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1.
J Chem Phys ; 161(6)2024 Aug 14.
Artículo en Inglés | MEDLINE | ID: mdl-39132794

RESUMEN

Policy-guided Monte Carlo is an adaptive method to simulate classical interacting systems. It adjusts the proposal distribution of the Metropolis-Hastings algorithm to maximize the sampling efficiency, using a formalism inspired by reinforcement learning. In this work, we first extend the policy-guided method to deal with a general state space, comprising, for instance, both discrete and continuous degrees of freedom, and then apply it to a few paradigmatic models of glass-forming mixtures. We assess the efficiency of a set of physically inspired moves whose proposal distributions are optimized through on-policy learning. Compared to conventional Monte Carlo methods, the optimized proposals are two orders of magnitude faster for an additive soft sphere mixture but yield a much more limited speed-up for the well-studied Kob-Andersen model. We discuss the current limitations of the method and suggest possible ways to improve it.

2.
J Chem Phys ; 156(9): 094503, 2022 Mar 07.
Artículo en Inglés | MEDLINE | ID: mdl-35259884

RESUMEN

The dynamics of glass-forming liquids display several outstanding features, such as two-step relaxation and dynamic heterogeneities, which are difficult to predict quantitatively from first principles. In this work, we revisit a simple theoretical model of the ß-relaxation, i.e., the first step of the relaxation dynamics. The model, first introduced by Cavagna et al. [J. Phys. A: Math. Gen. 36, 10721 (2003)], describes the dynamics of the system in the neighborhood of a saddle point of the potential energy surface. We extend the model to account for density-density correlation functions and for the four-point dynamic susceptibility. We obtain analytical results for a simple schematic model, making contact with related results for p-spin models and with the predictions of inhomogeneous mode-coupling theory. Building on recent computational advances, we also explicitly compare the model predictions against overdamped Langevin dynamics simulations of a glass-forming liquid close to the mode-coupling crossover. The agreement is quantitative at the level of single-particle dynamic properties only up to the early ß-regime. Due to its inherent harmonic approximation, however, the model is unable to predict the dynamics on the time scale relevant for structural relaxation. Nonetheless, our analysis suggests that the agreement with the simulations may be largely improved if the modes' spatial localization is properly taken into account.

3.
J Chem Phys ; 157(20): 204503, 2022 Nov 28.
Artículo en Inglés | MEDLINE | ID: mdl-36456236

RESUMEN

We consider unsupervised learning methods for characterizing the disordered microscopic structure of supercooled liquids and glasses. Specifically, we perform dimensionality reduction of smooth structural descriptors that describe radial and bond-orientational correlations and assess the ability of the method to grasp the essential structural features of glassy binary mixtures. In several cases, a few collective variables account for the bulk of the structural fluctuations within the first coordination shell and also display a clear connection with the fluctuations of particle mobility. Fine-grained descriptors that characterize the radial dependence of bond-orientational order better capture the structural fluctuations relevant for particle mobility but are also more difficult to parameterize and to interpret. We also find that principal component analysis of bond-orientational order parameters provides identical results to neural network autoencoders while having the advantage of being easily interpretable. Overall, our results indicate that glassy binary mixtures have a broad spectrum of structural features. In the temperature range we investigate, some mixtures display well-defined locally favored structures, which are reflected in bimodal distributions of the structural variables identified by dimensionality reduction.

4.
J Chem Phys ; 152(14): 144502, 2020 Apr 14.
Artículo en Inglés | MEDLINE | ID: mdl-32295366

RESUMEN

We present an information-theoretic approach inspired by distributional clustering to assess the structural heterogeneity of particulate systems. Our method identifies communities of particles that share a similar local structure by harvesting the information hidden in the spatial variation of two- or three-body static correlations. This corresponds to an unsupervised machine learning approach that infers communities solely from the particle positions and their species. We apply this method to three models of supercooled liquids and find that it detects subtle forms of local order, as demonstrated by a comparison with the statistics of Voronoi cells. Finally, we analyze the time-dependent correlation between structural communities and particle mobility and show that our method captures relevant information about glassy dynamics.

