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1.
Int Microbiol ; 27(1): 101-111, 2024 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-37202587

RESUMEN

Brucella abortus and Brucella melitensis are the primary etiological agents of brucellosis in large and small ruminants, respectively. There are limited comparative genomic studies involving Brucella strains that explore the relatedness among both species. In this study, we involved strains (n=44) representing standard, vaccine and Indian field origin for pangenome, single nucleotide polymorphism (SNP) and phylogenetic analysis. Both species shared a common gene pool representing 2884 genes out of a total 3244 genes. SNP-based phylogenetic analysis indicated higher SNP diversity among B. melitensis (3824) strains in comparison to B. abortus (540) strains, and a clear demarcation was identified between standard/vaccine and field strains. The analysis for virulence genes revealed that virB3, virB7, ricA, virB5, ipx5, wbkC, wbkB, and acpXL genes were highly conserved in most of the Brucella strains. Interestingly, virB10 gene was found to have high variability among the B. abortus strains. The cgMLST analysis revealed distinct sequence types for the standard/vaccine and field strains. B. abortus strains from north-eastern India fall within similar sequence type differing from other strains. In conclusion, the analysis revealed a highly shared core genome among two Brucella species. SNP analysis revealed B. melitensis strains exhibit high diversity as compared to B. abortus strains. Strains with absence or high polymorphism of virulence genes can be exploited for the development of novel vaccine candidates effective against both B. abortus and B. melitensis.


Asunto(s)
Brucella melitensis , Vacunas , Brucella melitensis/genética , Brucella abortus/genética , Factores de Virulencia/genética , Polimorfismo de Nucleótido Simple , Filogenia , Genómica
2.
J Med Internet Res ; 25: e41005, 2023 04 26.
Artículo en Inglés | MEDLINE | ID: mdl-37099376

RESUMEN

BACKGROUND: Globally, most individuals who are susceptible to depression do not receive adequate or timely treatment. Unguided computerized cognitive behavioral therapy (cCBT) has the potential to bridge this treatment gap. However, the real-world effectiveness of unguided cCBT interventions, particularly in low- and middle-income countries (LMICs), remains inconclusive. OBJECTIVE: In this study, we aimed to report the design and development of a new unguided cCBT-based multicomponent intervention, TreadWill, and its pragmatic evaluation. TreadWill was designed to be fully automated, engaging, easy to use, and accessible to LMICs. METHODS: To evaluate the effectiveness of TreadWill and the engagement level, we performed a double-blind, fully remote, and randomized controlled trial with 598 participants in India and analyzed the data using a completer's analysis. RESULTS: The users who completed at least half of the modules in TreadWill showed significant reduction in depression-related (P=.04) and anxiety-related (P=.02) symptoms compared with the waitlist control. Compared with a plain-text version with the same therapeutic content, the full-featured version of TreadWill showed significantly higher engagement (P=.01). CONCLUSIONS: Our study provides a new resource and evidence for the use of unguided cCBT as a scalable intervention in LMICs. TRIAL REGISTRATION: ClinicalTrials.gov NCT03445598; https://clinicaltrials.gov/ct2/show/NCT03445598.


Asunto(s)
Terapia Cognitivo-Conductual , Terapia Asistida por Computador , Humanos , Trastornos de Ansiedad/terapia , Ansiedad/terapia , Listas de Espera
3.
Artículo en Inglés | MEDLINE | ID: mdl-34427159

RESUMEN

Water reuse programs are being explored to close the gap between supply and demand for irrigation in agriculture. However, these sources could contain hazardous microbial contaminants, and pose risks to public health. This study aimed to grow and irrigate romaine lettuce with inoculated wastewater effluent to track AP205 bacteriophage prevalence through cultivation and post-harvest storage. AP205 is a bacteriophage and was used as a surrogate for enteric viruses. Low and high dosages (mean ± standard deviation) of AP205 at 4.8 ± 0.4 log PFU/mL and 6.6 ± 0.2 log PFU/mL; respectively, were prepared to examine viral load influence on contamination levels. Foliage, leachate, and soil contamination levels were directly related to AP205 concentrations in the effluent. AP205 concentrations increased throughout cultivation for foliage and leachate, suggesting bacteriophage accumulation. During post-harvest storage (14 day at 4 °C), there was a significant decrease in AP205 concentration on the foliage. Results show that wastewater effluents usage for leafy greens cultivation can pose risks to humans and additional steps are required to safely apply wastewater effluents to soils and crops.


