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1.
J Exp Med ; 172(5): 1529-32, 1990 Nov 01.
Artículo en Inglés | MEDLINE | ID: mdl-2230656

RESUMEN

A major 18-kD IgE-binding protein from Aspergillus fumigatus (Asp fI) has been purified. Partial amino acid sequencing of Asp f I showed extensive sequence homology (95%) between Asp fI and a cytotoxin (mitogillin) produced by A. restrictus. Crossinhibition radioimmunoassay using murine monoclonal antibody and human IgG and IgE antibodies showed that Asp fI and mitogillin were antigenically indistinguishable. Furthermore, both proteins inhibited protein synthesis in vitro by greater than 90%. Asp fI was expressed in A. fumigatus but not in seven other Aspergillus species. The results suggest that Asp fI could play a dual role in the pathogenesis of A. fumigatus-related diseases by promoting colonization through cytotoxic activity and by causing inflammatory reactions involving IgE antibodies.


Asunto(s)
Alérgenos/análisis , Antígenos Fúngicos/análisis , Aspergillus fumigatus/inmunología , Proteínas Portadoras/análisis , Citotoxinas/análisis , Proteínas Fúngicas , Inmunoglobulina E/metabolismo , Linfocinas/análisis , Proteínas de Secreción Prostática , Ribonucleasas , Alérgenos/aislamiento & purificación , Secuencia de Aminoácidos , Anticuerpos/análisis , Anticuerpos/inmunología , Antígenos de Plantas , Proteínas Portadoras/inmunología , Proteínas Portadoras/metabolismo , Humanos , Inmunoglobulina E/inmunología , Linfocinas/inmunología , Linfocinas/metabolismo , Datos de Secuencia Molecular , Péptidos/análisis , Radioinmunoensayo , Homología de Secuencia de Ácido Nucleico , Piel/química
2.
Int Biomech ; 7(1): 1-8, 2020 12.
Artículo en Inglés | MEDLINE | ID: mdl-33998385

RESUMEN

Lower extremity multi-joint strength curves tend not to evaluate individual joint contributions to endpoint force in maximum effort isometric whole limb extension. Therefore, the purpose of this study was to measure the contribution of the hip, knee, and ankle to vertical ground reaction force in maximum effort isometric whole limb extension at various postures. An effect of posture on the contributions of the hip, knee, and ankle to vertical ground reaction force was found (F(3,96) = 85.31, p < 0.0001; F(3,96) = 21.32, p < 0.0001; F(3,96) = 130.61, p < 0.0001 for the hip, knee, and ankle, respectively). The hip and knee contributed most to vertical endpoint force when the lower limb was in a flexed posture, and their contributions decreased when posture was extended. Conversely, the ankle contributed least when the limb was flexed, but its contribution increased as posture was changed from flexed to more extended. In comparison to recent research involving induced acceleration analysis, it appears that the hip, knee, and ankle utilize the same force allocation strategy in multi-joint maximum effort isometric leg extensions and activities of daily living.


Asunto(s)
Articulación del Tobillo/fisiología , Articulación de la Cadera/fisiología , Articulación de la Rodilla/fisiología , Pierna/fisiología , Postura/fisiología , Rango del Movimiento Articular/fisiología , Actividades Cotidianas , Adulto , Articulación del Tobillo/anatomía & histología , Fenómenos Biomecánicos , Femenino , Articulación de la Cadera/anatomía & histología , Humanos , Articulación de la Rodilla/anatomía & histología , Pierna/anatomía & histología , Masculino , Ejercicios de Estiramiento Muscular/fisiología
3.
Neuron ; 19(2): 239-49, 1997 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-9292716

RESUMEN

Although accurate long-distance neuronal migration is a cardinal feature of cerebral cortical development, little is known about control of this migration. The scrambler (scm) mouse shows abnormal cortical lamination that is indistinguishable from reeler. Genetic and physical mapping of scm identified yeast artificial chromosomes containing an exon of mdab1, a homolog of Drosophila disabled, which encodes a phosphoprotein that binds nonreceptor tyrosine kinases. mdab1 transcripts showed abnormal splicing in scm homozygotes, with 1.5 kb of intracisternal A particle retrotransposon sequence inserted into the mdab1 coding region in antisense orientation, producing a mutated and truncated predicted protein. Therefore, mdab1 is most likely the scm gene, thus implicating nonreceptor tyrosine kinases in neuronal migration and lamination in developing cerebral cortex.


