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1.
Neurobiol Dis ; 124: 14-28, 2019 04.
Artículo en Inglés | MEDLINE | ID: mdl-30389403

RESUMEN

Spinocerebellar ataxia 28 is an autosomal dominant neurodegenerative disorder caused by missense mutations affecting the proteolytic domain of AFG3L2, a major component of the mitochondrial m-AAA protease. However, little is known of the underlying pathogenetic mechanisms or how to treat patients with SCA28. Currently available Afg3l2 mutant mice harbour deletions that lead to severe, early-onset neurological phenotypes that do not faithfully reproduce the late-onset and slowly progressing SCA28 phenotype. Here we describe production and detailed analysis of a new knock-in murine model harbouring an Afg3l2 allele carrying the p.Met665Arg patient-derived mutation. Heterozygous mutant mice developed normally but adult mice showed signs of cerebellar ataxia detectable by beam test. Although cerebellar pathology was negative, electrophysiological analysis showed a trend towards increased spontaneous firing in Purkinje cells from heterozygous mutants with respect to wild-type controls. As homozygous mutants died perinatally with evidence of cardiac atrophy, for each genotype we generated mouse embryonic fibroblasts (MEFs) to investigate mitochondrial function. MEFs from mutant mice showed altered mitochondrial bioenergetics, with decreased basal oxygen consumption rate, ATP synthesis and mitochondrial membrane potential. Mitochondrial network formation and morphology was altered, with greatly reduced expression of fusogenic Opa1 isoforms. Mitochondrial alterations were also detected in cerebella of 18-month-old heterozygous mutants and may be a hallmark of disease. Pharmacological inhibition of de novo mitochondrial protein translation with chloramphenicol caused reversal of mitochondrial morphology in homozygous mutant MEFs, supporting the relevance of mitochondrial proteotoxicity for SCA28 pathogenesis and therapy development.


Asunto(s)
Proteasas ATP-Dependientes/genética , ATPasas Asociadas con Actividades Celulares Diversas/genética , Modelos Animales de Enfermedad , Mitocondrias/metabolismo , Ataxias Espinocerebelosas/congénito , Animales , Femenino , Técnicas de Sustitución del Gen , Potencial de la Membrana Mitocondrial , Ratones Endogámicos C57BL , Proteínas Mitocondriales/metabolismo , Mutación Missense , Células de Purkinje/fisiología , Células de Purkinje/ultraestructura , Ataxias Espinocerebelosas/genética , Ataxias Espinocerebelosas/metabolismo , Ataxias Espinocerebelosas/patología
2.
Am J Med Genet A ; 170(7): 1772-9, 2016 07.
Artículo en Inglés | MEDLINE | ID: mdl-27108886

RESUMEN

Whole exome sequencing (WES) is a powerful tool to identify clinically undefined forms of intellectual disability/developmental delay (ID/DD), especially in consanguineous families. Here we report the genetic definition of two sporadic cases, with syndromic ID/DD for whom array-Comparative Genomic Hybridization (aCGH) identified a de novo copy number variant (CNV) of uncertain significance. The phenotypes included microcephaly with brachycephaly and a distinctive facies in one proband, and hypotonia in the legs and mild ataxia in the other. WES allowed identification of a functionally relevant homozygous variant affecting a known disease gene for rare syndromic ID/DD in each proband, that is, c.1423C>T (p.Arg377*) in the Trafficking Protein Particle Complex 9 (TRAPPC9), and c.154T>C (p.Cys52Arg) in the Very Low Density Lipoprotein Receptor (VLDLR). Four mutations affecting TRAPPC9 have been previously reported, and the present finding further depicts this syndromic form of ID, which includes microcephaly with brachycephaly, corpus callosum hypoplasia, facial dysmorphism, and overweight. VLDLR-associated cerebellar hypoplasia (VLDLR-CH) is characterized by non-progressive congenital ataxia and moderate-to-profound intellectual disability. The c.154T>C (p.Cys52Arg) mutation was associated with a very mild form of ataxia, mild intellectual disability, and cerebellar hypoplasia without cortical gyri simplification. In conclusion, we report two novel cases with rare causes of autosomal recessive ID, which document how interpreting de novo array-CGH variants represents a challenge in consanguineous families; as such, clinical WES should be considered in diagnostic testing. © 2016 Wiley Periodicals, Inc.


Asunto(s)
Proteínas Portadoras/genética , Discapacidades del Desarrollo/genética , Discapacidad Intelectual/genética , Receptores de LDL/genética , Ataxia Cerebelosa/genética , Ataxia Cerebelosa/fisiopatología , Cerebelo/anomalías , Cerebelo/fisiopatología , Niño , Preescolar , Hibridación Genómica Comparativa , Discapacidades del Desarrollo/fisiopatología , Exoma/genética , Femenino , Predisposición Genética a la Enfermedad , Humanos , Discapacidad Intelectual/fisiopatología , Péptidos y Proteínas de Señalización Intercelular , Microcefalia/genética , Microcefalia/fisiopatología , Mutación , Malformaciones del Sistema Nervioso/genética , Malformaciones del Sistema Nervioso/fisiopatología , Linaje , Fenotipo
3.
Am J Med Genet B Neuropsychiatr Genet ; 171B(2): 290-9, 2016 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-26620927

