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TPM, FPKM, or Normalized Counts? A Comparative Study of Quantification Measures for the Analysis of RNA-seq Data from the NCI Patient-Derived Models Repository.
Zhao, Yingdong; Li, Ming-Chung; Konaté, Mariam M; Chen, Li; Das, Biswajit; Karlovich, Chris; Williams, P Mickey; Evrard, Yvonne A; Doroshow, James H; McShane, Lisa M.
Affiliation
  • Zhao Y; Biometric Research Program, Division of Cancer Treatment and Diagnosis, National Cancer Institute, Rockville, MD, USA.
  • Li MC; Biometric Research Program, Division of Cancer Treatment and Diagnosis, National Cancer Institute, Rockville, MD, USA.
  • Konaté MM; Biometric Research Program, Division of Cancer Treatment and Diagnosis, National Cancer Institute, Rockville, MD, USA.
  • Chen L; Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
  • Das B; Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
  • Karlovich C; Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
  • Williams PM; Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
  • Evrard YA; Leidos Biomedical Research, Inc., Frederick National Laboratory for Cancer Research, Frederick, MD, USA.
  • Doroshow JH; Division of Cancer Treatment and Diagnosis, National Cancer Institute, Bethesda, MD, USA.
  • McShane LM; Biometric Research Program, Division of Cancer Treatment and Diagnosis, National Cancer Institute, Rockville, MD, USA. mcshanel@ctep.nci.nih.gov.
J Transl Med ; 19(1): 269, 2021 06 22.
Article in En | MEDLINE | ID: mdl-34158060
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: RNA / High-Throughput Nucleotide Sequencing Type of study: Prognostic_studies Limits: Humans Language: En Journal: J Transl Med Year: 2021 Type: Article Affiliation country: United States
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: RNA / High-Throughput Nucleotide Sequencing Type of study: Prognostic_studies Limits: Humans Language: En Journal: J Transl Med Year: 2021 Type: Article Affiliation country: United States