Asunto(s)
Proteínas del Tejido Nervioso/genética , Empalme del ARN , Animales , Secuencia de Bases , Corteza Cerebral/fisiología , Femenino , Immunoblotting , Masculino , Ratones , Ratones Mutantes , Datos de Secuencia Molecular , Reacción en Cadena de la Polimerasa
4.
Neuron ; 21(6): 1315-25, 1998 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-9883725

RESUMEN

Long-range, directed migration is particularly dramatic in the cerebral cortex, where postmitotic neurons generated deep in the brain migrate to form layers with distinct form and function. In the X-linked dominant human disorder periventricular heterotopia (PH), many neurons fail to migrate and persist as nodules lining the ventricular surface. Females with PH present with epilepsy and other signs, including patent ductus arteriosus and coagulopathy, while hemizygous males die embryonically. We have identified the PH gene as filamin 1 (FLN1), which encodes an actin-cross-linking phosphoprotein that transduces ligand-receptor binding into actin reorganization, and which is required for locomotion of many cell types. FLN1 shows previously unrecognized, high-level expression in the developing cortex, is required for neuronal migration to the cortex, and is essential for embryogenesis.


Asunto(s)
Anomalías Múltiples/genética , Encefalopatías/genética , Encéfalo/patología , Corteza Cerebral/fisiopatología , Ventrículos Cerebrales , Coristoma/genética , Proteínas Contráctiles/genética , Proteínas de Microfilamentos/genética , Neuronas/fisiología , Envejecimiento , Animales , Encéfalo/anomalías , Encéfalo/anatomía & histología , Encefalopatías/patología , Encefalopatías/fisiopatología , Corteza Cerebral/anomalías , Corteza Cerebral/patología , Ventrículos Cerebrales/anomalías , Ventrículos Cerebrales/patología , Coristoma/fisiopatología , Mapeo Cromosómico , Desarrollo Embrionario y Fetal , Epilepsia/genética , Femenino , Muerte Fetal , Filaminas , Regulación del Desarrollo de la Expresión Génica , Humanos , Imagen por Resonancia Magnética , Masculino , Ratones , Neuronas/patología , Linaje , Fenotipo , Caracteres Sexuales , Cromosoma X
5.
Biochimie ; 89(11): 1322-31, 2007 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-17555860

RESUMEN

The poisonous bite by Hippasa partita, a funnel web spider from the Indian subcontinent has been demonstrated to give rise to severe dermo- and myonecrosis. In this work a hemorrhagic metalloprotease, Partitagin was purified from H. partita venom by successive chromatography on Sephadex G-100, DEAE Sephadex A-50 and Biosep DEAE columns. SDS-PAGE, reversed phase HPLC on a C(4) column, N-terminal amino acid sequencing and MALDI-TOF mass spectrometry confirmed the homogeneity. Partitagin was assayed using fat free casein as substrate. EDTA, 1,10-phenanthroline and cyanide, inactivated it irreversibly while, EGTA, PMSF, leupeptin, pepstatin and aprotinin did not inhibit. The presence of Zn(+2) was confirmed by atomic absorption spectrometry. Partitagin caused hemorrhage when tested in a mouse model. Light microscopy of skin tissue sections at the site of injection revealed extensive damage of extracellular matrix (ECM) in which the basement membrane surrounding blood vessels and capillaries showing signs of extensive destruction and also loss of vessel wall integrity. Similar intense damage was also noticed in the ECM of muscle tissue sections but with no damage caused to myocytes. Partitagin showed specificity of action on the components of ECM and degraded collagen type-IV and fibronectin but not collagen type-I. Partitagin was devoid of edema, myotoxicity and lethality. This is the first report on the isolation and characterization of a toxin from spider venom in the Indian subcontinent.


Asunto(s)
Metaloendopeptidasas/aislamiento & purificación , Metaloendopeptidasas/farmacología , Venenos de Araña/enzimología , Arañas/enzimología , Animales , Relación Dosis-Respuesta a Droga , Matriz Extracelular/efectos de los fármacos , Matriz Extracelular/metabolismo , Matriz Extracelular/patología , Femenino , Humanos , Metaloendopeptidasas/química , Ratones , Músculo Esquelético/efectos de los fármacos , Músculo Esquelético/patología , Necrosis/inducido químicamente , Piel/efectos de los fármacos , Piel/patología
6.
Mol Cell Biol ; 14(3): 1680-8, 1994 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-7509446

