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Estimation of site frequency spectra from low-coverage sequencing data using stochastic EM reduces overfitting, runtime, and memory usage.
Rasmussen, Malthe Sebro; Garcia-Erill, Genís; Korneliussen, Thorfinn Sand; Wiuf, Carsten; Albrechtsen, Anders.
Affiliation
  • Rasmussen MS; Department of Biology, University of Copenhagen, 2200 København N, Denmark.
  • Garcia-Erill G; Department of Biology, University of Copenhagen, 2200 København N, Denmark.
  • Korneliussen TS; Globe Institute, University of Copenhagen, 1350 København K, Denmark.
  • Wiuf C; Department of Mathematical Sciences, University of Copenhagen, 2100 København Ø, Denmark.
  • Albrechtsen A; Department of Biology, University of Copenhagen, 2200 København N, Denmark.
Genetics ; 222(4)2022 11 30.
Article in En | MEDLINE | ID: mdl-36173322
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Algorithms / Genetics, Population Language: En Journal: Genetics Year: 2022 Type: Article Affiliation country: Denmark
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Algorithms / Genetics, Population Language: En Journal: Genetics Year: 2022 Type: Article Affiliation country: Denmark