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LOCUST: a custom sequence locus typer for classifying microbial isolates.
Brinkac, Lauren M; Beck, Erin; Inman, Jason; Venepally, Pratap; Fouts, Derrick E; Sutton, Granger.
Affiliation
  • Brinkac LM; J. Craig Venter Institute, Rockville, MD, USA.
  • Beck E; Department of Biotechnology and Food Technology, Durban University of Technology, Durban, South Africa.
  • Inman J; J. Craig Venter Institute, Rockville, MD, USA.
  • Venepally P; J. Craig Venter Institute, Rockville, MD, USA.
  • Fouts DE; J. Craig Venter Institute, Rockville, MD, USA.
  • Sutton G; J. Craig Venter Institute, Rockville, MD, USA.
Bioinformatics ; 33(11): 1725-1726, 2017 Jun 01.
Article in En | MEDLINE | ID: mdl-28130240
SUMMARY: LOCUST is a custom sequence locus typer tool for classifying microbial genomes. It provides a fully automated opportunity to customize the classification of genome-wide nucleotide variant data most relevant to biological research. AVAILABILITY AND IMPLEMENTATION: Source code, demo data, and detailed documentation are freely available at http://sourceforge.net/projects/locustyper . CONTACT: lbrinkac@jcvi.org. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Subject(s)

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Bacteria / Software / Genome, Bacterial / Sequence Analysis, DNA / Molecular Typing Language: En Journal: Bioinformatics Journal subject: INFORMATICA MEDICA Year: 2017 Type: Article Affiliation country: United States

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Bacteria / Software / Genome, Bacterial / Sequence Analysis, DNA / Molecular Typing Language: En Journal: Bioinformatics Journal subject: INFORMATICA MEDICA Year: 2017 Type: Article Affiliation country: United States