5.
Proc Natl Acad Sci U S A ; 114(43): 11356-11361, 2017 10 24.
Artículo en Inglés | MEDLINE | ID: mdl-29073056

RESUMEN

Liquids relax extremely slowly on approaching the glass state. One explanation is that an entropy crisis, because of the rarefaction of available states, makes it increasingly arduous to reach equilibrium in that regime. Validating this scenario is challenging, because experiments offer limited resolution, while numerical studies lag more than eight orders of magnitude behind experimentally relevant timescales. In this work, we not only close the colossal gap between experiments and simulations but manage to create in silico configurations that have no experimental analog yet. Deploying a range of computational tools, we obtain four estimates of their configurational entropy. These measurements consistently confirm that the steep entropy decrease observed in experiments is also found in simulations, even beyond the experimental glass transition. Our numerical results thus extend the observational window into the physics of glasses and reinforce the relevance of an entropy crisis for understanding their formation.

6.
Eur Phys J E Soft Matter ; 41(5): 62, 2018 May 17.
Artículo en Inglés | MEDLINE | ID: mdl-29774433

RESUMEN

The physical behavior of glass-forming liquids presents complex features of both dynamic and thermodynamic nature. Some studies indicate the presence of thermodynamic anomalies and of crossovers in the dynamic properties, but their origin and degree of universality is difficult to assess. Moreover, conventional simulations are barely able to cover the range of temperatures at which these crossovers usually occur. To address these issues, we simulate the Kob-Andersen Lennard-Jones mixture using efficient protocols based on multi-CPU and multi-GPU parallel tempering. Our setup enables us to probe the thermodynamics and dynamics of the liquid at equilibrium well below the critical temperature of the mode-coupling theory, [Formula: see text]. We find that below [Formula: see text] the analysis is hampered by partial crystallization of the metastable liquid, which nucleates extended regions populated by large particles arranged in an fcc structure. By filtering out crystalline samples, we reveal that the specific heat grows in a regular manner down to [Formula: see text] . Possible thermodynamic anomalies suggested by previous studies can thus occur only in a region of the phase diagram where the system is highly metastable. Using the equilibrium configurations obtained from the parallel tempering simulations, we perform molecular dynamics and Monte Carlo simulations to probe the equilibrium dynamics down to [Formula: see text]. A temperature-derivative analysis of the relaxation time and diffusion data allows us to assess different dynamic scenarios around [Formula: see text]. Hints of a dynamic crossover come from analysis of the four-point dynamic susceptibility. Finally, we discuss possible future numerical strategies to clarify the nature of crossover phenomena in glass-forming liquids.

7.
Proc Natl Acad Sci U S A ; 111(32): 11668-72, 2014 Aug 12.
Artículo en Inglés | MEDLINE | ID: mdl-25071188

RESUMEN

The configurational entropy is among the key observables to characterize experimentally the formation of a glass. Physically, it quantifies the multiplicity of metastable states in which an amorphous material can be found at a given temperature, and its temperature dependence provides a major thermodynamic signature of the glass transition, which is experimentally accessible. Measurements of the configurational entropy require, however, some approximations that have often led to ambiguities and contradictory results. Here we implement a novel numerical scheme to measure the configurational entropy Σ(T) in supercooled liquids, using a direct determination of the free-energy cost to localize the system within a single metastable state at temperature T. For two prototypical glass-forming liquids, we find that Σ(T) disappears discontinuously above a temperature Tc, which is slightly lower than the usual estimate of the onset temperature for glassy dynamics. This observation is in good agreement with theoretical expectations but contrasts sharply with alternative numerical methods. While the temperature dependence of Σ(T) correlates with the glass fragility, we show that the validity of the Adam-Gibbs relation (relating configurational entropy to structural relaxation time) established in earlier numerical studies is smaller than previously thought, potentially resolving an important conflict between experiments and simulations.

8.
Phys Rev Lett ; 116(23): 238002, 2016 Jun 10.
Artículo en Inglés | MEDLINE | ID: mdl-27341260

RESUMEN

We implement and optimize a particle-swap Monte Carlo algorithm that allows us to thermalize a polydisperse system of hard spheres up to unprecedentedly large volume fractions, where previous algorithms and experiments fail to equilibrate. We show that no glass singularity intervenes before the jamming density, which we independently determine through two distinct nonequilibrium protocols. We demonstrate that equilibrium fluid and nonequilibrium jammed states can have the same density, showing that the jamming transition cannot be the end point of the fluid branch.

