Sliding Avalanches Between Nacreous Tablets.

Nacre, also known as mother of pearl, possesses extraordinary mechanical properties resulting from its intriguing hierarchical brick-and-mortar microstructures. Despite prior studies, interactions between nanoasperities during sliding still need to be elucidated. In this study, we measure slip events between nanograins of microlayers at high temporal resolution during torsion-induced sliding. We model the slips as avalanches caused by interactions of atoms on nanograin surfaces, from which power laws and scaling functions describing statistics and dynamics of slip events are studied. The largest avalanche occurs when nanograins leave each other after the maximum contact. The agreement between measurements and predictions shows that avalanches act essentially in the inhomogeneous sliding of nacreous tablets. Further insights into nanofriction provided in this work may lead to the development of nanoscale tribological systems.

Networks and Hierarchies: How Amorphous Materials Learn to Remember.

We consider the slow and athermal deformations of amorphous solids and show how the ensuing sequence of discrete plastic rearrangements can be mapped onto a directed network. The network topology reveals a set of highly connected regions joined by occasional one-way transitions. The highly connected regions include hierarchically organized hysteresis cycles and subcycles. At small to moderate strains this organization leads to near-perfect return point memory. The transitions in the network can be traced back to localized particle rearrangements (soft spots) that interact via Eshelby-type deformation fields. By linking topology to dynamics, the network representations provide new insight into the mechanisms that lead to reversible and irreversible behavior in amorphous solids.

Yield Precursor Dislocation Avalanches in Small Crystals: The Irreversibility Transition.

The transition from elastic to plastic deformation in crystalline metals shares history dependence and scale-invariant avalanche signature with other nonequilibrium systems under external loading such as colloidal suspensions. These other systems exhibit transitions with clear analogies to work hardening and yield stress, with many typically undergoing purely elastic behavior only after "training" through repeated cyclic loading; studies in these other systems show a power-law scaling of the hysteresis loop extent and of the training time as the peak load approaches a so-called reversible-to-irreversible transition (RIT). We discover here that deformation of small crystals shares these key characteristics: yielding and hysteresis in uniaxial compression experiments of single-crystalline Cu nano- and micropillars decay under repeated cyclic loading. The amplitude and decay time of the yield precursor avalanches diverge as the peak stress approaches failure stress for each pillar, with a power-law scaling virtually equivalent to RITs in other nonequilibrium systems.

Experimental Evidence of Accelerated Seismic Release without Critical Failure in Acoustic Emissions of Compressed Nanoporous Materials.

The total energy of acoustic emission (AE) events in externally stressed materials diverges when approaching macroscopic failure. Numerical and conceptual models explain this accelerated seismic release (ASR) as the approach to a critical point that coincides with ultimate failure. Here, we report ASR during soft uniaxial compression of three silica-based (SiO_{2}) nanoporous materials. Instead of a singular critical point, the distribution of AE energies is stationary, and variations in the activity rate are sufficient to explain the presence of multiple periods of ASR leading to distinct brittle failure events. We propose that critical failure is suppressed in the AE statistics by mechanisms of transient hardening. Some of the critical exponents estimated from the experiments are compatible with mean field models, while others are still open to interpretation in terms of the solution of frictional and fracture avalanche models.

Single-molecule packaging initiation in real time by a viral DNA packaging machine from bacteriophage T4.

Viral DNA packaging motors are among the most powerful molecular motors known. A variety of structural, biochemical, and single-molecule biophysical approaches have been used to understand their mechanochemistry. However, packaging initiation has been difficult to analyze because of its transient and highly dynamic nature. Here, we developed a single-molecule fluorescence assay that allowed visualization of packaging initiation and reinitiation in real time and quantification of motor assembly and initiation kinetics. We observed that a single bacteriophage T4 packaging machine can package multiple DNA molecules in bursts of activity separated by long pauses, suggesting that it switches between active and quiescent states. Multiple initiation pathways were discovered including, unexpectedly, direct DNA binding to the capsid portal followed by recruitment of motor subunits. Rapid succession of ATP hydrolysis was essential for efficient initiation. These observations have implications for the evolution of icosahedral viruses and regulation of virus assembly.

