Distortion correction for particle image velocimetry using multiple-input deep convolutional neural network and Hartmann-Shack sensing.

Aberrations degrade the accuracy of quantitative, imaging-based measurements, like particle image velocimetry (PIV). Adaptive optical elements can in principle correct the wavefront distortions, but are limited by their technical specifications. Here we propose an actuator-free correction based on a multiple-input deep convolutional neural network which uses an additional input from a wavefront sensor to correct time-varying distortions. It is applied for imaging flow velocimetry to conduct measurements through a fluctuating air-water phase boundary. Dataset for neural network is generated by an experimental setup with a deformable mirror. Correction performance of trained model is estimated in terms of image quality, which is improved significantly, and flow measurement results, where the errors induced by the distortion from fluctuating phase boundary can be corrected by 82 %. The technique has the potential to replace classical closed-loop adaptive optical systems where the performance of the actuators is not sufficient.

Secondary BH4 deficiency links protein homeostasis to regulation of phenylalanine metabolism.

Metabolic control of phenylalanine concentrations in body fluids is essential for cognitive development and executive function. The hepatic phenylalanine hydroxylating system is regulated by the ratio of l-phenylalanine, which is substrate of phenylalanine hydroxylase (PAH), to the PAH cofactor tetrahydrobiopterin (BH4). Physiologically, phenylalanine availability is governed by nutrient intake, whereas liver BH4 is kept at constant level. In phenylketonuria, PAH deficiency leads to elevated blood phenylalanine and is often caused by PAH protein misfolding with loss of function. Here, we report secondary hepatic BH4 deficiency in Pah-deficient mice. Alterations in de novo synthesis and turnover of BH4 were ruled out as molecular causes. We demonstrate that kinetically instable and aggregation-prone variant Pah proteins trap BH4, shifting the pool of free BH4 towards bound BH4. Interference of PAH protein misfolding with metabolite-based control of l-phenylalanine turnover suggests a mechanistic link between perturbation of protein homeostasis and disturbed regulation of metabolic pathways.

Velocity measurements with structured light transmitted through a multimode optical fiber using digital optical phase conjugation.

Lensless fiber microendoscopes enable optical diagnostics and therapy with minimal invasiveness. Because of their small diameters, multimode fibers are ideal candidates, but mode scrambling hinders the transmission of structured light fields. We present the generation of a localized fringe system at variable distances from the distal fiber end by exploiting digital optical phase conjugation. The replayed fringe system was used for quantitative metrology. Velocity measurements of a microchannel flow in the immediate proximity of the fiber end without the use of any imaging lenses are shown. Lensless multimode fiber systems are of interest especially for biomedical imaging and stimulation as well as technical inspection and flow measurements.

Adaptive laser-induced ultrasound generation using a micro-mirror array spatial light modulator.

Laser ultrasonics is a powerful technique for contactless investigation of important material parameters such as Young's modulus or thin layer thickness. However, the often employed Gaussian beams result in diverging sound fields of quickly decreasing intensity. Conventionally, changing the laser beam profile requires the slow movement or exchange of optical elements. We present a laser ultrasonics setup for the creation of arbitrary intensity distributions by holographic projection using a MEMS spatial light modulator. High-intensity ultrasound foci with a focus width of 1.6 mm are scanned axially in a sample into depths of up to 7.4 mm by projecting ring-shaped intensity distributions of varying diameter without any mechanical movements. This technique is promising for highly spatially resolved flaw detection or a fast scanning investigation of biological tissue.

Transmission of independent signals through a multimode fiber using digital optical phase conjugation.

Multimode fibers are attractive for a variety of applications such as communication engineering and biophotonics. However, a major hurdle for the optical transmission through multimode fibers is the inherent mode mixing. Although an image transmission was successfully accomplished using wavefront shaping, the image information was not transmitted individually for each of the independent pixels. We demonstrate a transmission of independent signals using individually shaped wavefronts employing a single segmented spatial light modulator for optical phase conjugation regarding each light signal. Our findings pave the way towards transferring independent signals through strongly scattering media.

