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1.
Angew Chem Int Ed Engl ; 63(11): e202400261, 2024 03 11.
Artículo en Inglés | MEDLINE | ID: mdl-38246884

RESUMEN

The formation of highly organized metal-DNA structures has significant implications in bioinorganic chemistry, molecular biology and material science due to their unique properties and potential applications. In this study, we report on the conversion of single-stranded polydeoxycytidine (dC15 ) into a Pd-DNA supramolecular structure using the [Pd(Aqa)] complex (Aqa=8-amino-4-hydroxyquinoline-2-carboxylic acid) through a self-assembly process. The resulting Pd-DNA assembly closely resembles a natural double helix, with continuous [Pd(Aqa)(C)] (C=cytosine) units serving as palladium-mediated base pairs, forming interbase hydrogen bonds and intrastrand stacking interactions. Notably, the design of the [Pd(Aqa)] complex favours the interaction with cytosine, distinguishing it from our previously reported [Pd(Cheld)] complex (Cheld=chelidamic acid). This finding opens possibilities for creating heteroleptic Pd-DNA hybrids where different complexes specifically bind to nucleobases. We confirmed the Pd-DNA supramolecular structural assembly and selective binding of the complexes using NMR spectroscopy, circular dichroism, mass spectrometry, isothermal titration calorimetry, and DFT calculations.


Asunto(s)
ADN , Paladio , Emparejamiento Base , Paladio/química , ADN/química , Citosina/química
2.
J Acoust Soc Am ; 152(1): 380, 2022 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-35931515

RESUMEN

The aim of this paper is to facilitate the experimental measurement of acoustic metrics in circular bullrings in accordance with the ISO 3382 standards and to enable the comparison of acoustic measurements and simulations for the various types of bullrings. The proposal analyzes those items in the standard that exert a certain influence on acoustic measurement in bullrings. Based on the identification of the sound sources and audience areas characteristic of bullfights, several locations are proposed, and the most suitable source-receiver combinations are recommended for the description of the acoustic field of bullfighting. Practical considerations are also made, such as typologies and axes, to be taken into account when referencing sources and receivers, as are the environmental conditions in a space strongly influenced by direct sunlight. As an illustration of the procedure, an experimental campaign in the bullring of Las Ventas in Madrid is carried out. The analysis shows that the proposed procedure is highly suitable for this type of building and provides detailed acoustic information regarding the seats for all the sound sources that participate in the spectacle.

3.
Angew Chem Int Ed Engl ; 60(18): 10089-10094, 2021 04 26.
Artículo en Inglés | MEDLINE | ID: mdl-33559939

RESUMEN

Atomic-level control over the position and growth of a single and continuous metal chain is an ambitious goal that often requires complex and costly processes. Herein, we demonstrate that 1Pd-DNA molecules, comprising a continuous single chain of PdII ions, can be prepared by a simple self-assembly reaction between the complex [Pd(Cheld)(CH3 CN)] (1Pd_CH3 CN) (Cheld=chelidamic acid) and single-stranded DNA homopolymers (ss-DNA) containing adenine (A) or 7-deazaadenine (X) bases. The single PdII -base pairs [1Pd(N1-A)] and [1Pd(N1-X)] were synthesized and characterized in solution and solid-state (X-ray diffraction) revealing an arrangement similar to that of natural Watson-Crick base pairs. Subsequently, 1Pd-DNA hybrids were prepared, characterized, and their structures studied by small-angle X-ray scattering (SAXS) and ab-initio calculations. The results indicate that the 1Pd-DNA structures resemble that of double-stranded DNA, with one strand being replaced by a supramolecular stack of continuous PdII complexes.