Asunto(s)
Bacteriófagos , Enterovirus , Contaminación de Alimentos/análisis , Humanos , Lactuca , Aguas Residuales
4.
Trop Anim Health Prod ; 52(1): 445-452, 2020 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-31313018

RESUMEN

Rotavirus A (RVA) infections are known to retard the piglets' growth and minimize the profit to the pig farming community. Between August 2014 and July 2017, in a cross-sectional study, we surveyed 13 organized pig farms located in the eight states of India representing northern, north-eastern and southern regions, to identify the risk factors associated with RVA infection in pre- and post-weaning piglets. Faecal samples (n = 411) comprising of non-diarrhoeic (n = 320) and diarrhoeic (n = 91) were collected and screened for RVA infection using VP6 gene-based RT-PCR. RVA positivity of 52.5% (168/320) in non-diarrhoeic and 59.3% (54/91) in diarrhoeic piglets was noticed. Further, 53.3% (120/225) and 54.8% (102/186) of the samples from pre- and post-weaned samples were positive for RVA, respectively. To note, no statistically significant association was noticed between RVA infection, health and weaning status. Additionally, a questionnaire-based survey was conducted to identify the risk factors for RVA infections in piglets. The analysis revealed that good ventilation (OR 0.2, 95% CI 0.15-0.39), use of deep well water (OR 0.2, 95% CI 0.13-0.43) and feeding of commercial feed (OR 0.3, 95% CI 0.18-0.41) were associated with reduced risk of RVA infection compared with poor ventilation, use of shallow well water and feeding of own milled feed, respectively. Contrarily, mixed farms (OR 2.1, 95% CI 1.26-3.37), use of heater or cooler (OR 5.9, 95% CI 3.74-9.30), sheds in different elevation (OR 2.5, 95% CI 1.20-5.01) and weekly and occasional use of disinfectant for surface cleaning (OR 1.8, 95% CI 1.12-2.96) were associated with higher RVA infection. Mitigating the risk factors might help in better health management of piglets and increase the economic return to pig farming community in the country.


Asunto(s)
Infecciones por Rotavirus/veterinaria , Rotavirus/fisiología , Enfermedades de los Porcinos/epidemiología , Animales , Estudios Transversales , Diarrea/epidemiología , Diarrea/veterinaria , Diarrea/virología , Heces/virología , India/epidemiología , Prevalencia , Factores de Riesgo , Infecciones por Rotavirus/epidemiología , Infecciones por Rotavirus/virología , Porcinos , Enfermedades de los Porcinos/virología
5.
Epidemiol Infect ; 147: e174, 2019 01.
Artículo en Inglés | MEDLINE | ID: mdl-31063100

RESUMEN

A cross-sectional study was conducted from 2014 to 2017 in 13 organised pig farms located in eight states of India (Northern, North-Eastern and Southern regions) to identify the risk factors, pathotype and antimicrobial resistance of Escherichia coli associated with pre- and post-weaning piglet diarrhoea. The data collected through questionnaire survey were used to identify the risk factors by univariable analysis, in which weaning status, season, altitude, ventilation in the shed, use of heater/cooler for temperature control in the sheds, feed type, water source, and use of disinfectant, were the potential risk factors. In logistic regression model, weaning and source of water were the significant risk factors. The piglet diarrhoea prevalence was almost similar across the regions. Of the 909 faecal samples collected (North - 310, North-East - 194 and South - 405) for isolation of E. coli, pathotyping and antibiotic screening, 531 E. coli were isolated in MacConkey agar added with cefotaxime, where 345 isolates were extended spectrum ß-lactamase (ESBL) producers and were positive for blaCTX-M-1 (n = 147), bla TEM (n = 151), qnrA (n = 98), qnrB (n = 116), qnrS (n = 53), tetA (n = 46), tetB (n = 48) and sul1 (n = 54) genes. Multiple antibiotic resistance (MAR) index revealed that 14 (2.64%) isolates had MAR index of 1. On the virulence screening of E. coli, 174 isolates harboured alone or combination of Stx1, Stx2, eaeA, hlyA genes. The isolates from diarrhoeic and post-weaning samples harboured higher number of virulence genes than non-diarrhoeic and pre-weaning. Alleviating the risk factors might reduce the piglet diarrhoea cases. The presence of multidrug-resistant and ESBL-producing pathogenic E. coli in piglets appears a public health concern.


