Inferring time series chromatin states for promoter-enhancer pairs based on Hi-C data.

Miko, Henriette; Qiu, Yunjiang; Gaertner, Bjoern; Sander, Maike; Ohler, Uwe

Miko, Henriette; Qiu, Yunjiang; Gaertner, Bjoern; Sander, Maike; Ohler, Uwe.

Affiliation

Miko H; Berlin Institute for Medical Systems Biology, Max Delbrück Center for Molecular Medicine, 13125, Berlin, Germany.
Qiu Y; Department of Computer Science, Humboldt-Universität zu Berlin, 10117, Berlin, Germany.
Gaertner B; Ludwig Institute for Cancer Research, La Jolla, CA, 92093, USA.
Sander M; Bioinformatics and Systems Biology Graduate Program, University of California San Diego, La Jolla, CA, 92093, USA.
Ohler U; Department of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, 92093, USA.

BMC Genomics ; 22(1): 84, 2021 Jan 28.

Article in En | MEDLINE | ID: mdl-33509077

Subject(s)

Chromatin; Enhancer Elements, Genetic; Bayes Theorem; Chromatin/genetics; Chromosomes; Promoter Regions, Genetic

Key words

Chromatin immunoprecipitation; Differentiation; Enhancer; Gene regulation; Hi-C; Histone modifications

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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Chromatin / Enhancer Elements, Genetic Language: En Journal: BMC Genomics Journal subject: GENETICA Year: 2021 Type: Article Affiliation country: Germany

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