4.
Inorg Chem ; 59(13): 9325-9338, 2020 Jul 06.
Artículo en Inglés | MEDLINE | ID: mdl-32551611

RESUMEN

The formation of copper(II)-mediated base pairs involving pyridine-2,6-dicarboxylate derivatives and canonical nucleosides has proven to be a smart approach to introduce copper(II) ions at specific locations of DNA duplexes. However, the structural characteristics of these metalized base pairs have not yet been revealed, and their effect on DNA structures is difficult to assess. Herein, for the first time, we report on the different structural details of copper-mediated base pairs formed by themselves and in DNA duplexes. The individual base pairs [Cu(mcheld)(N3-Cyt)(H2O)]·3H2O (1Cu_Cyt), [Cu(mcheld)(N7-Ade)(H2O)2]·2H2O (1Cu_Ade), [Cu(mcheld)(N7-Gua)(H2O)] (1Cu_Gua), and [Cu(mcheld)(N1-7CAde)(H2O)]·H2O (1Cu_7CAde) were obtained from the reaction of the metal complex [Cu(mcheld)(H2O)2] (1Cu) (mcheld = 4-methoxypyridine-2,6-dicarboxylic acid) with model nucleosides (Cyt = N1-methylcytosine, Ade = N9-ethyladenine, Gua = N9-propylguanine, 7CAde = N9-propyl-7-deazaadenine). The crystal structure of the five complexes was determined by means of single-crystal X-ray diffraction. Furthermore, the formation of the 1Cu_Cyt and 1Cu_Gua base pairs in the middle of DNA duplexes, duplex DNA15 (917 atoms) and DNA10 (649 atoms), respectively, was studied using highly demanding ab initio computational calculations. These theoretical studies aimed to validate, from a structural point of view, whether base pairs of the kind 1Cu_nucleosides can be included in a DNA double helix and how this situation affects the double-helical structure. The results indicate that the 1Cu_Cyt and 1Cu_Gua base pairs can be formed in a DNA molecule without significant structural constraints. In addition, the double-helix DNA structure remains virtually unchanged when it contains these Cu(II)-mediated base pairs.


Asunto(s)
Emparejamiento Base , Complejos de Coordinación/química , ADN/química , Complejos de Coordinación/síntesis química , Cobre/química , Cristalografía por Rayos X , Modelos Químicos , Estructura Molecular , Nucleósidos/síntesis química , Nucleósidos/química
5.
Chemistry ; 24(18): 4583-4589, 2018 Mar 26.
Artículo en Inglés | MEDLINE | ID: mdl-29226453

RESUMEN

DNA sequences comprising noncanonical 7-deazaguanine (7C G) and canonical cytosine (C) are capable of forming Watson-Crick base pairs via hydrogen bonds as well as silver(I)-mediated base pairs by coordination to central silver(I) ions. Duplexes I and II containing 7C G and C have been synthesized and characterized. The incorporation of silver(I) ions into these duplexes has been studied by means of temperature-dependent UV spectroscopy, circular dichroism, and DFT calculations. The results suggest the formation of DNA molecules comprising contiguous metallated 7C G-AgI -C Watson-Crick base pairs that preserve the original B-type conformation. Furthermore, additional studies performed on duplex III indicated that, in the presence of AgI ions, 7C G-C and 7C A-T Watson-Crick base pairs (7C A, 7-deazadenine; T, thymine) can be converted to metallated 7C G-AgI -C and 7C A-AgI -T base pairs inside the same DNA molecule whilst maintaining its initial double helix conformation. These findings are very important for the development of customized silver-DNA nanostructures based on a Watson-Crick complementarity pattern.


Asunto(s)
Citosina/química , ADN/química , Guanina/análogos & derivados , Plata/química , Emparejamiento Base , Secuencia de Bases , Guanina/química
6.
Arch Virol ; 163(11): 3059-3064, 2018 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-30078131

