Your browser doesn't support javascript.
loading
Collection and curation of prokaryotic genome assemblies from type strains at NCBI.
Kannan, Sivakumar; Sharma, Shobha; Ciufo, Stacy; Clark, Karen; Turner, Seán; Kitts, Paul A; Schoch, Conrad L; DiCuccio, Michael; Kimchi, Avi.
Affiliation
  • Kannan S; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 9600 Rockville Pike, Bethesda, MD, 20892, USA.
  • Sharma S; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 9600 Rockville Pike, Bethesda, MD, 20892, USA.
  • Ciufo S; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 9600 Rockville Pike, Bethesda, MD, 20892, USA.
  • Clark K; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 9600 Rockville Pike, Bethesda, MD, 20892, USA.
  • Turner S; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 9600 Rockville Pike, Bethesda, MD, 20892, USA.
  • Kitts PA; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 9600 Rockville Pike, Bethesda, MD, 20892, USA.
  • Schoch CL; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 9600 Rockville Pike, Bethesda, MD, 20892, USA.
  • DiCuccio M; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 9600 Rockville Pike, Bethesda, MD, 20892, USA.
  • Kimchi A; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, 9600 Rockville Pike, Bethesda, MD, 20892, USA.
Int J Syst Evol Microbiol ; 73(1)2023 Feb.
Article in En | MEDLINE | ID: mdl-36748495
ABSTRACT
The public sequence databases are entrusted with the dual responsibility of providing an accessible archive to all submitters and supporting data reliability and its re-use to all users. Genomes from type materials can act as an unambiguous reference for a taxonomic name and play an important role in comparative genomics, especially for taxon verification or reclassification. The National Center for Biotechnology Information (NCBI) collects and curates information on prokaryotic type strains and genomes from type strains. The average nucleotide identity (ANI)-based quality control processes introduced at NCBI to verify the genomes from type strains and improve related sequence records are detailed here. Using the curated genomes from type strains as reference, the taxonomy of over 1.1 million GenBank genomes were verified and the taxonomy of over 7000 new submissions before acceptance to GenBank and over 1800 existing genomes in GenBank were reclassified.
Subject(s)
Key words
Fulltext
Print
XML
PubMed Links
Search on Google

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Databases, Nucleic Acid / Fatty Acids Language: En Journal: Int J Syst Evol Microbiol Journal subject: MICROBIOLOGIA Year: 2023 Type: Article Affiliation country: United States
Fulltext
Print
XML
PubMed Links
Search on Google

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Databases, Nucleic Acid / Fatty Acids Language: En Journal: Int J Syst Evol Microbiol Journal subject: MICROBIOLOGIA Year: 2023 Type: Article Affiliation country: United States