RESUMEN

The phosphorylation of protein tyrosine kinases (PTKs) on tyrosine residues is a critical regulatory event that modulates catalytic activity and triggers the physical association of PTKs with Src homology 2 (SH2)-containing proteins. The integrin-linked focal adhesion kinase, pp125FAK, exhibits extracellular matrix-dependent phosphorylation on tyrosine and physically associates with two nonreceptor PTKs, pp60src and pp59fyn, via their SH2 domains. Herein, we identify Tyr-397 as the major site of tyrosine phosphorylation on pp125FAK both in vivo and in vitro. Tyrosine 397 is located at the juncture of the N-terminal and catalytic domains, a novel site for PTK autophosphorylation. Mutation of Tyr-397 to a nonphosphorylatable residue dramatically impairs the phosphorylation of pp125FAK on tyrosine in vivo and in vitro. The mutation of Tyr-397 to Phe also inhibits the formation of stable complexes with pp60src in cells expressing Src and FAK397F, suggesting that autophosphorylation of pp125FAK may regulate the association of pp125FAK with Src family kinases in vivo. The identification of Tyr-397 as a major site for FAK autophosphorylation provides one of the first examples of a cellular protein containing a high-affinity binding site for a Src family kinase SH2 domain. This finding has implications for models describing the mechanisms of action of pp125FAK, the regulation of the Src family of PTKs, and signal transduction through the integrins.


Asunto(s)
Moléculas de Adhesión Celular/metabolismo , Proteínas Tirosina Quinasas/metabolismo , Proteínas Proto-Oncogénicas pp60(c-src)/genética , Secuencia de Aminoácidos , Línea Celular , Quinasa 1 de Adhesión Focal , Proteína-Tirosina Quinasas de Adhesión Focal , Técnicas In Vitro , Sustancias Macromoleculares , Datos de Secuencia Molecular , Mutagénesis Sitio-Dirigida , Mapeo Peptídico , Péptidos/química , Fosforilación , Fosfotirosina , Transducción de Señal , Relación Estructura-Actividad , Transfección , Tirosina/análogos & derivados , Tirosina/metabolismo
7.
Biochim Biophys Acta ; 911(3): 356-63, 1987 Feb 25.
Artículo en Inglés | MEDLINE | ID: mdl-3101740

RESUMEN

Two hemorrhagic proteinases from Crotalus atrox venom, hemorrhagic toxin c (Ht-c) and hemorrhagic toxin d (Ht-d), were characterized and compared to one another. The two toxins are zinc metalloproteinases which both have molecular weights of 24,000. Their isoelectric points are slightly acidic, Ht-c being the more basic of the two with an isoelectric point of 6.2, whereas Ht-d has an isoelectric point of 6.1. Only minor differences were found in the amino acid compositions of the two toxins. The toxins were both demonstrated to be hemorrhagic, using an in vivo assay, and also proteolytic. Prior treatment of the hemorrhagic proteinases with ethylenediaminetetraacetic acid and o-phenanthroline eliminated both the hemorrhagic and the proteolytic activities. Aprotinin and phenylmethylsulfonyl fluoride had no effect upon these activities. The pH optimum of the proteolysis by Ht-c and Ht-d on hide powder azure as the substrate was between pH 8 and pH 9. The circular dichroism spectra for Ht-c and Ht-d appear almost identical with respect to minima positions and elipticities, indicative of very similar solution structures for the two enzymes. Antiserum raised in mice against Ht-c was assayed on double-diffusion Ouchterlony plates for cross-reactivity with other hemorrhagic toxins from C. atrox venom. From this experiment it was concluded that the two hemorrhagic proteinases Ht-c and Ht-d share identical antigenic structures. This was corroborated by tryptic mapping of the two toxins. Only one major difference was observed from the maps. In the case of Ht-c, it was determined that an aspartate was substituted by an alanine when compared to Ht-d. From these characterization studies we conclude that Ht-c and Ht-d are isoenzymes with only very minor differences in their structures.


Asunto(s)
Venenos de Crotálidos/aislamiento & purificación , Péptido Hidrolasas/aislamiento & purificación , Zinc , Aminoácidos/análisis , Concentración de Iones de Hidrógeno , Inmunodifusión , Punto Isoeléctrico , Peso Molecular , Tripsina/metabolismo
8.
Biochimie ; 87(8): 687-99, 2005 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-16054523

