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Mechanism of formation of the C-terminal beta-hairpin of the B3 domain of the immunoglobulin binding protein G from Streptococcus. III. Dynamics of long-range hydrophobic interactions.
Lewandowska, Agnieszka; Oldziej, Stanislaw; Liwo, Adam; Scheraga, Harold A.
Afiliación
  • Lewandowska A; Laboratory of Biopolymer Structure, Intercollegiate Faculty of Biotechnology, University of Gdansk, Medical University of Gdansk, Kladki 24, 80-822 Gdansk, Poland.
Proteins ; 78(3): 723-37, 2010 Feb 15.
Article en En | MEDLINE | ID: mdl-19847914
ABSTRACT
A 20-residue peptide, IG(42-61), derived from the C-terminal beta-hairpin of the B3 domain of the immunoglobulin binding protein G from Streptoccocus was studied using circular dichroism, nuclear magnetic resonance (NMR) spectroscopy at various temperatures and by differential scanning calorimetry (DSC). Unlike other related peptides studied so far, this peptide displays two heat capacity peaks in DSC measurements (at a scanning rate of 1.5 deg/min at a peptide concentration of 0.07 mM), which suggests a three-state folding/unfolding process. The results from DSC and NMR measurements suggest the formation of a dynamic network of hydrophobic interactions stabilizing the structure, which resembles a beta-hairpin shape over a wide range of temperatures (283-313 K). Our results show that IG (42-61) possesses a well-organized three-dimensional structure stabilized by long-range hydrophobic interactions (Tyr50 ... Phe57 and Trp48 ... Val59) at T = 283 K and (Trp48 ... Val59) at 305 and 313 K. The mechanism of beta-hairpin folding and unfolding, as well as the influence of peptide length on its conformational properties, are also discussed.
Asunto(s)

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Proteínas Bacterianas / Modelos Químicos Idioma: En Revista: Proteins Asunto de la revista: BIOQUIMICA Año: 2010 Tipo del documento: Article País de afiliación: Polonia

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Proteínas Bacterianas / Modelos Químicos Idioma: En Revista: Proteins Asunto de la revista: BIOQUIMICA Año: 2010 Tipo del documento: Article País de afiliación: Polonia