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Performance of clinical metagenomics in France: a prospective observational study.
Fourgeaud, Jacques; Regnault, Béatrice; Ok, Vichita; Da Rocha, Nicolas; Sitterlé, Émilie; Mekouar, Meryem; Faury, Hélène; Milliancourt-Seels, Catherine; Jagorel, Florence; Chrétien, Delphine; Bigot, Thomas; Troadec, Éric; Marques, Isabelle; Serris, Alexandra; Seilhean, Danielle; Neven, Bénédicte; Frange, Pierre; Ferroni, Agnès; Lecuit, Marc; Nassif, Xavier; Lortholary, Olivier; Leruez-Ville, Marianne; Pérot, Philippe; Eloit, Marc; Jamet, Anne.
Affiliation
  • Fourgeaud J; Université Paris Cité, FETUS, Paris, France; Microbiology Department, AP-HP, Hôpital Necker, Paris, France.
  • Regnault B; Institut Pasteur, Université Paris Cité, Pathogen Discovery Laboratory, Paris, France; Bioinformatics and Biostatistics Hub, Computational Biology Department, Institut Pasteur, Paris, France.
  • Ok V; Microbiology Department, AP-HP, Hôpital Necker, Paris, France.
  • Da Rocha N; Institut Pasteur, Université Paris Cité, Pathogen Discovery Laboratory, Paris, France.
  • Sitterlé É; Microbiology Department, AP-HP, Hôpital Necker, Paris, France.
  • Mekouar M; Microbiology Department, AP-HP, Hôpital Necker, Paris, France.
  • Faury H; Microbiology Department, AP-HP, Hôpital Necker, Paris, France.
  • Milliancourt-Seels C; Microbiology Department, AP-HP, Hôpital Necker, Paris, France.
  • Jagorel F; Institut Pasteur, Université Paris Cité, Pathogen Discovery Laboratory, Paris, France.
  • Chrétien D; Institut Pasteur, Université Paris Cité, Pathogen Discovery Laboratory, Paris, France.
  • Bigot T; Bioinformatics and Biostatistics Hub, Computational Biology Department, Institut Pasteur, Paris, France.
  • Troadec É; Institut Pasteur, Université Paris Cité, Pathogen Discovery Laboratory, Paris, France.
  • Marques I; Microbiology Department, AP-HP, Hôpital Necker, Paris, France.
  • Serris A; Université Paris Cité, Centre d'Infectiologie Necker-Pasteur, IHU Imagine, Hôpital Necker, Paris, France.
  • Seilhean D; Département de Neuropathologie Raymond Escourolle, AP-HP-Sorbonne, Groupe Hospitalier Pitié-Salpêtrière, Paris, France; Institut du Cerveau-Paris Brain Institute-ICM, INSERM U1127, CNRS UMR7225, AP-HP, Sorbonne University, Pitié-Salpêtrière Hospital, Paris, France.
  • Neven B; Pediatric Hematology Immunology and Rheumatology Unit, AP-HP, Hôpital Necker, Paris, France; Université Paris Cité, INSERM, Institut Imagine, Laboratory of Immunogenetics of Pediatric Autoimmune Diseases, Paris, France.
  • Frange P; Université Paris Cité, FETUS, Paris, France; Microbiology Department, AP-HP, Hôpital Necker, Paris, France.
  • Ferroni A; Microbiology Department, AP-HP, Hôpital Necker, Paris, France.
  • Lecuit M; Université Paris Cité, Centre d'Infectiologie Necker-Pasteur, IHU Imagine, Hôpital Necker, Paris, France; Institut Pasteur, Université de Paris, INSERM U1117, Biology of Infection Unit, Paris, France; Institut Pasteur, National Reference Center and WHO Collaborating Center Listeria, Paris, France.
  • Nassif X; Université Paris Cité, CNRS, INSERM, Institut Necker-Enfants Malades, Team Pathogenesis of Systemic Infection, Paris, France.
  • Lortholary O; Université Paris Cité, Centre d'Infectiologie Necker-Pasteur, IHU Imagine, Hôpital Necker, Paris, France; Institut Pasteur, Centre National de Référence Mycoses Invasives et Antifongiques, Département de Mycologie, Labex IBEID, Paris, France.
  • Leruez-Ville M; Université Paris Cité, FETUS, Paris, France; Microbiology Department, AP-HP, Hôpital Necker, Paris, France.
  • Pérot P; Institut Pasteur, Université Paris Cité, Pathogen Discovery Laboratory, Paris, France; Institut Pasteur, Centre National de Référence Mycoses Invasives et Antifongiques, Département de Mycologie, Labex IBEID, Paris, France.
  • Eloit M; Institut Pasteur, Université Paris Cité, Pathogen Discovery Laboratory, Paris, France; Institut Pasteur, Université Paris Cité, The WOAH Collaborating Center for the Detection and Identification in Humans of Emerging Animal Pathogens, Paris, France; École Nationale Vétérinaire d'Alfort, Université P
  • Jamet A; Microbiology Department, AP-HP, Hôpital Necker, Paris, France; Université Paris Cité, CNRS, INSERM, Institut Necker-Enfants Malades, Team Pathogenesis of Systemic Infection, Paris, France. Electronic address: anne.jamet@aphp.fr.
Lancet Microbe ; 5(1): e52-e61, 2024 01.
Article in En | MEDLINE | ID: mdl-38048804
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Affect / High-Throughput Nucleotide Sequencing Limits: Humans Country/Region as subject: Europa Language: En Journal: Lancet Microbe Year: 2024 Type: Article Affiliation country: France
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Affect / High-Throughput Nucleotide Sequencing Limits: Humans Country/Region as subject: Europa Language: En Journal: Lancet Microbe Year: 2024 Type: Article Affiliation country: France