RESUMEN

Vaccination with the measles, mumps and rubella vaccine decreased the mumps incidence in Cuba, but in 2006 and 2007 an outbreak with more than 1000 laboratory confirmed cases occurred, mainly among high school and university students. The objective of the study was to investigate mumps epidemiology in Cuba between 2004 and 2015 and provide an in-depth laboratory characterization of selected samples from mumps patients. Samples from 116 cases (throat swabs, urines, paired acute and convalescent serum samples) were tested for mumps-specific IgM antibodies by ELISA, in a hemagglutination inhibition assay (HIA) or by RT-PCR. IgM antibodies were found in 80.2% of cases. 48.3% of first sera were positive, 30 of which were collected within two days after symptom onset. Testing of all 116 paired sera by HIA showed seroconversion in 55.2% individuals and an at least fourfold increase in antibodies in 44.8% of cases. In 18 out of the 111 vaccinated people (16.2%) no IgM antibodies were detected, neither in the acute nor the convalescent sera, but 14 of them showed seroconversion by HIA and 4 had an at least fourfold increase of hemagglutinin antibody titers. In the RT-PCR, 23 acute phase sera, 4 throat swabs and 5 urines were positive. Detection of mumps-specific IgM antibodies by ELISA and additional diagnostic methods may be required in settings with high vaccination coverage rates.


Asunto(s)
Virus de la Parotiditis/aislamiento & purificación , Paperas/epidemiología , Adolescente , Adulto , Anticuerpos Antivirales/sangre , Niño , Preescolar , Cuba/epidemiología , Brotes de Enfermedades , Femenino , Humanos , Inmunoglobulina M/sangre , Masculino , Persona de Mediana Edad , Paperas/sangre , Paperas/virología , Virus de la Parotiditis/clasificación , Virus de la Parotiditis/genética , Adulto Joven
7.
Angew Chem Int Ed Engl ; 55(21): 6170-4, 2016 05 17.
Artículo en Inglés | MEDLINE | ID: mdl-27005864

RESUMEN

The oligonucleotide d(TX)9 , which consists of an octadecamer sequence with alternating non-canonical 7-deazaadenine (X) and canonical thymine (T) as the nucleobases, was synthesized and shown to hybridize into double-stranded DNA through the formation of hydrogen-bonded Watson-Crick base pairs. dsDNA with metal-mediated base pairs was then obtained by selectively replacing W-C hydrogen bonds by coordination bonds to central silver(I) ions. The oligonucleotide I adopts a duplex structure in the absence of Ag(+) ions, and its stability is significantly enhanced in the presence of Ag(+) ions while its double-helix structure is retained. Temperature-dependent UV spectroscopy, circular dichroism spectroscopy, and ESI mass spectrometry were used to confirm the selective formation of the silver(I)-mediated base pairs. This strategy could become useful for preparing stable metallo-DNA-based nanostructures.


Asunto(s)
Adenina/análogos & derivados , ADN/química , Plata/química , Timina/química , Adenina/química , Adenina/metabolismo , Emparejamiento Base , Dicroismo Circular , ADN/metabolismo , Enlace de Hidrógeno , Conformación de Ácido Nucleico , Espectrometría de Masa por Ionización de Electrospray , Espectrofotometría Ultravioleta , Temperatura , Timina/metabolismo
8.
J Am Chem Soc ; 136(18): 6649-55, 2014 May 07.
Artículo en Inglés | MEDLINE | ID: mdl-24712548

RESUMEN

Details of the mechanism of formation of supramolecular polymer nanowires by templating on DNA are revealed for the first time using AFM. Overall these data reveal that the smooth, regular, structures produced are rendered by highly dynamic supramolecular transformations occurring over the micrometre scale. In the initial stages of the process a low density of conducting polymer (CP) binds to the DNA as, essentially, spherical particles. Further reaction time produces DNA strands which are more densely packed with particles giving a beads-on-a-string appearance. The particles subsequently undergo dynamic reconfiguration so as to elongate along the template axis and merge to yield the highly regular, smooth morphology of the final nanowire. MD simulations illustrate the early stages of the process showing the binding of globular CP to duplex DNA, while the latter stages can be modeled effectively by a linear thermodynamic description based on the balance between the line energy, which accounts for adhesion of the material to the template, and its surface tension. This model accounts for the phenomena observed in the AFM studies: the relative success of DNA templating of polymers compared to metals; the slow approach to equilibrium; and the observed thinning and 'necking' phenomena as the structures transform from beads-on-a-string to smooth nanowire.