Asunto(s)
Diarrea/veterinaria , Farmacorresistencia Bacteriana , Infecciones por Escherichia coli/veterinaria , Escherichia coli/genética , Enfermedades de los Porcinos/epidemiología , Animales , Antibacterianos/farmacología , Estudios Transversales , Diarrea/epidemiología , Diarrea/microbiología , Infecciones por Escherichia coli/epidemiología , Infecciones por Escherichia coli/microbiología , India/epidemiología , Factores de Riesgo , Porcinos , Enfermedades de los Porcinos/microbiología
6.
J Med Syst ; 42(10): 195, 2018 Sep 12.
Artículo en Inglés | MEDLINE | ID: mdl-30209620

RESUMEN

Diabetic Retinopathy (DR) has been a leading cause of blindness in case of human beings falling between the ages of 20 and 74 years. This will have a major influence on both the patient and the society as it can normally influence the humans in their gainful years. An early DR detection is quite challenging as it may not be detected by humans. There are several techniques and algorithms that have been established for detecting the DR. These techniques have been facing problems to achieve effective sensitivity, accuracy, and specificity. In order to overcome all these problems, the work has proposed one more such effective algorithm for image processing in order to increase the efficiency and also identify easily the DR diseases. A major challenge in the task is the automatic detection of the microaneurysms. In this work, the Support Vector Machine (SVM) parameters optimized with Glowworm Swarm Optimization (GSO) and Genetic Algorithm (GA) is used to classify the DR. Because the SVM parameter C and γ to control the performance of the classifier. For this work, the SVMs get fused with the hybrid GSO-GA along with the feature chromosomes that are generated that will thereby direct the GA search to a straight line of the error of optimal generalization in their super parameter space. This GSO algorithm will not have memory and the glow worms will not retain any information in memory. The results of the experiment prove that this method had achieved a better performance.


Asunto(s)
Retinopatía Diabética/diagnóstico , Máquina de Vectores de Soporte , Adulto , Anciano , Algoritmos , Retinopatía Diabética/clasificación , Fondo de Ojo , Humanos , Procesamiento de Imagen Asistido por Computador , Persona de Mediana Edad , Adulto Joven
7.
Ecotoxicol Environ Saf ; 121: 63-6, 2015 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-26025643

RESUMEN

Present energy strategies focus on environmental issues, especially environmental pollution prevention and control by eco-friendly green technologies. This includes, increase in the energy supplies, encouraging cleaner and more efficient energy management, addressing air pollution, greenhouse effect, global warming, and climate change. Biofuels provide the panorama of new fiscal opportunities for people in rural area for meeting their need and also the demand of the local market. Biofuels concern protection of the environment and job creation. Renewable energy sources are self-reliance resources, have the potential in energy management with less emissions of air pollutants. Biofuels are expected to reduce dependability on imported crude oil with connected economic susceptibility, reduce greenhouse gases, other pollutants and invigorate the economy by increasing demand and prices for agricultural products. The use of neat paradise tree oil and induction of eco-friendly material Hydrogen through inlet manifold in a constant pressure heat addition cycle engine (diesel engine) with optimized engine operating parameters such as injection timing, injection pressure and compression ratio. The results shows the heat utilization efficiency for neat vegetable oil is 29% and neat oil with 15% Hydrogen as 33%. The exhaust gas temperature (EGT) for 15% of H2 share as 450°C at full load and the heat release of 80J/deg. crank angle for 15% Hydrogen energy share.