RESUMEN

Copy number variation (CNV) has been associated with a variety of neuropsychiatric disorders, including intellectual disability/developmental delay (ID/DD), autism spectrum disorder (ASD), and schizophrenia (SCZ). Often, individuals carrying the same pathogenic CNV display high clinical variability. By array-CGH analysis, we identified a novel familial 3q29 deletion (1.36 Mb), centromeric to the 3q29 deletion region, which manifests with variable expressivity. The deletion was identified in a 3-year-old girl diagnosed with ID/DD and autism and segregated in six family members, all affected by severe psychiatric disorders including schizophrenia, major depression, anxiety disorder, and personality disorder. All individuals carrying the deletion were overweight or obese, and anomalies compatible with optic atrophy were observed in three out of four cases examined. Amongst the 10 genes encompassed by the deletion, the haploinsufficiency of Optic Atrophy 1 (OPA1), associated with autosomal dominant optic atrophy, is likely responsible for the ophthalmological anomalies. We hypothesize that the haploinsufficiency of ATPase type 13A4 (ATP13A4) and/or Hairy/Enhancer of Split Drosophila homolog 1 (HES1) contribute to the neuropsychiatric phenotype, while HES1 deletion might underlie the overweight/obesity. In conclusion, we propose a novel contiguous gene syndrome due to a proximal 3q29 deletion variably associated with autism, ID/DD, psychiatric traits and overweight/obesity.


Asunto(s)
Trastorno Autístico/genética , Deleción Cromosómica , Cromosomas Humanos Par 3/genética , Discapacidad Intelectual/genética , Obesidad/genética , Trastornos Psicóticos/genética , Adulto , Anciano , Trastorno Autístico/complicaciones , Niño , Preescolar , Femenino , Humanos , Lactante , Recién Nacido , Discapacidad Intelectual/complicaciones , Masculino , Persona de Mediana Edad , Obesidad/complicaciones , Linaje , Fenotipo , Reacción en Cadena de la Polimerasa , Trastornos Psicóticos/complicaciones
4.
Neurobiol Dis ; 81: 162-7, 2015 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-25882094

RESUMEN

Transition metals are cofactors for a wide range of vital enzymes and are directly or indirectly involved in the response against reactive oxygen species (ROS), which can damage cellular components. Their altered homeostasis has been studied in neurodegenerative disorders such as Alzheimer's disease (AD), Parkinson's disease (PD) and amyotrophic lateral sclerosis (ALS), but no data are available on rarer conditions. We aimed at studying the role of essential trace elements in ataxia telangiectasia (A-T), a rare form of pediatric autosomal recessive cerebellar ataxia with altered antioxidant response. We found an increased level of copper (Cu, p=0.0002) and a reduced level of zinc (Zn, p=0.0002) in the blood of patients (n. 16) compared to controls, using inductively coupled plasma mass spectrometry (ICP-MS). Other trace elements involved in the oxidative stress response, such as manganese (Mn) and selenium (Se), were unaltered. Cu/Zn-dependent superoxide dismutase (SOD1) was shown to have a 30% reduction in gene expression and 40% reduction in enzyme activity upon analysis of lymphoblastoid cell lines of patients (Student's t-test, p=0.0075). We also found a 30% reduction of Mn-SOD (SOD2; Student's t-test, p=0.02), probably due to a feedback regulatory loop between the two enzymes. The expression of antioxidant enzymes, such as erythrocyte glutathione peroxidase (GPX1), and SOD2 was unaltered, whereas catalase (CAT) was increased in A-T cells, both at the mRNA level and in terms of enzyme activity (~25%). Enhanced CAT expression can be attributed to the high ROS status, which induces CAT transcription. These results suggest that alterations in essential trace elements and their related enzymes may play a role in the pathogenesis of A-T, although we cannot conclude if altered homeostasis is a direct effect of A-T mutated genes (ATM). Altered homeostasis of trace elements may be more prevalent in neurodegenerative diseases than previously thought, and it may represent both a biomarker and a generic therapeutic target for different disorders with the common theme of altered antioxidant enzyme responses associated with an unbalance of metals.


Asunto(s)
Ataxia Telangiectasia/sangre , Catalasa/sangre , Metales/sangre , Superóxido Dismutasa/sangre , Adolescente , Catalasa/genética , Células Cultivadas , Niño , Preescolar , Femenino , Expresión Génica , Humanos , Masculino , Espectrometría de Masas , ARN Mensajero/metabolismo , Estadísticas no Paramétricas , Superóxido Dismutasa/genética , Adulto Joven
5.
Cytogenet Genome Res ; 147(1): 10-6, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-26658296

RESUMEN

Karyotyping and aCGH are routinely used to identify genetic determinants of major congenital malformations (MCMs) in fetal deaths or terminations of pregnancy after prenatal diagnosis. Pathogenic rearrangements are found with a variable rate of 9-39% for aCGH. We collected 33 fetuses, 9 with a single MCM and 24 with MCMs involving 2-4 organ systems. aCGH revealed copy number variants in 14 out of 33 cases (42%). Eight were classified as pathogenic which account for a detection rate of 24% (8/33) considering fetuses with 1 or more MCMs and 33% (8/24) taking into account fetuses with multiple malformations only. Three of the pathogenic variants were known microdeletion syndromes (22q11.21 deletion, central chromosome 22q11.21 deletion, and TAR syndrome) and 5 were large rearrangements, adding up to >11 Mb per subject and comprising strong phenotype-related genes. One of those was a de novo complex rearrangement, and the remaining 4 duplications and 2 deletions were 130-900 kb in size, containing 1-7 genes, and were classified as variants of unknown clinical significance. Our study confirms aCGH as a powerful technique to ascertain the genetic etiology of fetal major congenital malformations.