Asunto(s)
ADN/química , Nanocables , Polímeros/química , Termodinámica
9.
Nat Commun ; 15(1): 7763, 2024 Sep 05.
Artículo en Inglés | MEDLINE | ID: mdl-39237564

RESUMEN

The challenge of transforming organized DNA structures into their metallized counterparts persists in the scientific field. In this context, utilizing DNA molecules modified with 7-deazapurine, provides a transformative solution. In this study, we present the solution structure of a DNA duplex that can be transformed into its metallized equivalent while retaining the natural base pairing arrangement through the creation of silver-modified Watson-Crick base pairs. Unlike previously documented X-ray structures, our research demonstrates the feasibility of preserving the intrinsic DNA self-assembly while incorporating AgI into the double helix, illustrating that the binding of silver does not disrupt the canonical base-pairing organization. Moreover, in our case, the uninterrupted AgI chain deviates from forming conventional straight linear chains; instead, it adheres to a helical arrangement dictated by the underlying DNA structure. This research challenges conventional assumptions and opens the door to precisely design structures based on the organization of highly stable Ag-DNA assemblies.


Asunto(s)
Emparejamiento Base , ADN , Conformación de Ácido Nucleico , Plata , Plata/química , ADN/química , Modelos Moleculares , Soluciones
10.
Mol Oncol ; 2024 Sep 11.
Artículo en Inglés | MEDLINE | ID: mdl-39258533

RESUMEN

Immune checkpoint inhibitors (ICIs) targeting the programmed cell death protein 1 (PD-1)/programmed cell death 1 ligand 1 (PD-L1) pathway have transformed urothelial cancer (UC) therapy. The correlation between PD-L1 expression and ICI effectiveness is uncertain, leaving the role of PD-L1 as a predictive marker for ICI efficacy unclear. Among several ways to enhance the efficacy of ICI, trials are exploring combining ICIs with serine/threonine-protein kinase mTOR (mTOR) inhibitors in different tumor types. The potential interaction between mTOR inhibitors and PD-L1 expression in UC has not been well characterized. In our study, we investigated how phosphoinositide 3-kinase (PI3K)/AKT/mTOR pathway inhibitors (TAK-228, everolimus and TAK-117) affect PD-L1 expression and function in preclinical bladder cancer cell models. TAK-228 increased cell surface levels of glycosylated PD-L1 in all but one of the seven cell lines, regardless of baseline levels. TAK-228 promoted the secretion of epidermal growth factor (EGF) and interferon-ß (IFNß), both linked to PD-L1 protein induction. Blocking EGF and IFNß receptors reversed the TAK-228-induced PD-L1 increase. Additionally, TAK-228 enhanced IFN-γ-induced PD-L1 expression and intracellular HLA-I levels in some cells. TAK-228-treated bladder cancer cells exhibited resistance to the cytotoxic effects of peripheral blood mononuclear cells (PBMCs) and cluster of differentiation 8 (CD8)+ T cells. The addition of an anti-PD-L1 antibody diminished this resistance in T24 cells. Increased expression of PD-L1 under TAK-228 exposure was confirmed in patient-derived explants (PDEs) treated ex vivo. These preclinical findings suggest that mTOR inhibition with TAK-228 can increase PD-L1 levels, potentially impacting the specific immune response against UC cells. This highlights the rationale for exploring the combination of mTOR inhibitors with ICIs in patients with advanced UC.