Avalanche Statistics Identify Intrinsic Stellar Processes near Criticality in KIC 8462852.

The star KIC8462852 (Tabby's star) has shown anomalous drops in light flux. We perform a statistical analysis of the more numerous smaller dimming events by using methods found useful for avalanches in ferromagnetism and plastic flow. Scaling exponents for avalanche statistics and temporal profiles of the flux during the dimming events are close to mean field predictions. Scaling collapses suggest that this star may be near a nonequilibrium critical point. The large events are interpreted as avalanches marked by modified dynamics, limited by the system size, and not within the scaling regime.

Earthquake-like dynamics in Myxococcus xanthus social motility.

Myxococcus xanthus is a bacterium capable of complex social organization. Its characteristic social ("S")-motility mechanism is mediated by type IV pili (TFP), linear actuator appendages that propel the bacterium along a surface. TFP are known to bind to secreted exopolysaccharides (EPS), but it is unclear how M. xanthus manages to use the TFP-EPS technology common to many bacteria to achieve its unique coordinated multicellular movements. We examine M. xanthus S-motility, using high-resolution particle-tracking algorithms, and observe aperiodic stick-slip movements. We show that they are not due to chemotaxis, but are instead consistent with a constant TFP-generated force interacting with EPS, which functions both as a glue and as a lubricant. These movements are quantitatively homologous to the dynamics of earthquakes and other crackling noise systems. These systems exhibit critical behavior, which is characterized by a statistical hierarchy of discrete "avalanche" motions described by a power law distribution. The measured critical exponents from M. xanthus are consistent with mean field theoretical models and with other crackling noise systems, and the measured Lyapunov exponent suggests the existence of highly branched EPS. Such molecular architectures, which are common for efficient lubricants but rare in bacterial EPS, may be necessary for S-motility: We show that the TFP of leading "locomotive" cells initiate the collective motion of follower cells, indicating that lubricating EPS may alleviate the force generation requirements on the lead cell and thus make S-motility possible.

Bulk metallic glasses deform via slip avalanches.

For the first time in metallic glasses, we extract both the exponents and scaling functions that describe the nature, statistics, and dynamics of slip events during slow deformation, according to a simple mean field model. We model the slips as avalanches of rearrangements of atoms in coupled shear transformation zones (STZs). Using high temporal resolution measurements, we find the predicted, different statistics and dynamics for small and large slips thereby excluding self-organized criticality. The agreement between model and data across numerous independent measures provides evidence for slip avalanches of STZs as the elementary mechanism of inhomogeneous deformation in metallic glasses.

DNA looping increases the range of bistability in a stochastic model of the lac genetic switch.

Conditions and parameters affecting the range of bistability of the lac genetic switch in Escherichia coli are examined for a model which includes DNA looping interactions with the lac repressor and a lactose analogue. This stochastic gene-mRNA-protein model of the lac switch describes DNA looping using a third transcriptional state. We exploit the fast bursting dynamics of mRNA by combining a novel geometric burst extension with the finite state projection method. This limits the number of protein/mRNA states, allowing for an accelerated search of the model's parameter space. We evaluate how the addition of the third state changes the bistability properties of the model and find a critical region of parameter space where the phenotypic switching occurs in a range seen in single molecule fluorescence studies. Stochastic simulations show induction in the looping model is preceded by a rare complete dissociation of the loop followed by an immediate burst of mRNA rather than a slower build up of mRNA as in the two-state model. The overall effect of the looped state is to allow for faster switching times while at the same time further differentiating the uninduced and induced phenotypes. Furthermore, the kinetic parameters are consistent with free energies derived from thermodynamic studies suggesting that this minimal model of DNA looping could have a broader range of application.

Recurrent activity in neuronal avalanches.

A new statistical analysis of large neuronal avalanches observed in mouse and rat brain tissues reveals a substantial degree of recurrent activity and cyclic patterns of activation not seen in smaller avalanches. To explain these observations, we adapted a model of structural weakening in materials. In this model, dynamical weakening of neuron firing thresholds closely replicates experimental avalanche size distributions, firing number distributions, and patterns of cyclic activity. This agreement between model and data suggests that a mechanism like dynamical weakening plays a key role in recurrent activity found in large neuronal avalanches. We expect these results to illuminate the causes and dynamics of large avalanches, like those seen in seizures.