Asunto(s)
Anomalías Múltiples/diagnóstico , Deleción Cromosómica , Duplicación Cromosómica , Hibridación Genómica Comparativa/estadística & datos numéricos , Variaciones en el Número de Copia de ADN , Anomalías Múltiples/genética , Anomalías Múltiples/patología , Autopsia , Femenino , Feto , Genotipo , Humanos , Cariotipificación , Fenotipo , Embarazo , Diagnóstico Prenatal/estadística & datos numéricos
6.
BMC Med Genet ; 16: 16, 2015 Mar 19.
Artículo en Inglés | MEDLINE | ID: mdl-25927548

RESUMEN

BACKGROUND: Hereditary ataxias are a heterogeneous group of neurodegenerative disorders, where exome sequencing may become an important diagnostic tool to solve clinically or genetically complex cases. METHODS: We describe an Italian family in which three sisters were affected by ataxia with postural/intentional myoclonus and involuntary movements at onset, which persisted during the disease. Oculomotor apraxia was absent. Clinical and genetic data did not allow us to exclude autosomal dominant or recessive inheritance and suggest a disease gene. RESULTS: Exome sequencing identified a homozygous c.6292C > T (p.Arg2098*) mutation in SETX and a heterozygous c.346G > A (p.Gly116Arg) mutation in AFG3L2 shared by all three affected individuals. A fourth sister (II.7) had subclinical myoclonic jerks at proximal upper limbs and perioral district, confirmed by electrophysiology, and carried the p.Gly116Arg change. Three siblings were healthy. Pathogenicity prediction and a yeast-functional assay suggested p.Gly116Arg impaired m-AAA (ATPases associated with various cellular activities) complex function. CONCLUSIONS: Exome sequencing is a powerful tool in identifying disease genes. We identified an atypical form of Ataxia with Oculoapraxia type 2 (AOA2) with myoclonus at onset associated with the c.6292C > T (p.Arg2098*) homozygous mutation. Because the same genotype was described in six cases from a Tunisian family with a typical AOA2 without myoclonus, we speculate this latter feature is associated with a second mutated gene, namely AFG3L2 (p.Gly116Arg variant). We suggest that variant phenotypes may be due to the combined effect of different mutated genes associated to ataxia or related disorders, that will become more apparent as the costs of exome sequencing progressively will reduce, amplifying its diagnostics use, and meanwhile proposing significant challenges in the interpretation of the data.


Asunto(s)
Proteasas ATP-Dependientes/genética , Mutación , Mioclonía/complicaciones , ARN Helicasas/genética , Degeneraciones Espinocerebelosas/complicaciones , Degeneraciones Espinocerebelosas/genética , Proteasas ATP-Dependientes/química , ATPasas Asociadas con Actividades Celulares Diversas , Adolescente , Adulto , Secuencia de Aminoácidos , Animales , Niño , ADN Helicasas , Análisis Mutacional de ADN , Exoma/genética , Femenino , Homocigoto , Humanos , Datos de Secuencia Molecular , Enzimas Multifuncionales , Linaje , Postura , Degeneraciones Espinocerebelosas/fisiopatología , Adulto Joven
7.
J Med Genet ; 50(8): 543-51, 2013 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-23749989

RESUMEN

BACKGROUND AND AIM: We identified a balanced de novo translocation involving chromosomes Xq25 and 8q24 in an eight year-old girl with a non-progressive form of congenital ataxia, cognitive impairment and cerebellar hypoplasia. METHODS AND RESULTS: Breakpoint definition showed that the promoter of the Protein Tyrosine Kinase 2 (PTK2, also known as Focal Adhesion Kinase, FAK) gene on chromosome 8q24.3 is translocated 2 kb upstream of the THO complex subunit 2 (THOC2) gene on chromosome Xq25. PTK2 is a well-known non-receptor tyrosine kinase whereas THOC2 encodes a component of the evolutionarily conserved multiprotein THO complex, involved in mRNA export from nucleus. The translocation generated a sterile fusion transcript under the control of the PTK2 promoter, affecting expression of both PTK2 and THOC2 genes. PTK2 is involved in cell adhesion and, in neurons, plays a role in axonal guidance, and neurite growth and attraction. However, PTK2 haploinsufficiency alone is unlikely to be associated with human disease. Therefore, we studied the role of THOC2 in the CNS using three models: 1) THOC2 ortholog knockout in C.elegans which produced functional defects in specific sensory neurons; 2) Thoc2 knockdown in primary rat hippocampal neurons which increased neurite extension; 3) Thoc2 knockdown in neuronal stem cells (LC1) which increased their in vitro growth rate without modifying apoptosis levels. CONCLUSION: We suggest that THOC2 can play specific roles in neuronal cells and, possibly in combination with PTK2 reduction, may affect normal neural network formation, leading to cognitive impairment and cerebellar congenital hypoplasia.


