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Huntingtin: A Protein with a Peculiar Solvent Accessible Surface.
Babbi, Giulia; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita.
Afiliación
  • Babbi G; Biocomputing Group, University of Bologna, Via San Giacomo 9/2, 40126 Bologna, Italy.
  • Savojardo C; Biocomputing Group, University of Bologna, Via San Giacomo 9/2, 40126 Bologna, Italy.
  • Martelli PL; Biocomputing Group, University of Bologna, Via San Giacomo 9/2, 40126 Bologna, Italy.
  • Casadio R; Biocomputing Group, University of Bologna, Via San Giacomo 9/2, 40126 Bologna, Italy.
Int J Mol Sci ; 22(6)2021 Mar 12.
Article en En | MEDLINE | ID: mdl-33809039
Taking advantage of the last cryogenic electron microscopy structure of human huntingtin, we explored with computational methods its physicochemical properties, focusing on the solvent accessible surface of the protein and highlighting a quite interesting mix of hydrophobic and hydrophilic patterns, with the prevalence of the latter ones. We then evaluated the probability of exposed residues to be in contact with other proteins, discovering that they tend to cluster in specific regions of the protein. We then found that the remaining portions of the protein surface can contain calcium-binding sites that we propose here as putative mediators for the protein to interact with membranes. Our findings are justified in relation to the present knowledge of huntingtin functional annotation.
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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Proteínas / Calcio / Biología Computacional / Proteína Huntingtina Tipo de estudio: Prognostic_studies / Risk_factors_studies Límite: Humans Idioma: En Revista: Int J Mol Sci Año: 2021 Tipo del documento: Article País de afiliación: Italia

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Proteínas / Calcio / Biología Computacional / Proteína Huntingtina Tipo de estudio: Prognostic_studies / Risk_factors_studies Límite: Humans Idioma: En Revista: Int J Mol Sci Año: 2021 Tipo del documento: Article País de afiliación: Italia