RESUMEN

A novel family of proteins with kininogenase activity and unique primary structure was characterized using combined pharmacological, proteomic and transcriptomic approaches of Thalassophryne nattereri fish venom. The major venom components were isolated and submitted to bioassays corresponding to its main effects: nociception and edema. These activities were mostly located in one fraction (MS3), which was further fractionated. The isolated protein, named natterin, was able to induce edema, nociception and cleave human kininogen and kininogen-derived synthetic peptides, releasing kallidin (Lys-bradykinin). The enzymatic digestion was inhibited by kallikrein inhibitors as Trasylol and TKI. Natterin N-terminal peptide showed no similarity with already known proteins present in databanks. Primary structure of natterin was obtained by a transcriptomic approach using a representative cDNA library constructed from T. nattereri venom glands. Several expressed sequence tags (ESTs) were obtained and processed by bioinformatics revealing a major group (18%) of related sequences unknown to gene or protein sequence databases. This group included sequences showing the N-terminus of isolated natterin and was named Natterin family. Analysis of this family allowed us to identify five related sequences, which we called natterin 1-4 and P. Natterin 1 and 2 sequences include the N-terminus of the isolated natterin. Furthermore, internal peptides of natterin 1-3 were found in major spots of whole venom submitted to mass spectrometry/2DGE. Similarly to the ESTs, the complete sequences of natterins did not show any significant similarity with already described tissue kallikreins, kininogenases or any proteinase, all being entirely new. These data present a new task for the knowledge of the action of kininogenases and may help in understanding the mechanisms of T. nattereri fish envenoming, which is an important medical problem in North and Northeast of Brazil.


Asunto(s)
Batrachoidiformes/metabolismo , Venenos de los Peces/aislamiento & purificación , Calicreínas/aislamiento & purificación , Secuencia de Aminoácidos , Animales , Secuencia de Bases , Cromatografía en Gel , Electroforesis en Gel Bidimensional , Venenos de los Peces/química , Peces Venenosos , Biblioteca de Genes , Calicreínas/química , Datos de Secuencia Molecular , Alineación de Secuencia
9.
Pharmacol Ther ; 62(3): 325-72, 1994.
Artículo en Inglés | MEDLINE | ID: mdl-7972338

RESUMEN

One of the more significant consequences of crotalid envenomation is hemorrhage. Over the past 50 years of investigation, it is clear that the primary factors responsible for hemorrhage are metalloproteinases present in the venom of these snakes. The biochemical basis for their activity is the proteolytic destruction of basement membrane and extracellular matrix surrounding capillaries and small vessels. These proteinase toxins may also interfere with coagulation, thus complementing loss of blood from the vasculature. Structural studies have shown that these proteinases are synthesized as zymogens and are processed at both the amino and carboxy termini to give the mature protein. The variety of hemorrhagic toxins found in snake venoms is due to the presence of structurally related proteins composed of various domains. The type of domains found in each toxin plays an important role in the hemorrhagic potency of the protein. Recently, structural homologs to the venom hemorrhagic metalloproteinases have been identified in several mammalian reproductive systems. The functional significance of the reproductive proteins is not clear, but in light of the presence of similar domains shared with the venom metalloproteinases, their basic biochemical activities may be similar but with very different consequences. This review discusses the history of hemorrhagic toxin research with emphasis on the Crotalus atrox proteinases. The structural similarities observed among the hemorrhagic toxins are outlined, and the structural relationships of the toxins to the mammalian reproductive proteins are described.


Asunto(s)
Venenos de Crotálidos/enzimología , Hemorragia/inducido químicamente , Metaloendopeptidasas/aislamiento & purificación , Metaloendopeptidasas/toxicidad , Secuencia de Aminoácidos , Animales , Antivenenos/uso terapéutico , Secuencia de Bases , Membrana Basal/efectos de los fármacos , Venenos de Crotálidos/toxicidad , ADN Complementario , Humanos , Metaloendopeptidasas/química , Metaloendopeptidasas/clasificación , Datos de Secuencia Molecular , Mordeduras de Serpientes/terapia , Relación Estructura-Actividad , Viperidae
10.
Protein Sci ; 9(7): 1365-73, 2000 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-10933502

RESUMEN

The disulfide bond pattern of catrocollastatin-C was determined by N-terminal sequencing and mass spectrometry. The N-terminal disintegrin-like domain is a compact structure including eight disulfide bonds, seven of them in the same pattern as the disintegrin bitistatin. The protein has two extra cysteine residues (XIII and XVI) that form an additional disulfide bond that is characteristically found in the disintegrin-like domains of cellular metalloproteinases (ADAMs) and PIII snake venom Zn-metalloproteinases (SVMPs). The C-terminal cysteine-rich domain of catrocollastatin-C contains five disulfide bonds between nearest-neighbor cysteines and a long range disulfide bridge between CysV and CysX. These results provide structural evidence for a redefinition of the disintegrin-like and cysteine-rich domain boundaries. An evolutionary pathway for ADAMs, PIII, and PII SVMPs based on disulfide bond engineering is also proposed.


