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Evaluation of Mycobacterium tuberculosis enrichment in metagenomic samples using ONT adaptive sequencing and amplicon sequencing for identification and variant calling.
Su, Junhao; Lui, Wui Wang; Lee, YanLam; Zheng, Zhenxian; Siu, Gilman Kit-Hang; Ng, Timothy Ting-Leung; Zhang, Tong; Lam, Tommy Tsan-Yuk; Lao, Hiu-Yin; Yam, Wing-Cheong; Tam, Kingsley King-Gee; Leung, Kenneth Siu-Sing; Lam, Tak-Wah; Leung, Amy Wing-Sze; Luo, Ruibang.
Affiliation
  • Su J; Department of Computer Science, The University of Hong Kong, Pok Fu Lam, Hong Kong SAR, China.
  • Lui WW; Department of Computer Science, The University of Hong Kong, Pok Fu Lam, Hong Kong SAR, China.
  • Lee Y; Department of Computer Science, The University of Hong Kong, Pok Fu Lam, Hong Kong SAR, China.
  • Zheng Z; Department of Computer Science, The University of Hong Kong, Pok Fu Lam, Hong Kong SAR, China.
  • Siu GK; Department of Health Technology and Informatics, Faculty of Health and Social Sciences, The Hong Kong Polytechnic University, Hung Hom, Hong Kong SAR, China.
  • Ng TT; Department of Health Technology and Informatics, Faculty of Health and Social Sciences, The Hong Kong Polytechnic University, Hung Hom, Hong Kong SAR, China.
  • Zhang T; Department of Computer Science and Engineering, Department of Mathematics, The Hong Kong University of Science and Technology, Clear Water Bay, Hong Kong SAR, China.
  • Lam TT; State Key Laboratory of Emerging Infectious Diseases, School of Public Health, The University of Hong Kong, Pok Fu Lam, Hong Kong SAR, China.
  • Lao HY; Laboratory of Data Discovery for Health Limited, 19W Hong Kong Science & Technology Parks, Pak Shek Kok, Hong Kong SAR, China.
  • Yam WC; Department of Health Technology and Informatics, Faculty of Health and Social Sciences, The Hong Kong Polytechnic University, Hung Hom, Hong Kong SAR, China.
  • Tam KK; Department of Microbiology, Lee Ka Shing Faculty of Medicine, The University of Hong Kong, Pok Fu Lam, Hong Kong SAR, China.
  • Leung KS; Department of Microbiology, Lee Ka Shing Faculty of Medicine, The University of Hong Kong, Pok Fu Lam, Hong Kong SAR, China.
  • Lam TW; Department of Microbiology, Lee Ka Shing Faculty of Medicine, The University of Hong Kong, Pok Fu Lam, Hong Kong SAR, China.
  • Leung AW; Department of Computer Science, The University of Hong Kong, Pok Fu Lam, Hong Kong SAR, China.
  • Luo R; Department of Computer Science, The University of Hong Kong, Pok Fu Lam, Hong Kong SAR, China. wsleung@cs.hku.hk.
Sci Rep ; 13(1): 5237, 2023 03 31.
Article in En | MEDLINE | ID: mdl-37002338
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Nanopores / Mycobacterium tuberculosis Type of study: Diagnostic_studies / Prognostic_studies Limits: Humans Language: En Journal: Sci Rep Year: 2023 Type: Article Affiliation country: China
Fulltext
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Nanopores / Mycobacterium tuberculosis Type of study: Diagnostic_studies / Prognostic_studies Limits: Humans Language: En Journal: Sci Rep Year: 2023 Type: Article Affiliation country: China