9.
Phys Rev Lett ; 113(15): 157801, 2014 Oct 10.
Artículo en Inglés | MEDLINE | ID: mdl-25375744

RESUMEN

We investigate the connection between local structure and dynamical heterogeneity in supercooled liquids. Through the study of four different models, we show that the correlation between a particle's mobility and the degree of local order in nearby regions is highly system dependent. Our results suggest that the correlation between local structure and dynamics is weak or absent in systems that conform well to the mean-field picture of glassy dynamics and strong in those that deviate from this paradigm. Finally, we investigate the role of order-agnostic point-to-set correlations and reveal that they provide similar information content to local structure measures, at least in the system where local order is most pronounced.

10.
J Chem Phys ; 138(12): 12A539, 2013 Mar 28.
Artículo en Inglés | MEDLINE | ID: mdl-23556790

RESUMEN

We present a numerical evaluation of the three-point static correlations functions of the Kob-Andersen Lennard-Jones binary mixture and of its purely repulsive, Weeks-Chandler-Andersen variant. In the glassy regime, the two models possess a similar pair structure, yet their dynamics differ markedly. The static triplet correlation functions S(3) indicate that the local ordering is more pronounced in the Lennard-Jones model, an observation consistent with its slower dynamics. A comparison of the direct triplet correlation functions c(3) reveals that these structural differences are due, to a good extent, to an amplification of the small discrepancies observed at the pair level. We demonstrate the existence of a broad, positive peak at small wave-vectors and angles in c(3). In this portion of k-space, slight, systematic differences between the models are observed, revealing "genuine" three-body contributions to the triplet structure. The possible role of the low-k features of c(3) and the implications of our results for dynamic theories of the glass transition are discussed.


Asunto(s)
Simulación de Dinámica Molecular , Vidrio/química
11.
J Chem Phys ; 137(18): 184904, 2012 Nov 14.
Artículo en Inglés | MEDLINE | ID: mdl-23163391

RESUMEN

We present molecular dynamics (MD) simulations results for dense fluids of ultrasoft, fully penetrable particles. These are a binary mixture and a polydisperse system of particles interacting via the generalized exponential model, which is known to yield cluster crystal phases for the corresponding monodisperse systems. Because of the dispersity in the particle size, the systems investigated in this work do not crystallize and form disordered cluster phases. The clustering transition appears as a smooth crossover to a regime in which particles are mostly located in clusters, isolated particles being infrequent. The analysis of the internal cluster structure reveals microsegregation of the big and small particles, with a strong homo-coordination in the binary mixture. Upon further lowering the temperature below the clustering transition, the motion of the clusters' centers-of-mass slows down dramatically, giving way to a cluster glass transition. In the cluster glass, the diffusivities remain finite and display an activated temperature dependence, indicating that relaxation in the cluster glass occurs via particle hopping in a nearly arrested matrix of clusters. Finally we discuss the influence of the microscopic dynamics on the transport properties by comparing the MD results with Monte Carlo simulations.

12.
J Chem Phys ; 134(24): 244514, 2011 Jun 28.
Artículo en Inglés | MEDLINE | ID: mdl-21721650

RESUMEN

We introduce an ultrasoft core model of interpenetrating polycations and polyanions, with continuous Gaussian charge distributions, to investigate polyelectrolyte aggregation in dilute and semi-dilute salt-free solutions. The model is studied by a combination of approximate theories (random phase approximation and hypernetted chain theory) and numerical simulations. The calculated pair structure, thermodynamics, phase diagram, and polyion dynamics of the symmetric version of the model (the "ultrasoft restricted primitive model" or UPRM) differ from the corresponding properties of the widely studied "restricted primitive model" (RPM) where ions have hard cores. At sufficiently low temperatures and densities, oppositely charged polyions form weakly interacting, polarizable neutral pairs. The clustering probabilities, dielectric behavior, and electrical conductivity point to a line of sharp conductor-insulator transitions in the density-temperature plane. At very low temperatures, the conductor-insulator transition line terminates near the top of a first order coexistence curve separating a high-density liquid phase from a low-density vapor phase. The simulation data hint at a tricritical behavior, reminiscent of that observed for the two-dimensional Coulomb gas, which contrasts with the Ising criticality of its three-dimensional counterpart, the RPM.