Asunto(s)
Cerebelo/anomalías , Cromosomas Humanos Par 8/genética , Quinasa 1 de Adhesión Focal/genética , Malformaciones del Sistema Nervioso/genética , Trastornos Psicomotores/genética , Proteínas de Unión al ARN/genética , Translocación Genética , Animales , Caenorhabditis elegans/genética , Línea Celular Transformada , Niño , Discapacidades del Desarrollo/complicaciones , Discapacidades del Desarrollo/genética , Femenino , Fusión Génica , Humanos , Masculino , Ratones , Ratones Endogámicos C57BL , Malformaciones del Sistema Nervioso/complicaciones , Trastornos Psicomotores/complicaciones , Ratas
8.
Hum Mutat ; 33(1): 198-208, 2012 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-22006793

RESUMEN

A recent challenge for investigators studying the progressive neurological disease ataxia-telangiectasia (A-T) is to identify mutations whose effects might be alleviated by mutation-targeted therapies. We studied ATM mutations in eight families of Japanese A-T patients (JPAT) and were able to identify all 16 mutations. The probands were compound heterozygotes in seven families, and one (JPAT2) was homozygous for a frameshift mutation. All mutations--four frameshift, two nonsense, four large genomic deletions, and six affecting splicing--were novel except for c.748C>T found in family JPAT6 and c.2639-384A>G found in family JPAT11/12. Using an established lymphoblastoid cell line (LCL) of patient JPAT11, ATM protein was restored to levels approaching wild type by exposure to an antisense morpholino oligonucleotide designed to correct a pseudoexon splicing mutation. In addition, in an LCL from patient JPAT8/9, a heterozygous carrier of a nonsense mutation, ATM levels could also be partially restored by exposure to readthrough compounds (RTCs): an aminoglycoside, G418, and a novel small molecule identified in our laboratory, RTC13. Taken together, our results suggest that screening and functional characterization of the various sorts of mutations affecting the ATM gene can lead to better identification of A-T patients who are most likely to benefit from rapidly developing mutation-targeted therapeutic technologies.


Asunto(s)
Ataxia Telangiectasia/genética , Proteínas de Ciclo Celular/genética , Codón sin Sentido , Proteínas de Unión al ADN/genética , Mutación del Sistema de Lectura , Proteínas Serina-Treonina Quinasas/genética , Eliminación de Secuencia , Proteínas Supresoras de Tumor/genética , Aminoglicósidos/farmacología , Aminoglicósidos/uso terapéutico , Pueblo Asiatico , Ataxia Telangiectasia/tratamiento farmacológico , Proteínas de la Ataxia Telangiectasia Mutada , Secuencia de Bases , Proteínas de Ciclo Celular/agonistas , Línea Celular , Análisis Mutacional de ADN , Proteínas de Unión al ADN/agonistas , Exones , Gentamicinas/farmacología , Gentamicinas/uso terapéutico , Heterocigoto , Humanos , Datos de Secuencia Molecular , Terapia Molecular Dirigida , Morfolinos/farmacología , Morfolinos/uso terapéutico , Oligodesoxirribonucleótidos Antisentido/farmacología , Oligodesoxirribonucleótidos Antisentido/uso terapéutico , Linaje , Empalme del ARN , Linfocitos T/efectos de los fármacos , Linfocitos T/metabolismo , Linfocitos T/patología , Proteínas Supresoras de Tumor/agonistas
9.
Neurogenetics ; 13(3): 205-14, 2012 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-22552818

RESUMEN

Megalencephalic leukoencephalopathy with subcortical cysts is an autosomal recessive disease characterized by early onset macrocephaly; developmental delay; motor disability in the form of progressive spasticity and ataxia; seizures; cognitive decline; and characteristic magnetic resonance imaging findings. Mutations in two genes, MLC1 (22q13.33; 75 % of patients) or HEPACAM (11q24; 20 % of patients), are associated with the disease. We describe an adult MLC patient with moderate clinical symptoms. MLC1 cDNA analysis from lymphoblasts showed a strong transcript reduction and identified a 246-bp pseudoexon containing a premature stop codon between exons 10 and 11, due to a homozygous c.895-226 T>G deep-intronic mutation. This category of mutations is often overlooked, being outside of canonically sequenced genomic regions. The mutation c.895-226 T>G has a leaky effect on splicing leaving part of the full-length transcript. Its role on splicing was confirmed using a minigene assay and an antisense morpholinated oligonucleotide targeted to the aberrant splice site in vitro, which partially abrogated the mutation effect.