Critical nematic correlations throughout the superconducting doping range in Bi2-zPbzSr2-yLayCuO6+x.

Charge modulations have been widely observed in cuprates, suggesting their centrality for understanding the high-Tc superconductivity in these materials. However, the dimensionality of these modulations remains controversial, including whether their wavevector is unidirectional or bidirectional, and also whether they extend seamlessly from the surface of the material into the bulk. Material disorder presents severe challenges to understanding the charge modulations through bulk scattering techniques. We use a local technique, scanning tunneling microscopy, to image the static charge modulations on Bi2-zPbzSr2-yLayCuO6+x. The ratio of the phase correlation length ξCDW to the orientation correlation length ξorient points to unidirectional charge modulations. By computing new critical exponents at free surfaces including that of the pair connectivity correlation function, we show that these locally 1D charge modulations are actually a bulk effect resulting from classical 3D criticality of the random field Ising model throughout the entire superconducting doping range.

Distribution of maximum velocities in avalanches near the depinning transition.

We report exact predictions for universal scaling exponents and scaling functions associated with the distribution of the maximum collective avalanche propagation velocities v(m) in the mean field theory of the interface depinning transition. We derive the extreme value distribution P(v(m)|T) for the maximum velocities in avalanches of fixed duration T and verify the results by numerical simulation near the critical point. We find that the tail of the distribution of maximum velocity for an arbitrary avalanche duration, v(m), scales as P(v(m))~v(m)(-2) for large v(m). These results account for the observed power-law distribution of the maximum amplitudes in acoustic emission experiments of crystal plasticity and are also broadly applicable to other systems in the mean-field interface depinning universality class, ranging from magnets to earthquakes.

Statistics of dislocation slip avalanches in nanosized single crystals show tuned critical behavior predicted by a simple mean field model.

We show that slowly sheared metallic nanocrystals deform via discrete strain bursts (slips), whose size distributions follow power laws with stress-dependent cutoffs. We show for the first time that plasticity reflects tuned criticality, by collapsing the stress-dependent slip-size distributions onto a predicted scaling function. Both power-law exponents and scaling function agree with mean-field theory predictions. Our study of 7 materials and 2 crystal structures, at various deformation rates, stresses, and crystal sizes down to 75 nm, attests to the universal characteristics of plasticity.

Universal critical dynamics in high resolution neuronal avalanche data.

The tasks of neural computation are remarkably diverse. To function optimally, neuronal networks have been hypothesized to operate near a nonequilibrium critical point. However, experimental evidence for critical dynamics has been inconclusive. Here, we show that the dynamics of cultured cortical networks are critical. We analyze neuronal network data collected at the individual neuron level using the framework of nonequilibrium phase transitions. Among the most striking predictions confirmed is that the mean temporal profiles of avalanches of widely varying durations are quantitatively described by a single universal scaling function. We also show that the data have three additional features predicted by critical phenomena: approximate power law distributions of avalanche sizes and durations, samples in subcritical and supercritical phases, and scaling laws between anomalous exponents.

Experimental evidence that shear bands in metallic glasses nucleate like cracks.

Highly time-resolved mechanical measurements, modeling, and simulations show that large shear bands in bulk metallic glasses nucleate in a manner similar to cracks. When small slips reach a nucleation size, the dynamics changes and the shear band rapidly grows to span the entire sample. Smaller nucleation sizes imply lower ductility. Ductility can be increased by increasing the nucleation size relative to the maximum ("cutoff") shear band size at the upper edge of the power law scaling range of their size distribution. This can be achieved in three ways: (1) by increasing the nucleation size beyond this cutoff size of the shear bands, (2) by keeping all shear bands smaller than the nucleation size, or (3) by choosing a sample size smaller than the nucleation size. The discussed methods can also be used to rapidly order metallic glasses according to ductility.

Reverse-chaperoning activity of an AAA+ protein.

