in Canna indica and Oryza sativa L. based constructed wetlands for piggery effluent treatment in north-central Nigeria.

Batch-fed horizontal sub-surface flow constructed wetlands (HssFCW) were developed to compare the potential of Canna indica and Oryza sativa L. in removing heavy metals and nutrients from piggery effluent. Piggery effluent samples were characterized for nutrients (N and P) and metals (Mg, Al, Ca and Fe) before and after introducing them to the HssFCW with hydraulic retention time (HRT) of 3 days and operational flowrate of 0.014 m3/day. Three sets of constructed wetlands (CWs) were monitored during the dry season for 3 months. The bioconcentration factor (BCF) and translocation factor (TF) for the plants were evaluated. The results were all significantly different at p ≤ 0.05. O. sativa L removes more nutrients and metals than C. indica. The BCF for O. sativa L. was higher than for C. indica, while the TF for C. indica was higher for O. sativa L., indicating a higher metal translocation potential. Use of C. indica, a non-food crop, poses no health risks in HssFCWs whereas the grains of O. sativa L. are consumed directly by humans, presenting potential risks when used in HssFCWs. Compared to an annual O. sativa L., the perennial C. indica can be grown continuously in CWs for the phytoremediation of piggery effluent. Novelty statementNo known work about the phytoremediation potential of the two studied macrophytes in the agro-ecological zone is known. The study also provides insight into the bioconcentration of metals in the edible part of Oryza sativa L. FARO 44 (SIPI 692033).The characterization of piggery effluent revealed that its compositions were above the allowable limit for reuse and recycling despite the adoption of low-water use intensive method.The study showed that Oryza sativa L accumulates more metals in the above-ground tissues than in its root and provide insight into its use as a phytoremediation plant in the study area.The footprint of pollutants and metals in Oryza sativa L makes a perennial C. indica more suitable than O. sativa L. in piggery effluent phytoremediation.

Inhibitory effect of lignin from Canna edulis Ker residues on trypsin: kinetics and molecular docking studies.

BACKGROUND: Lignin extracted from Canna edulis Ker residues shows a strong inhibitory effect on α-glucosidase and a promoting effect on α-amylase. Protease activity inhibition may play a key role in disease processes, such as metastasis, tumor invasion and bacterial colonization. Hence, in the present study, the inhibitory mechanism of lignin on trypsin was examined, including the interaction type, thermodynamic parameters, structure, reaction site and molecular docking. RESULTS: The isolated lignin presented an inhibitory effect on trypsin activity with an IC50 value of 1.35 µmol L-1 . This inhibition was a mixed linear type with a constant Ki of 3.92 µmol L-1 . The lignin could bind with the key amino acid residue Ser195 on the active site of the trypsin molecule to inhibit its activity, and the phenolic hydroxyl group and -OH on the ß-O-4 structure of the lignin molecule were the major groups bound with trypsin. CONCLUSION: These results illustrate the inhibitory effects of Canna edulis residue lignin on protease, which helps with respect to understanding the possible application of lignin in the food industry in functional foods. © 2020 Society of Chemical Industry.

A specific gut microbiota and metabolomic profiles shifts related to antidiabetic action: The similar and complementary antidiabetic properties of type 3 resistant starch from Canna edulis and metformin.

The relationship between gut microbiota and type 2 diabetes mellitus (T2DM) has drawn increasing attention, and the benefits of various treatment strategies, including nutrition, medication and physical exercise, maybe microbially-mediated. Metformin is a widely used hypoglycemic agent, while resistant starch (RS) is a novel dietary fiber that emerges as a nutritional strategy for metabolic disease. However, it remains unclear as to the potential degree and interactions among gut microbial communities, metabolic landscape, and the anti-diabetic effects of metformin and RS, especially for a novel type 3 resistant starch from Canna edulis (Ce-RS3). In the present study, T2DM rats were administered metformin or Ce-RS3, and the changes in gut microbiota and serum metabolic profiles were characterized using 16S-rRNA gene sequencing and metabolomics, respectively. After 11 weeks of treatment, Ce-RS3 exhibited similar anti-diabetic effects to those of metformin, including dramatically reducing blood glucose, ameliorating the response to insulin resistance and glucose tolerance test, and relieving the pathological damage in T2DM rats. Interestingly, the microbial and systemic metabolic dysbiosis in T2DM rats was effectively modulated by both Ce-RS3 and, to a lesser extent, metformin. The two treatments increased the gut bacterial diversity, and supported the restoration of SCFA-producing bacteria, thereby significantly increasing SCFAs levels. Both treatments simultaneously corrected 16 abnormal metabolites in the metabolism of lipids and amino acids, many of which are microbiome-related. PICRUSt analysis and correlation of SCFAs levels with metabolomics data revealed a strong association between gut microbial and host metabolic changes. Strikingly, Ce-RS3 exhibited better efficacy in increasing gut microbiota diversity with a peculiar enrichment of Prevotella genera. The gut microbial properties of Ce-RS3 were tightly associated with the T2DM-related indexes, showing the potential to alleviate diabetic phenotype dysbioses, and possibly explaining the greater efficiency in improving metabolic control. The beneficial effects of Ce-RS3 and metformin might derive from changes in gut microbiota through altering host-microbiota interactions with impact on the host metabolome. Given the complementarity of Ce-RS3 and metformin in regulation of gut microbiota and metabolites, this study also prompted us to suggest possible "Drug-Dietary fiber" combinations for managing T2DM.