Asunto(s)
Quistes/diagnóstico , Quistes/genética , Enfermedades Desmielinizantes del Sistema Nervioso Central Hereditarias/diagnóstico , Enfermedades Desmielinizantes del Sistema Nervioso Central Hereditarias/genética , Intrones , Proteínas de la Membrana/genética , Mutación , Oligonucleótidos Antisentido/genética , Encéfalo/patología , Análisis Mutacional de ADN , Exones , Salud de la Familia , Femenino , Humanos , Linfocitos/citología , Imagen por Resonancia Magnética/métodos , Masculino , Repeticiones de Microsatélite/genética , Persona de Mediana Edad , Modelos Genéticos , Linaje , Empalme del ARN , Análisis de Secuencia de ADN
11.
Am J Med Genet A ; 158A(10): 2571-6, 2012 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-22903806

RESUMEN

We report on a child with a de novo deletion of approximately 12 Mb detected through array comparative genomic hybridization (CGH). The deletion involved chromosome bands 13q12.3-13q14.11 and determined the loss of ≥50 genes. A second deletion on chromosome 12p11.3p11.22 of 43-167 kb, including about 12 genes, was unlikely of clinical relevance because inherited from the asymptomatic father. The child had developmental delay, dysmorphisms, and many features reminiscent of ataxia-telangiectasia (A-T), as cerebellar ataxia, oculocutaneus telangiectasia, and recurrent upper airway infections. Atraumatic fractures of the metatarsus were noted. Moreover, this is a rare case of 13q deletion syndrome associated with peripheral blood white cells radiosensitivity to bleomycin, reminiscent of what previously reported on X-ray hypersensitivity of fibroblasts from patients with alterations of this chromosome. The immunological evaluation revealed increased IgM serum levels and a low proliferative response to mitogens, PHA, and CD3 cross-linking (CD3 XL). After 12 years of age only a mild dysmetria persisted, while the proliferative response to mitogens became normal by 9 years of age.


Asunto(s)
Deleción Cromosómica , Trastornos de los Cromosomas/genética , Trastornos de los Cromosomas/patología , Cromosomas Humanos Par 13/genética , Genes BRCA2 , Adolescente , Ataxia/genética , Ataxia/patología , Cerebelo/anomalías , Cerebelo/patología , Trastornos de los Cromosomas/inmunología , Cromosomas Humanos Par 13/inmunología , Hibridación Genómica Comparativa , Discapacidades del Desarrollo/genética , Discapacidades del Desarrollo/patología , Humanos , Inmunoglobulina M/sangre , Hibridación Fluorescente in Situ , Masculino , Malformaciones del Sistema Nervioso/genética , Malformaciones del Sistema Nervioso/patología , Fenotipo
12.
Sci Rep ; 10(1): 20182, 2020 11 19.
Artículo en Inglés | MEDLINE | ID: mdl-33214630

RESUMEN

Short term treatment with low doses of glucocorticoid analogues has been shown to ameliorate neurological symptoms in Ataxia-Telangiectasia (A-T), a rare autosomal recessive multisystem disease that mainly affects the cerebellum, immune system, and lungs. Molecular mechanisms underlying this clinical observation are unclear. We aimed at evaluating the effect of dexamethasone on the induction of alternative ATM transcripts (ATMdexa1). We showed that dexamethasone cannot induce an alternative ATM transcript in control and A-T lymphoblasts and primary fibroblasts, or in an ATM-knockout HeLa cell line. We also demonstrated that some of the reported readouts associated with ATMdexa1 are due to cellular artifacts and the direct induction of γH2AX by dexamethasone via DNA-PK. Finally, we suggest caution in interpreting dexamethasone effects in vitro for the results to be translated into a rational use of the drug in A-T patients.


Asunto(s)
Empalme Alternativo/efectos de los fármacos , Proteínas de la Ataxia Telangiectasia Mutada/genética , Ataxia Telangiectasia/patología , Dexametasona/farmacología , Empalme Alternativo/genética , Ataxia Telangiectasia/tratamiento farmacológico , Ataxia Telangiectasia/genética , Proteínas de la Ataxia Telangiectasia Mutada/metabolismo , Línea Celular , Fibroblastos/efectos de los fármacos , Fibroblastos/patología , Técnicas de Inactivación de Genes , Células HeLa , Histonas/metabolismo , Humanos , Límite de Detección , Fosforilación/efectos de los fármacos
13.
Cytometry A ; 73(6): 508-16, 2008 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-18431795

RESUMEN

Ataxia telangiectasia (A-T) is a progressive neurodegenerative disease with onset in early childhood, caused by mutations in the ATM (ataxia-telangiectasia mutated) gene. Diagnosis relies on laboratory tests showing high levels of serum alphafetoprotein, cell sensitivity to ionizing radiation (IR) and absence or reduced levels of ATM protein. Many tests, however, are not sufficiently sensitive or specific for A-T, have long turnaround times, or require large blood samples. This prompted us to develop a new flow cytometry method for the diagnosis of A-T based on the measurement of histone H2AX phosphorylation. We established normal ranges of histone H2AX phosphorylation after 2 Gy IR by testing T-cell lines, lymphoblastoid cell lines (LCLs) and/or peripheral blood mononuclear cells (PBMCs) or both from 20 genetically proven A-T and 46 control donors. To further evaluate the specificity and sensitivity of the test, we analyzed cells from 19 patients suspected of having A-T, and from one Friedreich Ataxia, one Ataxia with Oculomotor Apraxia type 2, and one Nijmegen Breakage Syndrome patients. Phosphorylated histone H2AX mean fluorescence intensity of irradiated A-T cells was significantly lower than that of healthy donors. The intrastaining, intraassay, and interassay imprecisions were

