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plantMASST - Community-driven chemotaxonomic digitization of plants.
Gomes, Paulo Wender P; Mannochio-Russo, Helena; Schmid, Robin; Zuffa, Simone; Damiani, Tito; Quiros-Guerrero, Luis-Manuel; Caraballo-Rodríguez, Andrés Mauricio; Zhao, Haoqi Nina; Yang, Heejung; Xing, Shipei; Charron-Lamoureux, Vincent; Chigumba, Desnor N; Sedio, Brian E; Myers, Jonathan A; Allard, Pierre-Marie; Harwood, Thomas V; Tamayo-Castillo, Giselle; Kang, Kyo Bin; Defossez, Emmanuel; Koolen, Hector H F; da Silva, Milton Nascimento; E Silva, Consuelo Yumiko Yoshioka; Rasmann, Sergio; Walker, Tom W N; Glauser, Gaëtan; Chaves-Fallas, José Miguel; David, Bruno; Kim, Hyunwoo; Lee, Kyu Hyeong; Kim, Myeong Ji; Choi, Won Jun; Keum, Young-Sam; de Lima, Emilly J S P; de Medeiros, Lívia Soman; Bataglion, Giovana A; Costa, Emmanoel V; da Silva, Felipe M A; Carvalho, Alice Rhelly V; Reis, José Diogo E; Pamplona, Sônia; Jeong, Eunah; Lee, Kyungha; Kim, Geum Jin; Kil, Yun-Seo; Nam, Joo-Won; Choi, Hyukjae; Han, Yoo Kyong; Park, Si Young; Lee, Ki Yong; Hu, Changling.
Afiliación
  • Gomes PWP; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
  • Mannochio-Russo H; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
  • Schmid R; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
  • Zuffa S; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
  • Damiani T; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
  • Quiros-Guerrero LM; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
  • Caraballo-Rodríguez AM; Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic.
  • Zhao HN; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
  • Yang H; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
  • Xing S; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
  • Charron-Lamoureux V; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
  • Chigumba DN; Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Prague, Czech Republic.
  • Sedio BE; Institute of Pharmaceutical Sciences of Western Switzerland, University of Geneva, CMU, 1211 Geneva, Switzerland.
  • Myers JA; School of Pharmaceutical Sciences, University of Geneva, CMU, 1211 Geneva, Switzerland.
  • Allard PM; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
  • Harwood TV; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
  • Tamayo-Castillo G; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
  • Kang KB; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
  • Defossez E; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
  • Koolen HHF; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
  • da Silva MN; College of Pharmacy, Kangwon National University, Chuncheon, Republic of Korea.
  • E Silva CYY; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
  • Rasmann S; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
  • Walker TWN; Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
  • Glauser G; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA, USA.
  • Chaves-Fallas JM; Department of Medicinal Chemistry, University of Michigan, Ann Arbor, MI, USA.
  • David B; Program in Chemical Biology, University of Michigan, Ann Arbor, MI, USA.
  • Kim H; Department of Integrative Biology, University of Texas at Austin, Austin, TX, USA.
  • Lee KH; Smithsonian Tropical Research Institute, Republic of Panama.
  • Kim MJ; Department of Biology, Washington University in St. Louis, St. Louis, MO, USA.
  • Choi WJ; Department of Biology, University of Fribourg, 1700 Fribourg, Switzerland.
  • Keum YS; The DOE Joint Genome Institute, Lawrence Berkeley National Laboratory, One Cyclotron Road, Berkeley, CA, 94720, United States.
  • de Lima EJSP; Centro de Investigaciones en Productos Naturales (CIPRONA), Universidad de Costa Rica, San José 11501-2060, Costa Rica.
  • de Medeiros LS; Escuela de Química, Universidad de Costa Rica, 2061 San José, Costa Rica.
  • Bataglion GA; College of Pharmacy and Research Institute of Pharmaceutical Sciences, Sookmyung Women's University, Seoul, Republic of Korea.
  • Costa EV; Institute of Biology, University of Neuchâtel, 2000 Neuchâtel, Switzerland.
  • da Silva FMA; Botanical garden of Neuchâtel.
  • Carvalho ARV; University of the State of Amazonas, Manaus, Brazil.
  • Reis JDE; Laboratory of Liquid Chromatography, Federal University of Pará, Belém 66075-110, Brazil.
  • Pamplona S; Institute of Exact and Natural Sciences, Federal University of Pará, Belém 66075-110, Brazil.
  • Jeong E; Laboratory of Liquid Chromatography, Federal University of Pará, Belém 66075-110, Brazil.
  • Lee K; Institute of Health Sciences, Faculty of Pharmacy, Federal University of Pará, Belém 66075-110, Brazil.
  • Kim GJ; Institute of Biology, University of Neuchâtel, 2000 Neuchâtel, Switzerland.
  • Kil YS; Institute of Biology, University of Neuchâtel, 2000 Neuchâtel, Switzerland.
  • Nam JW; Neuchâtel Platform of Analytical Chemistry, University of Neuchâtel, 2000 Neuchâtel, Switzerland.
  • Choi H; Centro de Investigaciones en Productos Naturales (CIPRONA), Universidad de Costa Rica, San José 11501-2060, Costa Rica.
  • Han YK; Department of Biology and Whitney R. Harris World Ecology Center, University of Missouri-St. Louis, St. Louis, MO 63121, USA.
  • Park SY; Green Mission Pierre Fabre, Institut de Recherche Pierre Fabre, 3 Avenue Hubert Curien, BP 13562, 31562 Toulouse, France.
  • Lee KY; College of Pharmacy and Integrated Research Institute for Drug Development, Dongguk University, 32, Dongguk-ro, Goyang, Gyeonggi-do 10326, Korea.
  • Hu C; College of Pharmacy and Integrated Research Institute for Drug Development, Dongguk University, 32, Dongguk-ro, Goyang, Gyeonggi-do 10326, Korea.
bioRxiv ; 2024 May 14.
Article en En | MEDLINE | ID: mdl-38798440
ABSTRACT
Understanding the distribution of hundreds of thousands of plant metabolites across the plant kingdom presents a challenge. To address this, we curated publicly available LC-MS/MS data from 19,075 plant extracts and developed the plantMASST reference database encompassing 246 botanical families, 1,469 genera, and 2,793 species. This taxonomically focused database facilitates the exploration of plant-derived molecules using tandem mass spectrometry (MS/MS) spectra. This tool will aid in drug discovery, biosynthesis, (chemo)taxonomy, and the evolutionary ecology of herbivore interactions.
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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Idioma: En Revista: BioRxiv Año: 2024 Tipo del documento: Article País de afiliación: Estados Unidos
Texto completo
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Idioma: En Revista: BioRxiv Año: 2024 Tipo del documento: Article País de afiliación: Estados Unidos