Asunto(s)
Biocombustibles/análisis , Calor , Emisiones de Vehículos/análisis , Contaminantes Atmosféricos/análisis , Contaminación del Aire , Cambio Climático , Efecto Invernadero , Hidrógeno , Petróleo , Aceites de Plantas , Semillas/química , Simarouba/química
8.
J Water Health ; 12(3): 404-9, 2014 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-25252343

RESUMEN

The ubiquitous use of antibiotics has led to an increasing number of antibiotic-resistant bacterial strains, including strains that are multidrug-resistant, pathogenic, or both. There is also evidence to suggest that antibiotic resistance genes (ARGs) spread to the environment, humans, and animals through wastewater effluents. The overall objective of this study was to investigate the effect of ultraviolet (UV) light disinfection on antibiotic-resistant bacteria. Wastewater effluent samples from a wastewater treatment plant (WWTP) in Texas were evaluated for differences in tetracycline-resistant bacteria before and after UV treatment. The effects of photoreactivation or dark repair on the reactivation of bacteria present in WWTP effluent after UV disinfection were also examined. Culture-based methods were used to characterize viable heterotrophic, tetracycline-resistant heterotrophic, Escherichia coli, and tetracycline-resistant E. coli bacteria present before and after UV treatment. UV disinfection was found to be as effective at reducing concentrations of resistant heterotrophs and E. coli, as it was at reducing total bacterial concentrations. The lowest survival ratio following UV disinfection was observed in tetracycline-resistant E. coli showing particular susceptibility to UV treatment. Photoreactivation and dark repair rates were found to be comparable to each other for all bacterial populations.


Asunto(s)
Bacterias/efectos de la radiación , Desinfección/métodos , Resistencia a la Tetraciclina , Rayos Ultravioleta , Aguas Residuales/microbiología , Recuento de Colonia Microbiana , Escherichia coli/efectos de la radiación , Texas
9.
Neural Netw ; 170: 506-520, 2024 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-38043371

RESUMEN

The objective of this study is to investigate the synchronization criteria under the sampled-data control method for multi-agent systems (MASs) with state quantization and time-varying delay. Currently, a looped Lyapunov-Krasovskii Functional (LKF) has been developed, which integrates information from the sampling interval to ensure that the leader system synchronizes with the follower system, resulting in a specific condition in the form of Linear Matrix Inequalities (LMIs). The LMIs can be easily solved using the LMI Control toolbox in Matlab. Finally, the proposed approach's feasibility and effectiveness are demonstrated through numerical simulations and comparative results.


Asunto(s)
Redes Neurales de la Computación , Factores de Tiempo
10.
J Appl Microbiol ; 115(3): 774-85, 2013 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-23773226

RESUMEN

AIMS: The objective of this study was to determine whether varying levels of urbanization influence the dominant bacterial species of mildly resistant (0·03 mmol l(-1) tetracycline) and highly resistant (0·06 mmol l(-1) tetracycline) bacteria in sediment and water. Also, the level of urbanization was further evaluated to determine whether the diversity of tetracycline resistance genes present in the isolates and the capability of transferring their resistance were influenced. METHODS AND RESULTS: Sediment and water samples collected from five sampling sites were plated in triplicate on nutrient agar plates with a mild dose (0·03 mmol l(-1) ) and a high dose (0·06 mmol l(-1) ) of tetracycline. Five colonies from each plate plus an additional five from each triplicate group were randomly selected and isolated on nutrient agar containing 0·03 mmol l(-1) tetracycline (400 isolates). The isolates were identified by 16S rRNA gene sequencing and comparison to GenBank using blast. The isolates were also screened for 15 tetracycline resistance genes using a multiplex PCR assay and their ability to transfer resistance through conjugation experiments using a kanamycin-resistant Escherichia. coli K-12 strain labelled with a green fluorescent protein gene. Results from this study indicate that the dominant resistant organisms in this watershed are Acinetobacter spp., Chryseobacterium spp., Serratia spp., Pseudomonas spp., Aeromonas spp. and E. coli. All of these organisms are Gram negative and are closely related to pathogenic species. A majority of the isolates (66%) were capable of transferring their resistance, and there was a greater incidence of tet resistance transfer with increasing urbanization. Also, it was determined that the dominant resistance genes in the watershed are tet(W) and tet(A). CONCLUSION: Urbanization significantly affected dominant tetracycline-resistant bacteria species, but did not affect dominant resistance genes. There was correlation between increased urbanization with an increase in the ability to transfer tetracycline resistance. This indicates that urban areas may select for bacterial species that are capable of transferring resistance. SIGNIFICANCE AND IMPACT OF STUDY: These results indicate that urbanization influences the occurrence of tetracycline-resistant bacteria and the potential for transfer of resistance genes.