Asunto(s)
Desintegrinas/química , Metaloendopeptidasas/química , Secuencias de Aminoácidos , Secuencia de Aminoácidos , Animales , Venenos de Crotálidos/química , Crotalus , Cisteína , Disulfuros/química , Datos de Secuencia Molecular
11.
Matrix Biol ; 18(5): 433-44, 1999 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-10601731

RESUMEN

To assess whether cells react differently towards a population of several laminin isoforms, as found in vivo, vs. a single isoform, we have compared the biological activity of kidney laminins to that of pure laminin 1. The kidney laminin preparation contained laminin 1 and further isoforms. Both substrates induced adhesion of a large spectrum of cell types, with kidney laminins being the most active. Unfolding of the coil-coiled conformation of the kidney isoforms negatively affected cell adhesion-promoting activity, which indicated that conformation-dependent cell binding is a characteristic feature of many or all laminins. Cellular interactions with kidney laminins were mediated by alpha3beta1 and alpha6beta1 integrins, with the contribution of alpha3beta1 being apparently lower than that of alpha6beta1 integrins. Immunofluorescence staining of vinculin and integrin subunits decorated focal adhesions on kidney laminins which differed in morphology from those formed on laminin 1 alone, in spite of the presence of the latter in the kidney preparation. These observations collectively indicate that tissue specific but often overlapping expression of laminin isoforms might modulate cell behavior by the activation of distinct sets of integrins and by the induction of distinct molecular assemblies within the cell adhesion signaling complexes.


Asunto(s)
Adhesión Celular/fisiología , Laminina/fisiología , Secuencia de Aminoácidos , Animales , Bovinos , Adhesión Celular/efectos de los fármacos , Células Cultivadas , Humanos , Integrina alfa3beta1 , Integrina alfa6beta1 , Integrinas/fisiología , Riñón/fisiología , Laminina/aislamiento & purificación , Laminina/farmacología , Isoformas de Proteínas/aislamiento & purificación , Isoformas de Proteínas/farmacología , Isoformas de Proteínas/fisiología , Transducción de Señal , Distribución Tisular
12.
Biotechniques ; 27(3): 528-36, 1999 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-10489613

RESUMEN

This study surveyed strategies of sequencing primer selection and evaluated primer performance in automated DNA sequencing. We asked participants to relate their preferred primer design strategies to identify primer characteristics that are considered most important in sequencing primer design. The participants preferred primers of 18-24 nucleotides (nt), 39%-58% G + C, a melting temperature (Tm) of 53 degrees-65 degrees C with a 1-2 nt 3' GC clamp, hairpin stems of less than 2-3 bp, homopolymeric runs of less than 4-5 nt, primer dimers of less than 3-4 bp and secondary priming sites of less than 3-4 bp. We provided a 300-bp test sequence and asked participants to submit sequences of 1-3 optimal sequencing primers. Submitted primers ranged from 17-24 nt and largely conformed to the preferred parameters. Submitted primers were distributed across the test sequence, although some sites were disfavored. Surprisingly, approximately 45% of the primers were selected "manually", more than by any software package. Each of 69 submitted and 95 control primers, distributed at 3-bp intervals across the test sequence, were synthesized, purified and tested using a Model 377 PRISM DNA Sequencer with dichlororhodamine dye terminator reagents (dRhodamine dye terminators). Approximately half of the control primers were also tested using rhodamine dye terminator reagents ("old" rhodamine dye terminators). The results indicated that primer physico-chemical characteristics thought to have a strong impact on sequencing performance had surprisingly little effect. Thus, primers with high or low percent G + C or Tm, strong secondary priming scores or long 3' homopolymeric stretches yielded excellent sequences with the dRhodamine dye terminator reagents, although these characteristics had a stronger effect when the old rhodamine reagents were used. The old rhodamine reagents gave sequences with a similar average read length, but the number of errors and ambiguities or "N's" was consistently higher. Moreover, the effects of the primer physico-chemical characteristics were also more evident with the old rhodamine dyes. We conclude that under optimal sequencing conditions with highly pure template and primer, many of the commonly applied primer design parameters are dispensable, particularly when using one of the new generation of sequencing reagents such as the dichlororhodamine dye terminators.


Asunto(s)
Cartilla de ADN/síntesis química , Diseño de Fármacos , Análisis de Secuencia de ADN , Autoanálisis , Fenómenos Químicos , Química Física , Cartilla de ADN/química , Dimerización , Colorantes Fluorescentes , Indicadores y Reactivos , Rodaminas , Programas Informáticos
13.
Virus Res ; 90(1-2): 91-9, 2002 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-12457965

RESUMEN

Auto-processing of the non-structural polypeptide 3ABC of foot and mouth disease virus (FMDV) expressed in Escherichia coli-BL21-DE3 was prevented by mutating either four glutamic acid residues at the 3A/3B1, 3B1/2, 3B2/3 and 3B3/3C junctions (3ABCtet) or a single cysteine residue at position 383 within the 3C domain (3ABCm). Independent expression of 3ABC and 3ABCtet genes induced expression of chaperone DnaK and degradation of ribosomal S1 protein in E. coli. They also induced cleavage of nucleosomal histone H3 when transiently expressed in BHK21 cells. 3ABCtet, 3ABCm, 3AB and 3A proteins concentrated in the perinuclear region suggesting that peptide sequences within the 3A domain specify intracellular targeting of 3ABC in BHK-21 cells. We propose that 3ABC molecules localized in the nuclear periphery are a source of protease 3C activity and are responsible for histone H3 processing during FMDV infections.