Wavefront shaping for imaging-based flow velocity measurements through distortions using a Fresnel guide star.

Imaging-based flow measurement techniques, like particle image velocimetry (PIV), are vulnerable to time-varying distortions like refractive index inhomogeneities or fluctuating phase boundaries. Such distortions strongly increase the velocity error, as the position assignment of the tracer particles and the decrease of image contrast exhibit significant uncertainties. We demonstrate that wavefront shaping based on spatially distributed guide stars has the potential to significantly reduce the measurement uncertainty. Proof of concept experiments show an improvement by more than one order of magnitude. Possible applications for the wavefront shaping PIV range from measurements in jets and film flows to biomedical applications.

Spiral phase mask shadow-imaging for 3D-measurement of flow fields.

Particle tracking velocimetry (PTV) is a valuable tool for microfluidic analysis. Especially mixing processes and the environmental interaction of fluids on a microscopic scale are of particular importance for pharmaceutical and biomedical applications. However, currently applied techniques suffer from the lag of instantaneous depth information. Here we present a scan-free, shadow-imaging PTV-technique for 3D trajectory and velocity measurement of flow fields in micro-channels with 2 µm spatial resolution. By using an incoherent light source, one camera and a spatial light modulator (LCoS-SLM) that generates double-images of the seeding particle shadows, it is a simply applicable and highly scalable technique.

Interferometric velocity measurements through a fluctuating phase boundary using two Fresnel guide stars.

Laser optical techniques are widely used for flow measurements as they offer a high spatial and velocity resolution. However, undisturbed optical access to the measurement volume is desired. In order to measure through a fluctuating phase boundary, we present the use of adaptive optics. In an experiment, we prove that the Fresnel reflex of a phase boundary can be used as a proper guide star for adaptive velocity measurements with a single optical access. Interferometric flow measurements through a fluctuating phase boundary have been accomplished by a Mach-Zehnder interferometer.

Analysis of the electrolyte convection inside the concentration boundary layer during structured electrodeposition of copper in high magnetic gradient fields.

To experimentally reveal the correlation between electrodeposited structure and electrolyte convection induced inside the concentration boundary layer, a highly inhomogeneous magnetic field, generated by a magnetized Fe-wire, has been applied to an electrochemical system. The influence of Lorentz and magnetic field gradient force to the local transport phenomena of copper ions has been studied using a novel two-component laser Doppler velocity profile sensor. With this sensor, the electrolyte convection within 500 µm of a horizontally aligned cathode is presented. The electrode-normal two-component velocity profiles below the electrodeposited structure show that electrolyte convection is induced and directed toward the rim of the Fe-wire. The measured deposited structure directly correlates to the observed boundary layer flow. As the local concentration of Cu(2+) ions is enhanced due to the induced convection, maximum deposit thicknesses can be found at the rim of the Fe-wire. Furthermore, a complex boundary layer flow structure was determined, indicating that electrolyte convection of second order is induced. Moreover, the Lorentz force-driven convection rapidly vanishes, while the electrolyte convection induced by the magnetic field gradient force is preserved much longer. The progress for research is the first direct experimental proof of the electrolyte convection inside the concentration boundary layer that correlates to the deposited structure and reveals that the magnetic field gradient force is responsible for the observed structuring effect.

Interferometric velocity measurements through a fluctuating gas-liquid interface employing adaptive optics.

Optical transmission through fluctuating interfaces of mediums with different refractive indexes is limited by the occurring distortions. Temporal fluctuations of such distortions deteriorate optical measurements. In order to overcome this shortcoming we propose the use of adaptive optics. For the first time, an interferometric velocity measurement technique with embedded adaptive optics is presented for flow velocity measurements through a fluctuating air-water interface. A low order distortion correction technique using a fast deformable mirror and a Hartmann-Shack camera with high frame rate is employed. The obtained high control bandwidth enables precise measurements also at fast fluctuating media interfaces. This methodology paves the way for several kinds of optical flow measurements in various complex environments.

Optical multi-point measurements of the acoustic particle velocity with frequency modulated Doppler global velocimetry.