Potential use of floating treatment wetlands established with Canna flaccida for removing organic contaminants from surface water.

Surface water bodies worldwide may be contaminated with various organic contaminants. In many cases, the actual toxicity thresholds to nontarget organisms are unknown, thus presenting unknown risks. This study evaluated the potential use of floating treatment wetlands (FTWs) planted with Canna flaccida (common name: Canna) for removing two pharmaceuticals (acetaminophen and carbamazepine) and one herbicide (atrazine) from contaminated water. Triplicate FTWs with varying plant densities were established in 378 L mesocosms. After dosing the mesocosms with the contaminants, water samples were collected over a 12-week period for analysis. The planted FTWs showed differing abilities for removing acetaminophen, atrazine, and carbamazepine. Plant densities on the FTWs did not affect dissipation of acetaminophen or atrazine, but did carbamazepine. All acetaminophen residues were removed from the water within 2 weeks, while all atrazine residues were removed within 12 weeks. Approximately, 79-92% of these residues removed were associated with the FTWs. In contrast, all of the carbamazepine was not removed after 12 weeks, at which time only 29-36.7% of the total removed was associated with the FTWs. Overall results suggest that FTWs established with C. flaccida are promising for removing trace concentrations of acetaminophen, atrazine, and carbamazepine from surface water.

Characterization of a highly divergent Sugarcane mosaic virus from Canna indica L. by deep sequencing.

BACKGROUND: Cannas are popular ornamental plants and widely planted for the beautiful foliage and flower. Viral disease is a major threaten to canna horticulture industry. In the city of Beijing, mosaic disease in canna was frequently observed, but the associated causal agent and its biological characterization is still unknown. RESULTS: After small RNA deep sequencing, 36,776 contigs were assembled and 16 of them shared high sequence identities with the different proteins of Sugarcane mosaic virus (SCMV) of the size ranging from 86 to 1911 nt. The complete genome of SCMV isolate (canna) was reconstructed by sequencing all cDNA clones obtained from RT-PCR and 5'\3' RACE amplifications. SCMV-canna isolate showed to have a full RNA genome of 9579 nt in length and to share 78% nt and 85% aa sequence identities with SCMV isolates from other hosts. The phylogenetic tree constructed based on the full genome sequence of SCMV isolates allocated separately the canna-isolate in a distinct clade, indicating a new strain. Recombination analyses demonstrated that SCMV-canna isolate was a recombinant originating from a sugarcane-infecting isolate (major parent, acc. no. AJ310103) and a maize-infecting isolate (minor parent, acc. no. AJ297628). Pathogenicity test showed SCMV-canna could cause typical symptoms of mosaic and necrosis in some tested plants with varying levels of severity but was less virulent than the isolate SCMV-BJ. Field survey showed that the virus was widely distributed. CONCLUSIONS: This study identified SCMV as the major agent causing the prevalent mosaic symptom in canna plants in Beijing and its genomic and biological characterizations were further explored. All these data enriched the knowledge of the viruses infecting canna and would be helpful in effective disease management in canna.

Commelinid Monocotyledon Lignins Are Acylated by p-Coumarate.

Commelinid monocotyledons are a monophyletic clade differentiated from other monocotyledons by the presence of cell wall-bound ferulate and p-coumarate. The Poaceae, or grass family, is a member of this group, and most of the p-coumarate in the cell walls of this family acylates lignin. Here, we isolated and examined lignified cell wall preparations from 10 species of commelinid monocotyledons from nine families other than Poaceae, including species from all four commelinid monocotyledon orders (Poales, Zingiberales, Commelinales, and Arecales). We showed that, as in the Poaceae, lignin-linked p-coumarate occurs exclusively on the hydroxyl group on the γ-carbon of lignin unit side chains, mostly on syringyl units. Although the mechanism of acylation has not been studied directly in these species, it is likely to be similar to that in the Poaceae and involve BAHD acyl-coenzyme A:monolignol transferases.