Asunto(s)
Ataxia Telangiectasia/diagnóstico , Citometría de Flujo/métodos , Histonas/metabolismo , Proteínas de la Ataxia Telangiectasia Mutada , Proteínas de Ciclo Celular/genética , Proteínas de Unión al ADN/genética , Diagnóstico Diferencial , Histonas/efectos de la radiación , Humanos , Immunoblotting , Leucocitos Mononucleares/metabolismo , Leucocitos Mononucleares/efectos de la radiación , Fosforilación , Proteínas Serina-Treonina Quinasas/genética , Estándares de Referencia , Reproducibilidad de los Resultados , Sensibilidad y Especificidad , Proteínas Supresoras de Tumor/genética
14.
J Mol Diagn ; 20(3): 289-297, 2018 05.
Artículo en Inglés | MEDLINE | ID: mdl-29462666

RESUMEN

Spinocerebellar ataxia (SCA) types 1, 2, 3, 6, and 7, associated with a (CAG)n repeat expansion in coding sequences, are the most prevalent autosomal dominant ataxias worldwide (approximately 60% of the cases). In addition, the phenotype of SCA2 expansions has been now extended to Parkinson disease and amyotrophic lateral sclerosis. Their diagnosis is currently based on a PCR to identify small expanded alleles, followed by a second-level test whenever a false normal homozygous or a CAT interruption in SCA1 needs to be verified. Next-generation sequencing still does not allow efficient detection of these repeats. Here, we show the efficacy of a novel, rapid, and cost-effective method to identify and size pathogenic expansions in SCA1, 2, 3, 6, and 7 and recognize large alleles or interruptions without a second-level test. Twenty-five healthy controls and 33 expansion carriers were analyzed: alleles migrated consistently in different PCRs and capillary runs, and homozygous individuals were always distinguishable from heterozygous carriers of both common and large (>100 repeats) pathogenic CAG expansions. Repeat number could be calculated counting the number of peaks, except for the largest SCA2 and SCA7 alleles. Interruptions in SCA1 were always visible. Overall, our method allows a simpler, cost-effective, and sensibly faster SCA diagnostic protocol compared with the standard technique and to the still unadapted next-generation sequencing.


Asunto(s)
Electroforesis Capilar/métodos , Pruebas Genéticas/métodos , Reacción en Cadena de la Polimerasa/métodos , Ataxias Espinocerebelosas/diagnóstico , Ataxias Espinocerebelosas/genética , Estudios de Casos y Controles , Heterocigoto , Homocigoto , Humanos
15.
Clin Biochem ; 40(9-10): 666-70, 2007 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-17466964

RESUMEN

OBJECTIVE: To evaluate an in vivo pro-oxidant state in patients with ataxia telangiectasia (AT). METHODS: A set of oxidative stress endpoints were measured in 9 AT homozygotes, 16 AT heterozygotes (parents) and 83 controls (grouped in age ranges as for patients and parents, respectively). The following analytes were measured: (a) leukocyte 8-hydroxy-2'-deoxyguanosine (8-OHdG); (b) blood glutathione (GSSG and GSH); and (c) plasma levels of glyoxal (Glx) and methylglyoxal (MGlx). RESULTS: AT patients displayed a significant decrease in blood GSSG (p=0.012) and in MGlx plasma concentrations (p=0.012). A non-significant decrease in the GSSG:GSH ratio (p=0.1) and a non-significant increase in 8-OHdG and Glx levels were observed in AT patients vs. young controls (age range 4-35 years). AT heterozygotes failed to display any significant changes vs. adult controls (age range 36-68 years). CONCLUSION: No significant increase in oxidative stress biomarkers was detected in blood from AT patients. The decrease in GSSG and MGlx levels in AT patients may suggest an adaptive response to a pro-oxidant state in AT-related target organs.


Asunto(s)
Ataxia Telangiectasia/sangre , Glutatión/sangre , Estrés Oxidativo/fisiología , 8-Hidroxi-2'-Desoxicoguanosina , Adaptación Fisiológica , Adolescente , Adulto , Niño , Preescolar , Daño del ADN , Desoxiguanosina/análogos & derivados , Desoxiguanosina/sangre , Femenino , Glioxal/sangre , Humanos , Masculino , Piruvaldehído/sangre
16.
Eur J Med Genet ; 60(4): 224-227, 2017 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-28159702

RESUMEN

We report on a 58-year old woman with microcephaly, mild dysmorphic features, bilateral keratoconus, digital abnormalities, short stature and mild cognitive delay. Except for keratoconus, the phenotype was suggestive for Feingold syndrome type 2 (FGLDS2, MIM 614326), a rare autosomal dominant disorder described in six patients worldwide, due to the haploinsufficiency of MIR17HG, a micro RNA encoding gene. Karyotype showed a de novo deletion on chromosome 13q, further defined by array-Comparative Genomic Hybridization (a-CGH) to a 17.2-Mb region. The deletion included MIR17HG, as expected by the FGLDS2 phenotype, and twelve genes from the keratoconus type 7 locus. Because our patient presented with keratoconus, we propose she further refines disease genes at this locus. Among previously suggested candidates, we exclude DOCK9 and STK24, and propose as best candidates IPO5, DNAJC3, MBNL2 and RAP2A. In conclusion, we report a novel phenotypic association of Feingold syndrome type 2 and keratoconus, a likely contiguous gene syndrome due to a large genomic deletion on 13q spanning MIR17HG and a still to be identified gene for keratoconus.