To reduce the noise of machines such as aircraft engines, the development and propagation of sound has to be investigated. Since the applicability of microphones is limited due to their intrusiveness, contactless measurement techniques are required. For this reason, the present study describes an optical method based on the Doppler effect and its application for acoustic particle velocity (APV) measurements. While former APV measurements with Doppler techniques are point measurements, the applied system is capable of simultaneous measurements at multiple points. In its current state, the system provides linear array measurements of one component of the APV demonstrated by multi-tone experiments with tones up to 17 kHz for the first time.

Beyond Janus Geometry: Characterization of Flow Fields around Nonspherical Photocatalytic Microswimmers.

Catalytic microswimmers that move by a phoretic mechanism in response to a self-induced chemical gradient are often obtained by the design of spherical janus microparticles, which suffer from multi-step fabrication and low yields. Approaches that circumvent laborious multi-step fabrication include the exploitation of the possibility of nonuniform catalytic activity along the surface of irregular particle shapes, local excitation or intrinsic asymmetry. Unfortunately, the effects on the generation of motion remain poorly understood. In this work, single crystalline BiVO4 microswimmers are presented that rely on a strict inherent asymmetry of charge-carrier distribution under illumination. The origin of the asymmetrical flow pattern is elucidated because of the high spatial resolution of measured flow fields around pinned BiVO4 colloids. As a result the flow from oxidative to reductive particle sides is confirmed. Distribution of oxidation and reduction reactions suggests a dominant self-electrophoretic motion mechanism with a source quadrupole as the origin of the induced flows. It is shown that the symmetry of the flow fields is broken by self-shadowing of the particles and synthetic surface defects that impact the photocatalytic activity of the microswimmers. The results demonstrate the complexity of symmetry breaking in nonspherical microswimmers and emphasize the role of self-shadowing for photocatalytic microswimmers. The findings are leading the way toward understanding of propulsion mechanisms of phoretic colloids of various shapes.

Tracking connectivity maps in human stem cell-derived neuronal networks by holographic optogenetics.

Neuronal networks derived from human induced pluripotent stem cells have been exploited widely for modeling neuronal circuits, neurological diseases, and drug screening. As these networks require extended culturing periods to functionally mature in vitro, most studies are based on immature networks. To obtain insights on long-term functional features, we improved a glia-neuron co-culture protocol within multi-electrode arrays, facilitating continuous assessment of electrical features in weekly intervals. By full-field optogenetic stimulation, we detected an earlier onset of neuronal firing and burst activity compared with spontaneous activity. Full-field stimulation enhanced the number of active neurons and their firing rates. Compared with full-field stimulation, which evoked synchronized activity across all neurons, holographic stimulation of individual neurons resulted in local activity. Single-cell holographic stimulation facilitated to trace propagating evoked activities of 400 individually stimulated neurons per multi-electrode array. Thereby, we revealed precise functional neuronal connectivity motifs. Holographic stimulation data over time showed increasing connection numbers and strength with culture age. This holographic stimulation setup has the potential to establish a profound functional testbed for in-depth analysis of human-induced pluripotent stem cell-derived neuronal networks.

Scattering effects at near-wall flow measurements using Doppler global velocimetry.

Doppler global velocimetry (DGV) is considered to be a useful optical measurement tool for acquiring flow velocity fields. Often near-wall measurements are required, which is still challenging due to errors resulting from background scattering and multiple-particle scattering. Since the magnitudes of both errors are unknown so far, they are investigated by scattering simulations and experiments. Multiple-particle scattering mainly causes a stochastic error, which can be reduced by averaging. Contrary to this, background scattering results in a relative systematic error, which is directly proportional to the ratio of the background scattered light power to the total scattered light power. After applying a correction method and optimizing the measurement arrangement, a subsonic flat plate boundary layer was successfully measured achieving a minimum wall distance of 100 µm with a maximum relative error of 6%. The investigations reveal the current capabilities and perspectives of DGV for near-wall measurements.