11.
Inorg Chem ; 52(9): 5290-9, 2013 May 06.
Artículo en Inglés | MEDLINE | ID: mdl-23594219

RESUMEN

In this work we have synthetized and characterized by X-ray diffraction five cobalt complexes with 6-thioguanine (6-ThioGH), 6-thioguanosine (6-ThioGuoH), or 2'-deoxy-6-thioguanosine (2'-d-6-ThioGuoH) ligands. In all cases, these ligands coordinate to cobalt via N7 and S6 forming a chelate ring. However, independently of reagents ratio, 6-ThioGH provided monodimensional cobalt(II) coordination polymers, in which the 6-ThioG(-) acts as bridging ligand. However, for 2'-d-6-ThioGuoH and 6-ThioGuoH, the structure directing effect of the sugar residue gives rise to mononuclear cobalt complexes which form extensive H-bond interactions to generate 3D supramolecular networks. Furthermore, with 2'-d-6-ThioGuoH the cobalt ion remains in the divalent state, whereas with 6-ThioGuoH oxidation occurs and Co(III) is found. The electrical and magnetic properties of the coordination polymers isolated have been studied and the results discussed with the aid of DFT calculations, in the context of molecular wires.


Asunto(s)
Cobalto/química , Complejos de Coordinación/química , Tioguanina/química , Conductividad Eléctrica , Modelos Moleculares , Polímeros/química , Difracción de Rayos X
12.
Chemistry ; 18(38): 12008-19, 2012 Sep 17.
Artículo en Inglés | MEDLINE | ID: mdl-22887143

RESUMEN

Supramolecular polymer nanowires have been prepared by using DNA-templating of 2,5-(bis-2-thienyl)-pyrrole (TPT) by oxidation with FeCl(3) in a mixed aqueous/organic solvent system. Despite the reduced capacity for strong hydrogen bonding in polyTPT compared to other systems, such as polypyrrole, the templating proceeds well. FTIR spectroscopic studies confirm that the resulting material is not a simple mixture and that the two types of polymer interact. This is indicated by shifts in bands associated with both the phosphodiester backbone and the nucleobases. XPS studies further confirm the presence of DNA and TPT, as well as dopant Cl(-) ions. Molecular dynamics simulations on a [{dA(24):dT(24)}/{TPT}(4)] model support these findings and indicate a non-coplanar conformation for oligoTPT over much of the trajectory. AFM studies show that the resulting nanowires typically lie in the 7-8 nm diameter range and exhibit a smooth, continuous, morphology. Studies on the electrical properties of the prepared nanowires by using a combination of scanned conductance microscopy, conductive AFM and variable temperature two-terminal I-V measurements show, that in contrast to similar DNA/polymer systems, the conductivity is markedly reduced compared to bulk material. The temperature dependence of the conductivity shows a simple Arrhenius behaviour consistent with the hopping models developed for redox polymers.


Asunto(s)
Cloruros/química , ADN/química , Compuestos Férricos/química , Nanocables/química , Polímeros/química , Pirroles/química , Pirroles/síntesis química , Conductividad Eléctrica , Conformación Molecular , Oxidación-Reducción , Espectroscopía Infrarroja por Transformada de Fourier , Temperatura
13.
Rev Biol Trop ; 60(2): 527-38, 2012 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-23894926

RESUMEN

El Niño Southern Oscillation (ENSO) has generated global coral massive bleaching. The aim of this work was to evaluate the massive bleaching of coral reefs in Puerto Cabello, Venezuela derived from ENSO 2010. We evaluated the bleaching of reefs at five localities both at three and five meter depth. The coral cover and densities of colonies were estimated. We recorded living coral cover, number and diameter of bleached and non-bleached colonies of each coral species. The colonies were classified according to the proportion of bleached area. Satellite images (Modis Scar) were analyzed for chlorophyll-a concentration and temperature in August, September, October and November from 2008-2010. Precipitation, wind speed and air temperature information was evaluated in meteorological data for 2009 and 2010. A total of 58.3% of colonies, belonging to 11 hexacoral species, were affected and the greatest responses were observed in Colpophyllia natans, Montastraea annularis and Montastraeafaveolata. The most affected localities were closer to the mainland and had a bleached proportion up to 62.73+/-36.55%, with the highest proportion of affected colonies, whereas the farthest locality showed 20.25+/-14.00% bleached and the smallest proportion. The salinity in situ varied between 30 and 33ppm and high levels of turbidity were observed. According to the satellite images, in 2010 the surface water temperature reached 31 degree C in August, September and October, and resulted higher than those registered in 2008 and 2009. Regionally, chlorophyll values were higher in 2010 than in 2008 and 2009. The meteorological data indicated that precipitation in November 2010 was three times higher than in November 2009. Massive coral bleaching occurred due to a three month period of high temperatures followed by one month of intense ENSO-associated precipitation. However, this latter factor was likely the trigger because of the bleaching gradient observed.