Asunto(s)
Poliaminas/química , Polímeros/química , Simulación por Computador , Modelos Químicos , Polielectrolitos , Soluciones/química , Termodinámica
13.
J Phys Condens Matter ; 30(14): 144004, 2018 Apr 11.
Artículo en Inglés | MEDLINE | ID: mdl-29460847

RESUMEN

Computer simulations give precious insight into the microscopic behavior of supercooled liquids and glasses, but their typical time scales are orders of magnitude shorter than the experimentally relevant ones. We recently closed this gap for a class of models of size polydisperse fluids, which we successfully equilibrate beyond laboratory time scales by means of the swap Monte Carlo algorithm. In this contribution, we study the interplay between compositional and geometric local orders in a model of polydisperse hard spheres equilibrated with this algorithm. Local compositional order has a weak state dependence, while local geometric order associated to icosahedral arrangements grows more markedly but only at very high density. We quantify the correlation lengths and the degree of sphericity associated to icosahedral structures and compare these results to those for the Wahnström Lennard-Jones mixture. Finally, we analyze the structure of very dense samples that partially crystallized following a pattern incompatible with conventional fractionation scenarios. The crystal structure has the symmetry of aluminum diboride and involves a subset of small and large particles with size ratio approximately equal to 0.5.

14.
Phys Rev E ; 93: 042602, 2016 04.
Artículo en Inglés | MEDLINE | ID: mdl-27176347

RESUMEN

We use molecular dynamics simulations to investigate dynamic heterogeneities and the potential energy landscape of the Gaussian core model (GCM). Despite the nearly Gaussian statistics of particles' displacements, the GCM exhibits giant dynamic heterogeneities close to the dynamic transition temperature. The divergence of the four-point susceptibility is quantitatively well described by the inhomogeneous version of the mode-coupling theory. Furthermore, the potential energy landscape of the GCM is characterized by large energy barriers, as expected from the lack of activated, hopping dynamics, and display features compatible with a geometric transition. These observations demonstrate that all major features of mean-field dynamic criticality can be observed in a physically sound, three-dimensional model.

15.
J Phys Condens Matter ; 28(41): 414015, 2016 10 19.
Artículo en Inglés | MEDLINE | ID: mdl-27546155

RESUMEN

Systems with short-range attractive and long-range repulsive interactions are able to form mesophases at sufficiently low temperatures. In two dimensions, such mesophases emerge as clusters, stripes or bubbles. Using extensive Monte Carlo simulations we investigate the static and the dynamic properties of such a cluster-forming system over a broad temperature range and for different densities. Via the static properties we analyse how ordering into close packed configurations sets in both at the level of the particles as well as at the level of the clusters. The dynamic properties provide information on how, at low temperature, the motion of individual particles is influenced by the dynamic slowing down of the clusters. Finally, we discuss the different diffusion mechanisms at play at low and intermediate densities.

16.
Artículo en Inglés | MEDLINE | ID: mdl-25679615

RESUMEN

We use large scale computer simulations and finite-size scaling analysis to study the shear rheology of dense three-dimensional suspensions of frictionless non-Brownian particles in the vicinity of the jamming transition. We perform simulations of soft repulsive particles at constant shear rate, constant pressure, and finite system size and carefully study the asymptotic limits of large system sizes and infinitely hard particle repulsion. We first focus on the asymptotic behavior of the shear viscosity in the hard particle limit. By measuring the viscosity increase over about 5 orders of magnitude, we are able to confirm its asymptotic power law divergence close to the jamming transition. However, a precise determination of the critical density and critical exponent is difficult due to the "multiscaling" behavior of the viscosity. Additionally, finite-size scaling analysis suggests that this divergence is accompanied by a growing correlation length scale, which also diverges algebraically. Finally, we study the effect of particle softness and propose a natural extension of the standard granular rheology, which we test against our simulation data. Close to the jamming transition, this "soft granular rheology" offers a detailed description of the nonlinear rheology of soft particles, which differs from earlier empirical scaling forms.