Asunto(s)
Cromosomas Humanos Par 13 , Párpados/anomalías , Discapacidad Intelectual/genética , Queratocono/genética , Deformidades Congénitas de las Extremidades/genética , Microcefalia/genética , Fístula Traqueoesofágica/genética , Anomalías Múltiples , Deleción Cromosómica , Mapeo Cromosómico , Hibridación Genómica Comparativa , Citogenética , Femenino , Eliminación de Gen , Haploinsuficiencia , Humanos , Discapacidad Intelectual/complicaciones , Cariotipificación , Queratocono/complicaciones , Deformidades Congénitas de las Extremidades/complicaciones , Masculino , Microcefalia/complicaciones , Persona de Mediana Edad , Fenotipo , Reacción en Cadena en Tiempo Real de la Polimerasa , Fístula Traqueoesofágica/complicaciones
17.
Eur J Paediatr Neurol ; 21(3): 475-484, 2017 May.
Artículo en Inglés | MEDLINE | ID: mdl-28027854

RESUMEN

BACKGROUND: More than 100 X-linked intellectual disability (X-LID) genes have been identified to be involved in 10-15% of intellectual disability (ID). METHOD: To identify novel possible candidates, we selected 18 families with a male proband affected by isolated or syndromic ID. Pedigree and/or clinical presentation suggested an X-LID disorder. After exclusion of known genetic diseases, we identified seven cases whose mother showed a skewed X-inactivation (>80%) that underwent whole exome sequencing (WES, 50X average depth). RESULTS: WES allowed to solve the genetic basis in four cases, two of which (Coffin-Lowry syndrome, RPS6K3 gene; ATRX syndrome, ATRX gene) had been missed by previous clinical/genetics tests. One further ATRX case showed a complex phenotype including pontocerebellar atrophy (PCA), possibly associated to an unidentified PCA gene mutation. In a case with suspected Lujan-Fryns syndrome, a c.649C>T (p.Pro217Ser) MECP2 missense change was identified, likely explaining the neurological impairment, but not the marfanoid features, which were possibly associated to the p.Thr1020Ala variant in fibrillin 1. Finally, a c.707T>G variant (p.Phe236Cys) in the DMD gene was identified in a patient retrospectively recognized to be affected by Becker muscular dystrophy (BMD, OMIM 300376). CONCLUSION: Overall, our data show that WES may give hints to solve complex ID phenotypes with a likely X-linked transmission, and that a significant proportion of these orphan conditions might result from concomitant mutations affecting different clinically associated genes.


Asunto(s)
Exoma/genética , Discapacidad Intelectual/genética , Inactivación del Cromosoma X/genética , Adolescente , Niño , Síndrome de Coffin-Lowry/genética , Anomalías Craneofaciales/genética , Genes Ligados a X/genética , Predisposición Genética a la Enfermedad , Humanos , Masculino , Síndrome de Marfan/genética , Discapacidad Intelectual Ligada al Cromosoma X/genética , Mutación , Linaje , Fenotipo , Estudios Retrospectivos , Análisis de Secuencia de ADN , Talasemia alfa/genética
18.
Hum Mutat ; 27(10): 1061, 2006 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-16941484

RESUMEN

In patients affected by Ataxia-Telangiectasia (A-T), mutations in the ATM gene lead to loss-of-function alleles. Nonsense, splice-site variants, small insertions or deletions (frameshifts) and missense are the most commonly found mutations. Large genomic deletions (LGDs) are rare (approximately 1%) but can lead to the same phenotype. In compound heterozygotes, deletions are not detected by most screening strategies. We analysed the ATM gene in 12 unrelated Italian A-T patients and identified all 24 mutated alleles. Twelve mutations were novel. Standardized SNP and STR haplotyping followed by DHPLC screening of genomic DNA, allowed all but three mutations to be detected (approximately 87.5%). The remaining mutations required RT-PCR analysis of ATM transcript and Southern blotting of genomic DNA. We found three LGDs: one of 8.5 and two identical of 18 kb spanning exons 32-36 and 21-29, respectively. The breakpoints of these deletions were sequenced in an attempt to understand the mechanisms of mutations; both deletions involved regions rich in repeated elements.