Asunto(s)
Antozoos , Arrecifes de Coral , El Niño Oscilación del Sur/efectos adversos , Monitoreo del Ambiente/métodos , Trastornos de la Pigmentación/veterinaria , Temperatura , Animales , Trastornos de la Pigmentación/etiología , Comunicaciones por Satélite , Estaciones del Año , Venezuela
14.
Org Biomol Chem ; 9(5): 1555-64, 2011 Mar 07.
Artículo en Inglés | MEDLINE | ID: mdl-21240418

RESUMEN

A series of modified nucleosides based on thymidine have been prepared by Pd-catalysed cross-coupling between N-alkyl-alkynyl functionalised pyrrolyl- (py), 2-(2-thienyl)pyrrolyl- (tp) or 2,5-bis(2-thienyl)pyrrolyl (tpt) groups with 5-iodo-2'-deoxyuridine. The length of the alkyl chain linking the nucleoside and pyrrolyl-containing unit, N(CH(2))(n)C[triple bond, length as m-dash]C-nucleoside (where n = 1-3) was also varied. The compounds have been characterised by (1)H NMR, ES-MS, UV-vis, cyclic voltammetry (CV) and, in some cases, single-crystal X-ray diffraction. Cyclic voltammetry studies demonstrated that all the py-, tp- and tpt-alkynyl derivatives 1-7 can be electrochemically polymerised to form conductive materials. It was found that increasing the N-alkyl chain length in these cases resulted in only minor changes in the oxidation potential. The same behaviour was observed for the tp- and tpt-modified nucleosides 9-12; however, the py-derivative, 8, produced a poorly conducting material. DFT calculations on the one-electron oxidised cation of the modified nucleosides bearing tp or tpt showed that spin density is located on the pyrrolyl and thienyl units in all cases and that the coplanarity of adjacent rings increases upon oxidation. In contrast, in the corresponding pyrrolyl cases the spin density is distributed over the whole molecule, suggesting that polymerisation does not occur solely at the pyrrolyl-Cα position and the conjugation is interrupted.


Asunto(s)
Nucleósidos/síntesis química , Pirroles/química , Timidina/química , Alquilación , Modelos Moleculares , Estructura Molecular , Oxidación-Reducción
15.
Nat Commun ; 11(1): 3304, 2020 07 03.
Artículo en Inglés | MEDLINE | ID: mdl-32620809

RESUMEN

A main assumption of molecular population genetics is that genomic mutation rate does not depend on sequence function. Challenging this assumption, a recent study has found a reduction in the mutation rate in exons compared to introns in somatic cells, ascribed to an enhanced exonic mismatch repair system activity. If this reduction happens also in the germline, it can compromise studies of population genomics, including the detection of selection when using introns as proxies for neutrality. Here we compile and analyze published germline de novo mutation data to test if the exonic mutation rate is also reduced in germ cells. After controlling for sampling bias in datasets with diseased probands and extended nucleotide context dependency, we find no reduction in the mutation rate in exons compared to introns in the germline. Therefore, there is no evidence that enhanced exonic mismatch repair activity determines the mutation rate in germline cells.