Asunto(s)
Bacterias/aislamiento & purificación , Genes Bacterianos , Resistencia a la Tetraciclina/genética , Acinetobacter/efectos de los fármacos , Acinetobacter/genética , Aeromonas/efectos de los fármacos , Aeromonas/genética , Bacterias/efectos de los fármacos , Bacterias/genética , Clima , Escherichia coli/efectos de los fármacos , Escherichia coli/genética , Sedimentos Geológicos/microbiología , Pseudomonas/efectos de los fármacos , Pseudomonas/genética , Urbanización , Microbiología del Agua
11.
Sci Total Environ ; 898: 165256, 2023 Nov 10.
Artículo en Inglés | MEDLINE | ID: mdl-37423281

RESUMEN

Increased heat stress during cropping season poses significant challenges to rice production, yet the complex stoichiometry between rice grain yield, quality and high daytime, nighttime temperature remains with gaps in current knowledge. We conducted a meta-analysis using a combined dataset of 1105 experiments for daytime temperature and 841 experiments for nighttime temperature from published literature to investigate the effects of high daytime temperature (HDT) and high nighttime temperatures (HNT) on rice yield and its various components (such as panicle number, spikelet number per panicle, seed set rate, grain weight) and grain quality traits (such as milling yield, chalkiness, amylose and protein contents). We established relationships between rice yield, its components, grain quality and the HDT/HNT, and studied phenotypic plasticity of the traits in response to HDT and HNT. Results showed that HNT had a more detrimental impact on rice yield and quality when compared with the HDT. The optimum daytime and nighttime temperatures for best rice yield were approximately 28 °C and 22 °C, respectively. Grain yield showed a decline by 7% and 6% for each 1 °C increase in HNT and HDT, respectively, when exceeded the optimum temperatures. Seed set rate (i.e., percent fertility) was the most sensitive trait to HDT and HNT and accounted for most of the yield losses. Both the HDT and HNT affected grain quality by increasing chalkiness and decreasing head rice percentage, which may affect marketability of the rice produced. Additionally, HNT was found to significantly impact nutritional quality (e.g., protein content) of rice grains. Our findings fill current knowledge gaps on estimations of rice yield losses and possible economic consequences under high temperatures and suggest that impacts on rice quality should also be considered for selection and breeding of high-temperature tolerant rice varieties in response to HDT and HNT.


Asunto(s)
Oryza , Temperatura , Oryza/metabolismo , Biomasa , Fitomejoramiento , Semillas/fisiología , Grano Comestible
12.
J Contemp Dent Pract ; 13(3): 266-74, 2012 May 01.
Artículo en Inglés | MEDLINE | ID: mdl-22917994

RESUMEN

AIM: This study was undertaken to investigate and analyze the significance of dermatoglyphics in predicting the susceptibility of individuals to develop dental caries. MATERIALS AND METHODS: This case-control study was conducted on 1250 children in the age group of 5 to 12 years from Chennai Corporation School, Vadapalani, Chennai. Out of 1250 subjects, 625 subjects were in the study group and the remaining 625 subjects were the control group. The study group included children with dental caries in 5 or more teeth based on the DMFT index performed and control group consisted of normal, healthy children without any dental caries. The finger and palmar prints of both hands were taken using a stamp pad. The fingertip patterns were analyzed according to the classical method and configurational types were classified according to the topological method. Statistical analysis was performed using nonparametric tests and t-test to compare the dermatoglyphic pattern changes between the study group and the control group and was applied for each variable, to compare the proportions, and p-value. RESULTS: (1) Dental caries susceptibility of an individual increases with an increase in the incidence of whorl pattern (83% correlation). (2) All the variables show statistically significant value, with a degree of divergence of specific dermatoglyphic patterns among study and control group. (3) The dermatoglyphic patterns are efficient and can predict in assessing the risk of susceptibility to dental caries in study group. CONCLUSION: The dental caries susceptibility of an individual increased with incidence of whorl pattern and it decreased with incidence of loop pattern. CLINICAL SIGNIFICANCE: The dermatoglyphic patterns may be utilized effectively to study the genetic basis of dental caries. In a developing country like India, it might prove to be a noninvasive, inexpensive and effective tool for screening.


