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CCP4 Cloud for structure determination and project management in macromolecular crystallography.
Krissinel, Eugene; Lebedev, Andrey A; Uski, Ville; Ballard, Charles B; Keegan, Ronan M; Kovalevskiy, Oleg; Nicholls, Robert A; Pannu, Navraj S; Skubák, Pavol; Berrisford, John; Fando, Maria; Lohkamp, Bernhard; Wojdyr, Marcin; Simpkin, Adam J; Thomas, Jens M H; Oliver, Christopher; Vonrhein, Clemens; Chojnowski, Grzegorz; Basle, Arnaud; Purkiss, Andrew; Isupov, Michail N; McNicholas, Stuart; Lowe, Edward; Triviño, Josep; Cowtan, Kevin; Agirre, Jon; Rigden, Daniel J; Uson, Isabel; Lamzin, Victor; Tews, Ivo; Bricogne, Gerard; Leslie, Andrew G W; Brown, David G.
Afiliación
  • Krissinel E; Scientific Computing Department, Science and Technology Facilities Council UK, Didcot OX11 0FA, United Kingdom.
  • Lebedev AA; Scientific Computing Department, Science and Technology Facilities Council UK, Didcot OX11 0FA, United Kingdom.
  • Uski V; Scientific Computing Department, Science and Technology Facilities Council UK, Didcot OX11 0FA, United Kingdom.
  • Ballard CB; Scientific Computing Department, Science and Technology Facilities Council UK, Didcot OX11 0FA, United Kingdom.
  • Keegan RM; Scientific Computing Department, Science and Technology Facilities Council UK, Didcot OX11 0FA, United Kingdom.
  • Kovalevskiy O; Scientific Computing Department, Science and Technology Facilities Council UK, Didcot OX11 0FA, United Kingdom.
  • Nicholls RA; Structural Studies Division, MRC Laboratory for Structural Biology, Cambridge CB2 0QH, United Kingdom.
  • Pannu NS; Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
  • Skubák P; Leiden University Medical Center, 2333 ZA Leiden, The Netherlands.
  • Berrisford J; European Bioinformatics Institute, Hinxton CB9 1SD, United Kingdom.
  • Fando M; Institute of Protein Research, Pushchino 142290, Russian Federation.
  • Lohkamp B; Department of Medical Biochemistry and Biophysics, Karolinska Institutet, SE-171 77 Stockholm, Sweden.
  • Wojdyr M; Global Phasing Limited, Sheraton House, Castle Park, Cambridge CB3 0AX, United Kingdom.
  • Simpkin AJ; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom.
  • Thomas JMH; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom.
  • Oliver C; School of Physics and Astronomy, University of Birmingham, Birmingham B15 2TT, United Kingdom.
  • Vonrhein C; Global Phasing Limited, Sheraton House, Castle Park, Cambridge CB3 0AX, United Kingdom.
  • Chojnowski G; European Molecular Biology Laboratory, Hamburg Unit, Notkestrasse 85, 22607 Hamburg, Germany.
  • Basle A; Newcastle University Biosciences Institute Medical School, Newcastle upon Tyne NE2 4AX, United Kingdom.
  • Purkiss A; Structural Biology Science Technology Platform, The Francis Crick Institute, 1 Midland Road, London NW1 1AT, United Kingdom.
  • Isupov MN; Biosciences, University of Exeter, Stocker Road, Exeter EX4 4QD, United Kingdom.
  • McNicholas S; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom.
  • Lowe E; Department of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, United Kingdom.
  • Triviño J; Crystallographic Methods, Institute of Molecular Biology of Barcelona (IBMB-CSIC), Barcelona Science Park, Helix Building, Baldiri Reixac 15, 08028 Barcelona, Spain.
  • Cowtan K; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom.
  • Agirre J; York Structural Biology Laboratory, Department of Chemistry, University of York, York YO10 5DD, United Kingdom.
  • Rigden DJ; Institute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom.
  • Uson I; Crystallographic Methods, Institute of Molecular Biology of Barcelona (IBMB-CSIC), Barcelona Science Park, Helix Building, Baldiri Reixac 15, 08028 Barcelona, Spain.
  • Lamzin V; European Molecular Biology Laboratory, Hamburg Unit, Notkestrasse 85, 22607 Hamburg, Germany.
  • Tews I; Biological Sciences, Institute for Life Sciences, University of Southampton, Southampton SO17 1BJ, United Kingdom.
  • Bricogne G; Global Phasing Limited, Sheraton House, Castle Park, Cambridge CB3 0AX, United Kingdom.
  • Leslie AGW; Structural Studies Division, MRC Laboratory for Structural Biology, Cambridge CB2 0QH, United Kingdom.
  • Brown DG; Servier Research Institute in Croissy-sur-Seine, 125 Chemin de Ronde, 78290 Croissy, France.
Acta Crystallogr D Struct Biol ; 78(Pt 9): 1079-1089, 2022 Sep 01.
Article en En | MEDLINE | ID: mdl-36048148
ABSTRACT
Nowadays, progress in the determination of three-dimensional macromolecular structures from diffraction images is achieved partly at the cost of increasing data volumes. This is due to the deployment of modern high-speed, high-resolution detectors, the increased complexity and variety of crystallographic software, the use of extensive databases and high-performance computing. This limits what can be accomplished with personal, offline, computing equipment in terms of both productivity and maintainability. There is also an issue of long-term data maintenance and availability of structure-solution projects as the links between experimental observations and the final results deposited in the PDB. In this article, CCP4 Cloud, a new front-end of the CCP4 software suite, is presented which mitigates these effects by providing an online, cloud-based environment for crystallographic computation. CCP4 Cloud was developed for the efficient delivery of computing power, database services and seamless integration with web resources. It provides a rich graphical user interface that allows project sharing and long-term storage for structure-solution projects, and can be linked to data-producing facilities. The system is distributed with the CCP4 software suite version 7.1 and higher, and an online publicly available instance of CCP4 Cloud is provided by CCP4.
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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Programas Informáticos / Nube Computacional Idioma: En Revista: Acta Crystallogr D Struct Biol Año: 2022 Tipo del documento: Article País de afiliación: Reino Unido

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Programas Informáticos / Nube Computacional Idioma: En Revista: Acta Crystallogr D Struct Biol Año: 2022 Tipo del documento: Article País de afiliación: Reino Unido