Asunto(s)
Ataxia Telangiectasia/genética , Proteínas de Ciclo Celular/genética , Proteínas de Unión al ADN/genética , Mutación/genética , Proteínas Serina-Treonina Quinasas/genética , Proteínas Supresoras de Tumor/genética , Ataxia Telangiectasia/etnología , Proteínas de la Ataxia Telangiectasia Mutada , Secuencia de Bases , Southern Blotting , Cromatografía Líquida de Alta Presión/métodos , Análisis Mutacional de ADN/métodos , Exones/genética , Salud de la Familia , Femenino , Eliminación de Gen , Haplotipos/genética , Humanos , Italia , Masculino , Modelos Genéticos , Datos de Secuencia Molecular , Polimorfismo Genético , Homología de Secuencia de Ácido Nucleico , Programas Informáticos
19.
J Neurol ; 263(11): 2170-2178, 2016 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-27488863

RESUMEN

Thiamine (vitamin B1) is a cofactor of fundamental enzymes of cell energetic metabolism; its deficiency causes disorders affecting both the peripheral and central nervous system. Previous studies reported low thiamine levels in cerebrospinal fluid and pyruvate dehydrogenase dysfunction in Friedreich ataxia (FRDA). We investigated the effect of long-term treatment with thiamine in FRDA, evaluating changes in neurological symptoms, echocardiographic parameters, and plasma FXN mRNA levels. Thirty-four consecutive FRDA patients have been continuously treated with intramuscular thiamine 100 mg twice a week and have been assessed with the Scale for the Assessment and Rating of Ataxia (SARA) at baseline, after 1 month, and then every 3 months during treatment. Thiamine administration ranged from 80 to 930 days and was effective in improving total SARA scores from 26.6 ± 7.7 to 21.5 ± 6.2 (p < 0.02). Moreover, deep tendon reflexes reappeared in 57 % of patients with areflexia at baseline, and swallowing improved in 63 % of dysphagic patients. Clinical improvement was stable in all patients, who did not show worsening even after 2 years of treatment. In a subgroup of 13 patients who performed echocardiogram before and during treatment, interventricular septum thickness reduced significantly (p < 0.02). Frataxin mRNA blood levels were modestly increased in one-half of treated patients. We suppose that a focal thiamine deficiency may contribute to a selective neuronal damage in the areas involved in FRDA. Further studies are mandatory to evaluate thiamine role on FXN regulation, to exclude placebo effect, to verify our clinical results, and to confirm restorative and neuroprotective action of thiamine in FRDA.


Asunto(s)
Ataxia de Friedreich/tratamiento farmacológico , Tiamina/uso terapéutico , Complejo Vitamínico B/uso terapéutico , Adulto , Análisis de Varianza , Ecocardiografía , Femenino , Ataxia de Friedreich/genética , Expresión Génica/efectos de los fármacos , Humanos , Estudios Longitudinales , Masculino , Persona de Mediana Edad , Examen Neurológico , Factores de Transcripción Paired Box/genética , Factores de Transcripción Paired Box/metabolismo , ARN Mensajero , Factores de Tiempo
20.
J Neurol Sci ; 352(1-2): 99-104, 2015 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-25873210

RESUMEN

Mutations in COL4A1, encoding one of the six collagen type IV proteins, cover a wide spectrum of autosomal dominant overlapping phenotypes including porencephaly, small-vessel disease and hemorrhagic stroke, leukoencephalopathy, hereditary angiopathy with nephropathy, aneurysms and muscle cramp (HANAC) syndrome, and Walker-Warburg syndrome. Over 50 mutations are known, mainly being missense changes. Intra- and inter-familial variability has been reported. We studied two Italian families in which the proband had a clinical diagnosis of COL4A1-related disorder. We found two novel mutations (c.1249G>C; p.Gly417Arg and c.2662G>C; p.Gly888Arg). Both involved highly conserved amino acids and were predicted as being deleterious by bioinformatics tools. The c.1249G>C (p.Gly417Arg) segregated in four subjects with variable neurological phenotypes, namely leukoencephalopathy with muscle symptoms, brain small-vessel disease, and mild infantile encephalopathy. A fourth case was a carrier of the mutation without any neurological symptoms and an MRI with a specific white matter anomaly. The c.2662G>C (p.Gly888Arg) mutation was de novo in the proband. After a temporary motor impairment at age 14, the subject complained of mild imbalance at age 30, during the third trimester of her twin pregnancy, when an anomaly of the left brain hemisphere was documented in one fetus. Both her male dizygotic twins presented a severe motor delay, early convulsions, and leukoencephalopathy, and were carriers of the mutation. In summary, we confirm that high intra-familial variability of COL4A1 mutations with very mild phenotypes, the apparent incomplete penetrance, and de novo changes may become a "dilemma" for clinicians and genetic counselors.


Asunto(s)
Encéfalo/patología , Colágeno Tipo IV/genética , Leucoencefalopatías/genética , Imagen por Resonancia Magnética , Trastornos Motores/genética , Adolescente , Adulto , Familia , Femenino , Humanos , Italia , Leucoencefalopatías/fisiopatología , Masculino , Trastornos Motores/fisiopatología , Mutación Missense , Linaje , Porencefalia , Embarazo , Arteria Retiniana/anomalías , Arteria Retiniana/fisiopatología , Hemorragia Retiniana/genética , Hemorragia Retiniana/fisiopatología , Espasmos Infantiles/genética , Espasmos Infantiles/fisiopatología
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