Ultrasound Super-Resolution Flow Measurement of Suspensions in Narrow Channels.

Zinc-air flow batteries provide a scalable and cost-efficient energy storage solution. However, the achieved power density depends on the local flow conditions of the zinc particle suspension in the electrochemical cell. Numerical modeling is challenging due to the complex multiphase fluid and the interaction of flow and electrochemistry. Hence, performing experiments is crucial to investigate the influence of the flow conditions on the electrical performance, which requires flow instrumentation for the opaque suspension. To resolve the flow field across the 2.6-mm-wide flow channel of the investigated zinc-air flow battery (ZAB), a spatial resolution below 100 [Formula: see text] has to be typically achieved. Using ultrasound techniques, the achieved spatial resolution is limited by the trade-off between ultrasound frequency and imaging depth. This trade-off is even more critical for suspensions due to the scattering of the ultrasound, which increases strongly with frequency. We propose super-resolution particle tracking velocimetry (SRPTV) to overcome this limitation by achieving the required spatial resolution at a low ultrasound frequency. SRPTV is based on the super-resolution technique ultrasound localization microscopy, which is adapted to strongly scattering suspensions by using a dual-frequency-phased array and applying a coherence weighting beamformer to suppress speckles, which result from the scattering at the zinc particles of the suspension. The spatial resolution and the velocity uncertainty are characterized through calibration measurement and numerical simulation. A spatial resolution of 66 [Formula: see text] at an excitation wavelength of 330 [Formula: see text] was achieved, which is sufficient for performing flow investigation in an operational ZAB. The measured flow profile reveals shear-thinning properties and wall slip and therefore differs significantly from a parabolic flow profile of a Newtonian fluid. The presented technique offers potential for performing flow investigations of suspensions in small geometries with a spatial resolution beyond the diffraction limit.

Laser Doppler sensor employing a single fan-shaped interference fringe system for distance and shape measurement of laterally moving objects.

For monitoring the position and shape of fast moving and, especially, rotating objects such as turbo machine rotors, contactless and compact sensors with a high measurement rate as well as high precision are required. We present for the first time, to the best of our knowledge, a novel laser Doppler sensor employing a single fan-shaped interference fringe system, which allows measuring for the position and shape of fast moving solid bodies with known tangential velocity. It is shown theoretically as well as experimentally that this sensor offers concurrently high position resolution and high temporal resolution in contrast to conventional measurement techniques, since its measurement uncertainty is, in principle, independent of the object velocity. Moreover, it can be built very compact, because it features low complexity. To prove its operational capability and its potential for practical applications, radial and axial shape measurements of rotating bodies are demonstrated in comparison with triangulation. An average position resolution of about 2 microm could be achieved.

Three-Dimensional Flow Studies in Cylindrical Magnetohydrodynamic Experiments Using Ultrasound Array Velocimetry.

Crystal growth processes can profit from an electromagnetically driven melt flow since controlling them allows optimizing the mass and heat transfers in the melt and, thereby, improves the structural and electrical properties of the grown crystals. This process optimization requires a precise understanding of magnetohydrodynamics (MHD) phenomena in crystal growth. Studying time-dependent MHD demands for a high temporal resolution combined with a long measurement duration to analyze the transitional flow behavior. Furthermore, a spatially resolved measurement of the global flow structure is desired to capture the complex 3-D flow structures. We present an ultrasound array Doppler velocimeter (UADV) for time-resolved flow imaging in MHD model experiments with low-melting metals. Flow imaging at frame rates of several Hertz is achieved by using a combined spatial and temporal multiplexing scheme. Long-running measurements are enabled by a field-programmable gate array (FPGA)-based signal processing that reduces the measurement data rate by a factor of 5. A reconstruction of the 3-D flow structure in cylindrical containers with a rotation-symmetric flow is proposed. The UADV is demonstrated at an MHD experiment with a melt flow in a cylindrical container driven by a traveling magnetic field. The transition from a laminar to a time-dependent flow is studied, revealing an oscillating flow. The demonstration of the 3-D reconstruction gives comprehensive insight into the global flow structure. Hence, the UADV method is shown to be a valuable tool for measuring complex, time-dependent melt flows, which can contribute to a better understanding of the flow phenomena during crystal growth.