Asunto(s)
Susceptibilidad a Caries Dentarias/genética , Caries Dental/genética , Dermatoglifia , Estudios de Casos y Controles , Niño , Preescolar , Índice CPO , Femenino , Humanos , India , Masculino , Estadísticas no Paramétricas
13.
Ocul Immunol Inflamm ; 30(4): 930-939, 2022 May 19.
Artículo en Inglés | MEDLINE | ID: mdl-33792498

RESUMEN

BACKGROUND: Children from coastal areas of South India develop granulomatous eye disease after swimming in their village ponds, the causative organism being trematode Procerovum. AIM: To understand the pathogenesis by analyzing the cellular profile, cytokines, and chemokines of aqueous fluid. METHODS: This was a prospective study over 1 year on pediatric patients with ocular granuloma caused by a Trematode Fluke Procerovum sp. Granuloma was aspirated along with 100 µl volume of aqueous humor. Immunohistochemical analysis of granuloma was performed. Bio-Plex Pro™ Human Cytokine 17-plex Assay (M5000031YV) was used to measure cytokine and chemokines. RESULTS: The immunohistochemistry revealed predominantly eosinophils, followed by macrophages (CD68+) and T - lymphocytes (CD4+). Both T-helper (Th) 1 and 2 mediated cytokines and chemokine levels were significantly high. As the disease duration increased, direct Th1 response reduced and was replaced by IL-12 and IL-17 mediated secondary Th1 response. CONCLUSION: Procerovum associated granulomatous disease is immunologically characterized by Th1 and Th2 cell-mediated responses. A balance between both arms maintains the eyes between granulomatous inflammation and healing by fibrosis.


Asunto(s)
Citocinas , Trematodos , Animales , Humor Acuoso , Quimiocinas , Niño , Granuloma/diagnóstico , Humanos , Estudios Prospectivos
14.
Med Biol Eng Comput ; 60(9): 2681-2691, 2022 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-35834050

RESUMEN

Deep learning provides the healthcare industry with the ability to analyse data at exceptional speeds without compromising on accuracy. These techniques are applicable to healthcare domain for accurate and timely prediction. Convolutional neural network is a class of deep learning methods which has become dominant in various computer vision tasks and is attracting interest across a variety of domains, including radiology. Lung diseases such as tuberculosis (TB), bacterial and viral pneumonias, and COVID-19 are not predicted accurately due to availability of very few samples for either of the lung diseases. The disease could be easily diagnosed using X-ray or CT scan images. But the number of images available for each of the disease is not as equally as other resulting in imbalance nature of input data. Conventional supervised machine learning methods do not achieve higher accuracy when trained using a lesser amount of COVID-19 data samples. Image data augmentation is a technique that can be used to artificially expand the size of a training dataset by creating modified versions of images in the dataset. Data augmentation helped reduce overfitting when training a deep neural network. The SMOTE (Synthetic Minority Oversampling Technique) algorithm is used for the purpose of balancing the classes. The novelty in this research work is to apply combined data augmentation and class balance techniques before classification of tuberculosis, pneumonia, and COVID-19. The classification accuracy obtained with the proposed multi-level classification after training the model is recorded as 97.4% for TB and pneumonia and 88% for bacterial, viral, and COVID-19 classifications. The proposed multi-level classification method produced is ~8 to ~10% improvement in classification accuracy when compared with the existing methods in this area of research. The results reveal the fact that the proposed system is scalable to growing medical data and classifies lung diseases and its sub-types in less time with higher accuracy.