Speed and processivity of replicative DNA polymerases can be enhanced via coupling to a sliding clamp. Due to the closed ring shape of the clamp, a clamp loader protein, belonging to the AAA+ class of ATPases, needs to open the ring-shaped clamp before loading it to DNA. Here, we developed real-time fluorescence assays to study the clamp (PCNA) and the clamp loader (RFC) from the mesophilic archaeon Methanosarcina acetivorans. Unexpectedly, we discovered that RFC can assemble a PCNA ring from monomers in solution. A motion-based DNA polymerization assay showed that the PCNA assembled by RFC is functional. This PCNA assembly activity required the ATP-bound conformation of RFC. Our work demonstrates a reverse-chaperoning activity for an AAA+ protein that can act as a template for the assembly of another protein complex.

Dislocations jam at any density.

Crystalline materials deform in an intermittent way via dislocation-slip avalanches. Below a critical stress, the dislocations are jammed within their glide plane due to long-range elastic interactions and the material exhibits plastic response, while above this critical stress the dislocations are mobile (the unjammed phase) and the material flows. We use dislocation dynamics and scaling arguments in two dimensions to show that the critical stress grows with the square root of the dislocation density. Consequently, dislocations jam at any density, in contrast with granular materials, which only jam below a critical density.

Topology of the energy landscape of sheared amorphous solids and the irreversibility transition.

Recent experiments and simulations of amorphous solids plastically deformed by an oscillatory drive have found a surprising behavior-for small strain amplitudes the dynamics can be reversible, which is contrary to the usual notion of plasticity as an irreversible form of deformation. This reversibility allows the system to reach limit cycles in which plastic events repeat indefinitely under the oscillatory drive. It was also found that reaching reversible limit cycles can take a large number of driving cycles and it was surmised that the plastic events encountered during the transient period are not encountered again and are thus irreversible. Using a graph representation of the stable configurations of the system and the plastic events connecting them, we show that the notion of reversibility in these systems is more subtle. We find that reversible plastic events are abundant and that a large portion of the plastic events encountered during the transient period are actually reversible in the sense that they can be part of a reversible deformation path. More specifically, we observe that the transition graph can be decomposed into clusters of configurations that are connected by reversible transitions. These clusters are the strongly connected components of the transition graph and their sizes turn out to be power-law distributed. The largest of these are grouped in regions of reversibility, which in turn are confined by regions of irreversibility whose number proliferates at larger strains. Our results provide an explanation for the irreversibility transition-the divergence of the transient period at a critical forcing amplitude. The long transients result from transition between clusters of reversibility in a search for a cluster large enough to contain a limit cycle of a specific amplitude. For large enough amplitudes, the search time becomes very large, since the sizes of the limit cycles become incompatible with the sizes of the regions of reversibility.

The duration-energy-size enigma for acoustic emission.

Acoustic emission (AE) measurements of avalanches in different systems, such as domain movements in ferroics or the collapse of voids in porous materials, cannot be compared with model predictions without a detailed analysis of the AE process. In particular, most AE experiments scale the avalanche energy E, maximum amplitude Amax and duration D as E ~ Amaxx and Amax ~ Dχ with x = 2 and a poorly defined power law distribution for the duration. In contrast, simple mean field theory (MFT) predicts that x = 3 and χ = 2. The disagreement is due to details of the AE measurements: the initial acoustic strain signal of an avalanche is modified by the propagation of the acoustic wave, which is then measured by the detector. We demonstrate, by simple model simulations, that typical avalanches follow the observed AE results with x = 2 and 'half-moon' shapes for the cross-correlation. Furthermore, the size S of an avalanche does not always scale as the square of the maximum AE avalanche amplitude Amax as predicted by MFT but scales linearly S ~ Amax. We propose that the AE rise time reflects the atomistic avalanche time profile better than the duration of the AE signal.

Plasticity and dislocation dynamics in a phase field crystal model.

The critical dynamics of dislocation avalanches in plastic flow is examined using a phase field crystal model. In the model, dislocations are naturally created, without any ad hoc creation rules, by applying a shearing force to the perfectly periodic ground state. These dislocations diffuse, interact and annihilate with one another, forming avalanche events. By data collapsing the event energy probability density function for different shearing rates, a connection to interface depinning dynamics is confirmed. The relevant critical exponents agree with mean field theory predictions.