Asunto(s)
Exones/genética , Mutación de Línea Germinal , Intrones/genética , Tasa de Mutación , Algoritmos , Reparación de la Incompatibilidad de ADN/genética , Evolución Molecular , Células Germinativas/metabolismo , Humanos , Modelos Genéticos , Mutación , Secuenciación del Exoma/métodos
16.
Chem Commun (Camb) ; (14): 1797-806, 2009 Apr 14.
Artículo en Inglés | MEDLINE | ID: mdl-19319411

RESUMEN

The controlled preparation and assembly of opto-electronic nanoscale materials is being tackled by top-down and bottom-up approaches. The latter draws inspiration from biology, where complex hierarchical systems are assembled from simpler building blocks. One of these, DNA, is proving especially useful: its size, stability, topology; the assorted chemical functional groups; plus its capacity for self-assembly provide a powerful nanoscale toolbox for materials preparation. Here we review recent research that shows the roles DNA can play in the preparation and organisation of semiconductor nanomaterials. Studies show that both hard inorganic and soft polymer materials can be directed to grow at nanoscale lengths using DNA and its constituents. In some cases the resulting materials have been used as components in simple electrical devices and the methodology has been extended to analytical tools. Intriguingly, these DNA-semiconductor hybrid materials have been found to self-assemble themselves, forming highly regular rope-like assemblies and conducting network structures.


Asunto(s)
ADN/química , Nanoestructuras/química , Semiconductores , Polímeros/química
17.
Chem Commun (Camb) ; (20): 2833-5, 2009 May 28.
Artículo en Inglés | MEDLINE | ID: mdl-19436881

RESUMEN

The tetrahedral bis(adeninyl)-Cu(I) complex, , self-associates in polar solvent through complementary hydrogen-bonding interactions and appears to mimic the natural assembly of duplex DNA.


Asunto(s)
Adenina/química , Cationes/química , Cobre/química , Adenina/síntesis química , Biomimética , Cationes/síntesis química , ADN/química , Dimerización , Dimetilsulfóxido/química , Enlace de Hidrógeno , Modelos Moleculares , Estructura Molecular , Conformación de Ácido Nucleico
18.
Inorg Chem ; 48(21): 10295-303, 2009 Nov 02.
Artículo en Inglés | MEDLINE | ID: mdl-19799454

RESUMEN

The effect of the 2-amino group on metal ion binding at the N3-position of a purine base has been investigated using chelate-tethered derivatives. Reactions of diamine-tethered 2,6-diaminopurine (DAP) with divalent d-block metal ions Cu(II) and Cd(II) confirm that binding can occur, but this is much less prevalent than with adenine. In this regard DAP is similar to guanine where we have previously observed a general lack of N3-binding by divalent metal ions compared to adenine (e.g., Houlton et al., Angew. Chem., Int. Ed. 2000, 39, 2360; Chem.-Eur. J. 2000, 6, 4371). For the univalent d-block metals ions, Cu(I) and Ag(I), binding to adenine N3 is not observed in the solid state, as shown by reactions with dithioether-tethered adenine derivatives. Instead, depending on stoichiometry of the reaction, discrete (with metal/ligand ratio 1:2) or polymeric (with metal/ligand ratio 1:1) complexes were isolated and characterized by single crystal X-ray methods. In the former the nucleobases are pendant and involved in base-pair interactions, with both Watson-Crick...Watson-Crick and Hoogsteen...Hoogsteen type pairings present. For the coordination polymers a rather unexpected influence of the tether length on the site of nucleobase binding is found for bridging ligand binding modes involving the chelating diamine and the adeninyl group. Polymer chains derived with the shorter ethyl tether show binding at the N7 site of adeninyl, while binding at N1 is found in the longer propyl chain length.