Asunto(s)
COVID-19 , Aprendizaje Profundo , Enfermedades Pulmonares , Neumonía Viral , Tuberculosis , Humanos , Neumonía Viral/diagnóstico por imagen
15.
iScience ; 25(3): 103938, 2022 Mar 18.
Artículo en Inglés | MEDLINE | ID: mdl-35265812

RESUMEN

Many experimental studies have examined behavioral and electrophysiological responses of mosquitoes to odors. However, the differences across studies in data collection, processing, and reporting make it difficult to perform large-scale analyses combining data from multiple studies. Here we extract and standardize data for 12 mosquito species, along with Drosophila melanogaster for comparison, from over 170 studies and curate the Mosquito Olfactory Response Ensemble (MORE), publicly available at https://neuralsystems.github.io/MORE. We demonstrate the ability of MORE in generating biological insights by finding patterns across studies. Our analyses reveal that ORs are tuned to specific ranges of several physicochemical properties of odorants; the empty-neuron recording technique for measuring OR responses is more sensitive than the Xenopus oocyte technique; there are systematic differences in the behavioral preferences reported by different types of assays; and odorants tend to become less attractive or more aversive at higher concentrations.

16.
Microbiology (Reading) ; 157(2): 430-437, 2011 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-28206903

RESUMEN

Here, we report the characterization of 122 Pseudomonas aeruginosa clinical isolates from three distinct geographical locations: Dartmouth Hitchcock Medical Center in New Hampshire, USA, the Charles T. Campbell Eye Microbiology Lab at the University of Pittsburgh Medical Center, USA, and the Aravind Eye Hospital in Madurai, India. We identified and located clustered regularly interspaced short palindromic repeats (CRISPR) in 45/122 clinical isolates and sequenced these CRISPR, finding that Yersinia subtype CRISPR regions (33 %) were more prevalent than the Escherichia CRISPR region subtype (6 %) in these P. aeruginosa clinical isolates. Further, we observed 132 unique spacers from these 45 CRISPR that are 100 % identical to prophages or sequenced temperate bacteriophage capable of becoming prophages. Most intriguingly, all of these 132 viral spacers matched to temperate bacteriophage/prophages capable of inserting into the host chromosome, but not to extrachromosomally replicating lytic P. aeruginosa bacteriophage. We next assessed the ability of the more prevalent Yersinia subtype CRISPR regions to mediate resistance to bacteriophage infection or lysogeny by deleting the entire CRISPR region from sequenced strain UCBPP-PA14 and six clinical isolates. We found no change in CRISPR-mediated resistance to bacteriophage infection or lysogeny rate even for CRISPR with spacers 100 % identical to a region of the infecting bacteriophage. Lastly, to show these CRISPR and cas genes were expressed and functional, we demonstrated production of small CRISPR RNAs. This work provides both the first examination to our knowledge of CRISPR regions within clinical P. aeruginosa isolates and a collection of defined CRISPR-positive and -negative strains for further CRISPR and cas gene studies.

17.
Microbiology (Reading) ; 157(Pt 2): 430-7, 2011 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-21081758

RESUMEN

Here, we report the characterization of 122 Pseudomonas aeruginosa clinical isolates from three distinct geographical locations: Dartmouth Hitchcock Medical Center in New Hampshire, USA, the Charles T. Campbell Eye Microbiology Lab at the University of Pittsburgh Medical Center, USA, and the Aravind Eye Hospital in Madurai, India. We identified and located clustered regularly interspaced short palindromic repeats (CRISPR) in 45/122 clinical isolates and sequenced these CRISPR, finding that Yersinia subtype CRISPR regions (33 %) were more prevalent than the Escherichia CRISPR region subtype (6 %) in these P. aeruginosa clinical isolates. Further, we observed 132 unique spacers from these 45 CRISPR that are 100 % identical to prophages or sequenced temperate bacteriophage capable of becoming prophages. Most intriguingly, all of these 132 viral spacers matched to temperate bacteriophage/prophages capable of inserting into the host chromosome, but not to extrachromosomally replicating lytic P. aeruginosa bacteriophage. We next assessed the ability of the more prevalent Yersinia subtype CRISPR regions to mediate resistance to bacteriophage infection or lysogeny by deleting the entire CRISPR region from sequenced strain UCBPP-PA14 and six clinical isolates. We found no change in CRISPR-mediated resistance to bacteriophage infection or lysogeny rate even for CRISPR with spacers 100 % identical to a region of the infecting bacteriophage. Lastly, to show these CRISPR and cas genes were expressed and functional, we demonstrated production of small CRISPR RNAs. This work provides both the first examination to our knowledge of CRISPR regions within clinical P. aeruginosa isolates and a collection of defined CRISPR-positive and -negative strains for further CRISPR and cas gene studies.