17.
Phys Rev E Stat Nonlin Soft Matter Phys ; 90(5-1): 052305, 2014 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-25493794

RESUMEN

We use large scale computer simulations of a glass-forming liquid in which a fraction c of the particles has been permanently pinned. We find that the relaxation dynamics shows an exponential dependence on c. This result can be rationalized by assuming that the configurational entropy of the pinned liquid decreases linearly upon increasing of c. This behavior is discussed in the context of thermodynamic theories for the glass transition, notably the Adam-Gibbs picture and the random first order transition theory. For intermediate and low temperatures we find that the slowing down of the dynamics due to the pinning saturates and that the cooperativity decreases with increasing c, results which indicate that in glass-forming liquids there is a dynamic crossover at which the shape of the relaxing entities changes.

18.
Phys Rev E Stat Nonlin Soft Matter Phys ; 86(3 Pt 1): 031502, 2012 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-23030918

RESUMEN

We present a comprehensive theoretical study of finite-size effects in the relaxation dynamics of glass-forming liquids. Our analysis is motivated by recent theoretical progress regarding the understanding of relevant correlation length scales in liquids approaching the glass transition. We obtain predictions both from general theoretical arguments and from a variety of specific perspectives: mode-coupling theory, kinetically constrained and defect models, and random first-order transition theory. In the last approach, we predict in particular a nonmonotonic evolution of finite-size effects across the mode-coupling crossover due to the competition between mode-coupling and activated relaxation. We study the role of competing relaxation mechanisms in giving rise to nonmonotonic finite-size effects by devising a kinetically constrained model where the proximity to the mode-coupling singularity can be continuously tuned by changing the lattice topology. We use our theoretical findings to interpret the results of extensive molecular dynamics studies of four model liquids with distinct structures and kinetic fragilities. While the less fragile model only displays modest finite-size effects, we find a more significant size dependence evolving with temperature for more fragile models, such as Lennard-Jones particles and soft spheres. Finally, for a binary mixture of harmonic spheres we observe the predicted nonmonotonic temperature evolution of finite-size effects near the fitted mode-coupling singularity, suggesting that the crossover from mode-coupling to activated dynamics is more pronounced for this model. Finally, we discuss the close connection between our results and the recent report of a nonmonotonic temperature evolution of a dynamic length scale near the mode-coupling crossover in harmonic spheres.

19.
Phys Rev E Stat Nonlin Soft Matter Phys ; 83(5 Pt 1): 051505, 2011 May.
Artículo en Inglés | MEDLINE | ID: mdl-21728538

RESUMEN

The influence of static correlations beyond the pair level on the dynamics of selected model glass formers is investigated. The pair structure, angular distribution functions, and statistics of Voronoi polyhedra of two well-known Lennard-Jones mixtures as well as of the corresponding Weeks-Chandler-Andersen variants, in which the attractive part of the potential is truncated, are compared. By means of the Voronoi construction, the atomic arrangements corresponding to the locally preferred structures of the models are identified. It is found that the growth of domains formed by interconnected locally preferred structures signals the onset of the slow-dynamics regime and allows the rationalization of the different dynamic behaviors of the models. At low temperature, the spatial extension of the structurally correlated domains, evaluated at fixed relaxation time, increases with the fragility of the models and is systematically reduced by truncating the attractions. In view of these results, proper inclusion of many-body static correlations in theories of the glass transition appears crucial for the description of the dynamics of fragile glass formers.

20.
J Phys Condens Matter ; 23(23): 234122, 2011 Jun 15.
Artículo en Inglés | MEDLINE | ID: mdl-21613709

RESUMEN

Using numerical simulations we study the slow dynamics of a colloidal hard-sphere fluid adsorbed in a matrix of disordered hard-sphere obstacles. We calculate separately the contributions to the single-particle dynamic correlation functions due to free and trapped particles. The separation is based on a Delaunay tessellation to partition the space accessible to the centres of fluid particles into percolating and disconnected voids. We find that the trapping of particles into disconnected voids of the matrix is responsible for the appearance of a nonzero long-time plateau in the single-particle intermediate scattering functions of the full fluid. The subdiffusive exponent z, obtained from the logarithmic derivative of the mean squared displacement, is essentially unaffected by the motion of trapped particles: close to the percolation transition, we determined z approximately = 0.5 for both the full fluid and the particles moving in the percolating void. Notably, the same value of z is found in single-file diffusion and is also predicted by mode-coupling theory along the diffusion-localization line. We also reveal subtle effects of dynamic heterogeneity in both the free and the trapped component of the fluid particles, and discuss microscopic mechanisms that contribute to this phenomenon.

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