Asunto(s)
Cisteína Endopeptidasas/metabolismo , Virus de la Fiebre Aftosa/patogenicidad , Histonas/metabolismo , Péptidos/metabolismo , Proteínas no Estructurales Virales/metabolismo , Proteínas Virales/metabolismo , Proteasas Virales 3C , Animales , Línea Celular , Cricetinae , Cisteína Endopeptidasas/genética , Escherichia coli/enzimología , Escherichia coli/genética , Virus de la Fiebre Aftosa/enzimología , Virus de la Fiebre Aftosa/genética , Proteínas no Estructurales Virales/genética , Proteínas Virales/genética
14.
J Biomol Tech ; 10(4): 187-93, 1999 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-19499025

RESUMEN

The Nucleic Acids Research Group of the Association of Biomolecular Resource Facilities (ABRF) last surveyed DNA synthesis core facilities in April 1995. Because of the introduction of new technologies and dramatic changes in the market, we sought to update survey information and to determine how academic facilities responded to the challenge presented by commercial counterparts. The online survey was opened in January 1999 by notifying members and subscribers to the ABRF electronic discussion group. The survey consisted of five parts: general facility information, oligonucleotide production profile, oligonucleotide charges, synthesis protocols, and trends in DNA synthesis (including individual comments). All submitted data were anonymously coded. Respondents from DNA synthesis facilities were primarily from the academic category and were established between 1984 and 1991. Typically, a facility provides additional services such as DNA sequencing and has upgraded to electronic ordering. There is stability in staffing profiles for these facilities in that the total number of employees is relatively unchanged, the tenure for staff averages 5.9 years, and experience is extensive. On average, academic facilities annually produce approximately 1/16 the number of oligonucleotides produced by the average commercial facilities, but all facilities report an increase in demand. Charges for standard oligonucleotides from academic facilities are relatively higher than from commercial companies; however, the opposite is true for modified phosphoramidites. Subsidized facilities charge less than nonsubsidized facilities. Synthesis protocols and reagents are standard across the categories. Most facilities offer typical modifications such as biotinylation. Despite the competition by large commercial facilities that have reduced costs dramatically, academic facilities remain a stable entity. Academic facilities enhance the quality of service by focusing on nonstandard oligonucleotides and valuable services such as personal consultations, electronic ordering, and diversifying into other services.

15.
Thromb Haemost ; 85(4): 710-5, 2001 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-11341509

RESUMEN

Thrombocytopenia occurs in a number of patients bitten by Bothrops asper, a species responsible for the majority of snakebites in Central America and southern Mexico. In this work we describe the isolation of a new platelet-aggregating protein, named aspercetin, from the venom of B. asper, which induces thrombocytopenia in mice. Isolation was carried out by a combination of ion-exchange chromatography on DEAE-Sepharose and affinity chromatography on Affi-Gel Blue. Aspercetin is a disulfide-linked heterodimer, with a pI of 4.5 and a molecular mass of 29,759 Da, detemined by MALDI-ESI mass spectrometry. N-terminal sequence shows homology with a number of venom proteins which belong to the C-type lectin family. Aspercetin has functional similarities with botrocetin, from B. jararaca venom, since it induces platelet aggregation only in the presence of plasma or purified von Willebrand factor. Aspercetin-mediated platelet aggregation results from the interaction of von Willebrand factor with platelet receptor GPIb. Aspercetin lacks anticoagulant effect and does not agglutinate erythrocytes, in contrast with other representatives of the C-type lectin family isolated from snake venoms. Moreover, aspercetin is not lethal, nor does it induce myonecrosis, hemorrhage and edema. When injected intravenously or intramuscularly in mice it induces a rapid, dose-dependent drop in platelet counts and prolongs the bleeding time, suggesting that it may play a role in the thrombocytopenia that develops in a number of B. asper envenomations. Moreover, mice injected intravenously with aspercetin and then receiving an intradermal injection of B. asper hemorrhagic metalloproteinase BaP1 develop a larger hemorrhagic lesion than mice receiving only BaP1. This suggests that aspercetin, by reducing platelet numbers, may


