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Identifying patterns in amyotrophic lateral sclerosis progression from sparse longitudinal data.
Ramamoorthy, Divya; Severson, Kristen; Ghosh, Soumya; Sachs, Karen; Glass, Jonathan D; Fournier, Christina N; Herrington, Todd M; Berry, James D; Ng, Kenney; Fraenkel, Ernest.
Affiliation
  • Ramamoorthy D; Department of Biological Engineering, MIT, Cambridge, MA, USA.
  • Severson K; Center for Computational Health and MIT-IBM Watson AI Lab, IBM Research, Cambridge, MA, USA.
  • Ghosh S; Center for Computational Health and MIT-IBM Watson AI Lab, IBM Research, Cambridge, MA, USA.
  • Sachs K; Department of Biological Engineering, MIT, Cambridge, MA, USA.
  • Fournier CN; Department of Neurology, Emory University School of Medicine, Atlanta, GA, USA.
  • Berry JD; Department of Neurology, Massachusetts General Hospital, Boston, MA, USA.
  • Ng K; Department of Neurology, Harvard Medical School, Boston, MA, USA.
  • Fraenkel E; Department of Neurology, Massachusetts General Hospital, Boston, MA, USA.
Nat Comput Sci ; 2(9): 605-616, 2022 Sep.
Article in En | MEDLINE | ID: mdl-38177466
ABSTRACT
The clinical presentation of amyotrophic lateral sclerosis (ALS), a fatal neurodegenerative disease, varies widely across patients, making it challenging to determine if potential therapeutics slow progression. We sought to determine whether there were common patterns of disease progression that could aid in the design and analysis of clinical trials. We developed an approach based on a mixture of Gaussian processes to identify clusters of patients sharing similar disease progression patterns, modeling their average trajectories and the variability in each cluster. We show that ALS progression is frequently nonlinear, with periods of stable disease preceded or followed by rapid decline. We also show that our approach can be extended to Alzheimer's and Parkinson's diseases. Our results advance the characterization of disease progression of ALS and provide a flexible modeling approach that can be applied to other progressive diseases.
Subject(s)

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Parkinson Disease / Neurodegenerative Diseases / Amyotrophic Lateral Sclerosis Type of study: Diagnostic_studies / Prognostic_studies / Risk_factors_studies Limits: Humans Language: En Journal: Nat Comput Sci / Nat. comput. sci / Nature computational science Year: 2022 Type: Article Affiliation country: United States

Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Parkinson Disease / Neurodegenerative Diseases / Amyotrophic Lateral Sclerosis Type of study: Diagnostic_studies / Prognostic_studies / Risk_factors_studies Limits: Humans Language: En Journal: Nat Comput Sci / Nat. comput. sci / Nature computational science Year: 2022 Type: Article Affiliation country: United States