Vector Flow Imaging of a Highly Laden Suspension in a Zinc-Air Flow Battery Model.

Flow batteries using suspension electrodes, e.g., zinc-air flow batteries (ZABs), have recently gained renewed interest as potential candidates for grid energy storage or mobile applications. The performance of ZABs depends on the local flow conditions of the suspension in the electrochemical cell, which acts as an electrode. Hence, it is crucial to measure and understand the complex flow characteristics of such solid-liquid suspensions. The investigated suspension electrode is an opaque slurry that consists of microscopic zinc particles and an aqueous potassium hydroxide electrolyte. Commonly, ultrasound Doppler velocimetry is used for flow imaging in opaque fluids. However, due to the high particle concentration in the suspension electrode, strong scattering and wavefront distortions of the ultrasound are introduced. In this paper, we show that this results in an increased measurement uncertainty for Doppler-based velocity estimation. Instead, ultrasound image velocimetry is applied to measure the 2-D and two-component flow field in the zinc-electrolyte suspension. This is possible by adapting the measurement system to the suspension with a calibration setup. The total measurement uncertainties of 4.1% and 2.5% for the axial and lateral flow components are derived from the calibration measurements. For the first time, the flow field of such a suspension could be measured in a scaled fluidic model of a ZAB. The comparison of the estimated flow rates from the velocity profiles showed good agreement to a gravimetric reference. A significant difference in the flow characteristics of a macroscopically homogeneous electrolyte and the same electrolyte loaded with 8 vol.-% zinc particles, i.e., the suspension electrode, was found. Along with the demonstration of the measurement technique for opaque, concentrated suspensions, the measurement data will be used to calibrate and validate numerical models for comparable multiphase fluids.

Isoform-specific domain organization determines conformation and function of the peroxisomal biogenesis factor PEX26.

Peroxisomal biogenesis factor PEX26 is a membrane anchor for the multi-subunit PEX1-PEX6 protein complex that controls ubiquitination and dislocation of PEX5 cargo receptors for peroxisomal matrix protein import. PEX26 associates with the peroxisomal translocation pore via PEX14 and a splice variant (PEX26Δex5) of unknown function has been reported. Here, we demonstrate PEX26 homooligomerization mediated by two heptad repeat domains adjacent to the transmembrane domain. We show that isoform-specific domain organization determines PEX26 oligomerization and impacts peroxisomal ß-oxidation and proliferation. PEX26 and PEX26Δex5 displayed different patterns of interaction with PEX2-PEX10 or PEX13-PEX14 complexes, which relate to distinct pre-peroxisomes in the de novo synthesis pathway. Our data support an alternative PEX14-dependent mechanism of peroxisomal membrane association for the splice variant, which lacks a transmembrane domain. Structure-function relationships of PEX26 isoforms explain an extended function in peroxisomal homeostasis and these findings may improve our understanding of the broad phenotype of PEX26-associated human disorders.

Measurement uncertainty and temporal resolution of Doppler global velocimetry using laser frequency modulation.

A Doppler global velocimetry (DGV) measurement technique with a sinusoidal laser frequency modulation is presented for measuring velocity fields in fluid flows. A cesium absorption cell is used for the conversion of the Doppler shift frequency into a change in light intensity, which can be measured by a fiber coupled avalanche photo diode array. Because of a harmonic analysis of the detector element signals, no errors due to detector offset drifts occur and no reference detector array is necessary for measuring the scattered light power. Hence, large errors such as image misalignment errors and beam split errors are eliminated. Furthermore, the measurement system is also capable of achieving high measurement rates up to the modulation frequency (100 kHz) and thus opens new perspectives to multiple point investigations of instationary flows, e.g., for turbulence analysis. A fundamental measurement uncertainty analysis based on the theory of Cramér and Rao is given and validated by experimental results. The current relation between time resolution and measurement uncertainty, as well as further optimization strategies, are discussed.