Asunto(s)
Bothrops/metabolismo , Venenos de Crotálidos/química , Venenos de Crotálidos/aislamiento & purificación , Hemorragia/inducido químicamente , Metaloendopeptidasas/toxicidad , Agregación Plaquetaria/efectos de los fármacos , Trombocitopenia/inducido químicamente , Secuencia de Aminoácidos , Animales , Tiempo de Sangría , Cromatografía de Afinidad , Cromatografía por Intercambio Iónico , Venenos de Crotálidos/administración & dosificación , Venenos de Crotálidos/farmacología , Venenos de Crotálidos/toxicidad , Inyecciones Intradérmicas , Inyecciones Intramusculares , Inyecciones Intravenosas , Metaloendopeptidasas/administración & dosificación , Ratones , Datos de Secuencia Molecular , Peso Molecular , Recuento de Plaquetas , Alineación de Secuencia , Análisis de Secuencia de Proteína , Homología de Secuencia de Aminoácido , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción
16.
Dis Markers ; 17(4): 285-93, 2001.
Artículo en Inglés | MEDLINE | ID: mdl-11790895

RESUMEN

Pseudomonas aeruginosa is a Gram-negative bacterium that is ubiquitous in the environment and can cause a variety of diseases in compromised patients. The genome of P. aeruginosa strain PAO1 has been reported to contain 5570 potential proteins. The value of this genomic database is that new proteins can be recognized to use as diagnostic markers, novel drug targets, and to better understand the physiology of this organism. However, similar to what has been observed in other sequenced bacterial genomes, approximately one third of the potential proteins have no known function. This is somewhat surprising given the long-standing interest in P. aeruginosa as an opportunistic pathogen. Obviously new tools, in addition to sequence similarity analysis, are needed to determine the role of these proteins. Proteomics using two-dimensional gel electrophoresis followed by mass spectrometry to detect and identify P. aeruginosa proteins represents a novel approach to address this gap.


Asunto(s)
Proteínas Bacterianas/metabolismo , Proteoma/metabolismo , Infecciones por Pseudomonas/metabolismo , Pseudomonas aeruginosa/metabolismo , Animales , Humanos , Pseudomonas aeruginosa/genética
17.
Surgery ; 124(5): 848-54, 1998 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-9823398

RESUMEN

BACKGROUND: Epidermal growth factor (EGF) is likely involved during adaptation after small bowel resection (SBR) because some studies have shown enhanced adaptation by EGF administration. Because the major source of endogenous EGF in mice is the submandibular glands, we sought to determine the effect of submandibular gland excision (SAL) and luminal or systemic EGF replacement on adaptation after SBR. METHODS: A 50% proximal SBR or Sham-SBR (bowel transection and reanastomosis) was performed on male C57BL/6 mice after either SAL or gland mobilization only. Additional mice underwent both SBR and SAL and then received daily EGF or saline solution by intraperitoneal or orogastric administration. At 1 week, adaptation was characterized in the ileum as changes in villus height, DNA, and protein content. RESULTS: SAL significantly attenuated the increase in ileal villus height, total protein, and DNA content after SBR. Both systemic and oral EGF reversed these findings equally and significantly augmented all parameters of intestinal adaptation after SAL. CONCLUSIONS: Submandibular EGF is important for the adaptive response to massive SBR. As both luminal and systemic EGF equally reversed the findings following SAL and SBR, the specific site of action for endogenous EGF during adaptation is either the luminal or basolateral surface of the enterocyte.


Asunto(s)
Adaptación Fisiológica/fisiología , Factor de Crecimiento Epidérmico/fisiología , Íleon/cirugía , Glándula Submandibular/cirugía , Adaptación Fisiológica/efectos de los fármacos , Administración Oral , Animales , Factor de Crecimiento Epidérmico/farmacología , Íleon/efectos de los fármacos , Inyecciones Intraperitoneales , Masculino , Ratones , Ratones Endogámicos C57BL , Periodo Posoperatorio
18.
Peptides ; 3(2): 193-8, 1982.
Artículo en Inglés | MEDLINE | ID: mdl-7099984

RESUMEN

Laser Raman spectra of bradykinin in water, deuterium oxide, and the solid phase were recorded. From the spectra it was concluded that bradykinin conformation is comprised of ordered and unordered structure. The ordered structure appears to be some form of reverse turn. Furthermore, it seems that there is an enhancement of the turn structure in the solid phase. A cyclic cystine containing analog of bradykinin was also examined with Raman spectroscopy. The cyclic bradykinin analog gives a Raman spectrum very similar to that of the linear bradykinin and therefore must share similar conformational forms with bradykinin. The restrictive Cys-Cys disulfide in the cyclic bradykinin must serve to maintain a conformation acceptable to bradykinin receptors since the cyclic peptide exhibits biological activity.