Asunto(s)
Cadmio/química , Cobre/química , ADN/química , Modelos Biológicos , Purinas/química , Sitios de Unión , Cristalografía por Rayos X , Ligandos , Estructura Molecular , Plata/química , Espectrometría de Masa por Ionización de Electrospray
19.
Inorg Chem ; 48(23): 11085-91, 2009 Dec 07.
Artículo en Inglés | MEDLINE | ID: mdl-19856895

RESUMEN

Alkyldiamine-tethered derivatives of 2,6-diaminopurine, ethylenediamine-N9-propyl-2,6-diaminopurine, L1, and ethylenediamine-N9-ethyl-2,6-diaminopurine, L2, react with Pd(II) to give N3-coordinated complexes. However, the exact nature of the resulting complex is dependent on the reaction conditions. With PdCl(2)(MeCN)(2) in MeCN/H(2)O the expected [PdCl(N3-2,6-DAP-alkyl-en)](+) complex, 1, is formed with L1 chelating the metal center in a tridentate manner through the diamine function and N3 of the purine base. However, under the same conditions the shorter, ethyl-tethered, L2 gives a complex dication, 2, containing a tetradentate ligand forming simultaneously 5-, 6-, and 7-membered chelate rings. This resulting acetamidine, derived by addition to coordinated MeCN, appears to be the first such case involving the 2-amino group of a purine. The ethyl-analogue of 1, [PdCl(N3-2,6-DAP-Et-en)](+) 3, was prepared by reaction of L2 with K(2)PdCl(4) in aqueous media.


Asunto(s)
2-Aminopurina/análogos & derivados , Quelantes/química , Compuestos Organometálicos/química , Paladio/química , 2-Aminopurina/química , Cristalografía por Rayos X , Ligandos , Modelos Moleculares
20.
Inorg Chem ; 48(15): 7413-20, 2009 Aug 03.
Artículo en Inglés | MEDLINE | ID: mdl-19586019

RESUMEN

The reaction of [(cymene)RuCl(2)](2) with K(2)Hoxonate (H(3)oxonic = 4,6-dihydroxy-2-carboxy-1,3,5-triazine acid) in methanol leads to the formation of the dinuclear half-sandwich ruthenium(II) complex [(cymene)(2)Ru(2)(mu-Hoxonato)Cl(2)] (1a). Removal of the chloride ligands of 1a by treatment with AgCF(3)SO(3) yields [(cymene)(2)Ru(2)(mu-Hoxonato)(CF(3)SO(3))(2)] (1b), which, upon posterior reaction with N,N'-linkers (L = 4,4'-bipyridine (4,4'-bpy), 4,7-phenantroline (4,7-phen)), gives rise to the formation of the tetranuclear open boxes [(cymene)(4)Ru(4)(mu-Hoxonato)(2)(mu-N,N'-L)(2)](CF(3)SO(3))(4) (2a, L = 4,4'-bpy; 2b, L = 4,7-phen). These systems have been characterized by (1)H NMR, UV-vis, and ESI-MS. The single-crystal structures of the dinuclear precursor 1a and of the clathrate 2b 4,7-phen have been determined. The interaction of these systems with cysteine, mononucleotides, and calf-thymus DNA has been studied by means of (1)H NMR, UV-vis, circular dicroism, competitive binding assays, and atomic force microscopy imaging. The results show that the robust tetracationic ruthenium(II) cyclic systems 2a and 2b do not give ligand exchange reactions toward biorelevant ligands. Nevertheless, these systems are able to noncovalently bind to DNA, probably at the surface of the major groove, inducing significant conformational changes in this biomolecule. It is also interesting to note that compounds 2a and 2b, in spite of only giving supramolecular interactions with biomolecules, exhibit antitumor activity, particularly toward the human ovarian cancer cell line A2780cisR, showing acquired resistance to cisplatin, with respective 4.6 and 8.3 microM IC(50) values.


Asunto(s)
ADN/química , Compuestos de Rutenio/química , Compuestos de Rutenio/farmacología , Animales , Bovinos , Línea Celular Tumoral , Supervivencia Celular/efectos de los fármacos , Cristalografía por Rayos X , ADN/ultraestructura , Humanos , Microscopía de Fuerza Atómica , Modelos Moleculares , Estructura Molecular , Compuestos de Rutenio/síntesis química
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