Asunto(s)
Bradiquinina/análogos & derivados , Cistina , Conformación Proteica , Espectrometría Raman , Relación Estructura-Actividad
19.
Toxicon ; 38(11): 1613-20, 2000 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-10775761

RESUMEN

The Boomslang, Dispholidus typus, is a mid- to rear-fanged arboreal colubrid widely distributed throughout much of the African continent. Envenoming by this species is rare although deaths have been recorded. Typical symptoms associated with envenoming include diffuse intravascular coagulation (DIC) caused by fibrinogen consumption and consequent incoagulable blood together with haemorrhage into tissues such as muscle and brain; together, these procoagulant and haemorrhagic effects of the venom result in a very poor prognosis in patients who receive a large dose of venom and who are not treated with antivenom. Renal failure may also result from acute tubular necrosis resulting from pigment nephropathy. Little is known about the toxic components present in the venom; however, proteolytic activity has been reported although the proteinases involved have not been identified. In this study we provide LC/MS/MS (liquid chromatography/mass spectrometry/mass spectrometry) data supporting the presence of class P-III/P-IV snake venom metalloproteinases (SVMPs) in Boomslang venom. Using a polyclonal antibody raised against the P-III haemorrhagic toxin (Jararhagin) obtained from the venom of the Brazilian pit viper, Bothrops jararaca, we identified by western blot a 65 kDa protein from Boomslang venom which cross-reacted with the jararhagin antibody. A corresponding band from SDS-PAGE was subjected to tryptic digestion followed by LC/MS/MS sequence analysis of the digestion mixture. A variety of peptide sequences were identified in the digest, one of which was clearly homologous with a highly conserved region of the disintegrin-like domains of P-III/P-IV SVMPs. These data provide the first structural evidence for the presence of SVMPs in Boomslang venom; it is possible that SVMPs may also be present in the venoms of other colubrids, which cause similar symptoms in envenomed humans. In other snake venoms, most notably those of the Viperinae and Crotalinae subfamilies, many of the coagulopathic and haemorrhagic syndromes associated with systemic and local envenoming are attributed to SVMPs. The identification of a P-III/P-IV SVMP sequence in D. typus venom suggests that many of the pathological signs resulting from envenoming by this species may also be due to the presence of SVMPs in the venom. It is hoped that these results may accelerate research into colubrid venoms and may provide new insights into novel and more efficacious treatments for colubrid envenoming.


Asunto(s)
Colubridae , Metaloendopeptidasas/aislamiento & purificación , Venenos de Serpiente/enzimología , Secuencia de Aminoácidos , Animales , Electroforesis en Gel de Poliacrilamida , Espectrometría de Masas , Metaloendopeptidasas/química
20.
Toxicon ; 35(12): 1683-9, 1997 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-9481810

RESUMEN

The pure TdI-1 polypeptide that blocks miniature endplate potentials (MEPPs) and abolishes or reduces endplate potentials (EPPs) below the action potential threshold was identified from the crude fraction of Tityus discrepans venom. The toxin is a potent reversible non-depolarizing muscle relaxant that blocks more than 95% of the EPP at a 2 microM (0.1 mg/ml) concentration. On a molar basis, TdI-1 is as potent as or more potent than many muscle relaxants since, at the concentration used, the toxin suppressed more than 95% of the EPP. Using matrix-assisted laser desorption time of flight (MALD-TOF) ionization mass spectrometry, TdI-1 was found to have an unusally large mol. wt for a scorpion toxin, close to 48,000. The N-terminal sequence of the first 23 residues of TdI-1 was also determined. The fragment differs from the N-terminal sequences of all 140 peptidic scorpion toxins found in the SWISSPROT and PIR databases using the search engine of the felix.EMBL-Heidelberg.de computer (European Molecular Biology Laboratory, Heidelberg, Germany.


Asunto(s)
Fármacos Neuromusculares no Despolarizantes/aislamiento & purificación , Péptidos/aislamiento & purificación , Venenos de Escorpión/aislamiento & purificación , Escorpiones/química , Secuencia de Aminoácidos , Animales , Potenciales Evocados Motores/efectos de los fármacos , Datos de Secuencia Molecular , Unión Neuromuscular/efectos de los fármacos , Fármacos Neuromusculares no Despolarizantes/farmacología , Péptidos/química , Ranidae , Venenos de Escorpión/química , Venenos de Escorpión/farmacología
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