Asunto(s)
ADN Intergénico/genética , Secuencias Invertidas Repetidas , Pseudomonas aeruginosa/genética , Bacteriófagos/genética , Secuencia Conservada , ADN Bacteriano/genética , Genes Bacterianos , India , Lisogenia , Anotación de Secuencia Molecular , New Hampshire , Pennsylvania , Profagos/genética , Pseudomonas aeruginosa/aislamiento & purificación , Pseudomonas aeruginosa/virología , Análisis de Secuencia de ADN , Eliminación de Secuencia
18.
Micron ; 130: 102817, 2020 03.
Artículo en Inglés | MEDLINE | ID: mdl-31924593

RESUMEN

Presence of heavy metal in industrial wastewater is hazardous to the surrounding environment. Biosorption of heavy metal is an effective technology for the treatment of industrial wastewater. This research work has been carried out on removal of chromium (III) metal ions by employing waste fish scales as bioadsorbent. A batch adsorption process was carried out with different adsorbent dosage, solution pH and contact time. The results show the highest 99.7518 % chromium (III) metal ions at bioadsorbent dosage 0.8 g, pH of the solution 5 and contact time 90 min, initial concentration 150 mg/l chromium ion. The adsorption isotherms data fitted well with the Langmuir isotherm model with R2 = 0.9998, qmax = 18.3486 mg/g, and RL = 0.00007325. As well as pseudo-first and second kinetics model was also analyzed for the description of adsorption and found to be well fitted (R2 = 1) for adsorption kinetics. The surface properties activated fish scales and chromium loaded fish scale were investigated by scanning electron microscopy, X-ray spectroscopy, Fourier-transform infrared spectroscopy, and thermal analysis and agree with outcomes.


Asunto(s)
Escamas de Animales/química , Cromo/aislamiento & purificación , Peces , Contaminantes Químicos del Agua/aislamiento & purificación , Adsorción , Animales , Concentración de Iones de Hidrógeno , Cinética , Metales Pesados/aislamiento & purificación , Microscopía Electrónica de Rastreo , Espectroscopía Infrarroja por Transformada de Fourier , Propiedades de Superficie
19.
J Int Soc Prev Community Dent ; 10(2): 205-212, 2020.
Artículo en Inglés | MEDLINE | ID: mdl-32670910

RESUMEN

AIMS AND OBJECTIVES: This study aimed to evaluate the efficacy of Nd:YAG and Er:YAG lasers in removing the smear layer and to study the morphological and chemical alterations of the root surface using scanning electron microscopy (SEM) and infrared (IR) spectroscopy. MATERIAL AND METHODS: Fifty-five extracted upper incisor teeth were collected and 110 specimens of size 3 mm × 4 mm × 1 mm were prepared. For SEM evaluation, these samples were divided into six groups: A, B, and C. Group A comprised five samples that served as control. Groups B and C were further divided into five subgroups and each subgroup comprised five samples. All the specimens within the subgroups of B and C irradiated with 100, 200, 300, 400, and 500 mJ of Er:YAG laser and 211.66, 423.33, 635, 846.66, and 1058.33 J/cm2 of Nd:YAG laser, respectively. The morphological changes of the laser-treated sites were observed qualitatively using an arbitrary scale under SEM. The data obtained were statistically analyzed by one-way analysis of variance (ANOVA) multiple range test by Turkey's honestly significant difference and Mann-Whitney U test. In chemical structural changes, Group D comprised five samples that served as nonirradiated control and Groups E and F were irradiated with the same aforementioned parameter and evaluated using Fourier-transform infrared spectroscopy. RESULTS: Er:YAG laser at 100 mJ effectively removed smear layer without any crater formation. The Nd:YAG laser removed the smear layer at the energy density of 211.66 J/cm2 and 423.33J/cm2. The energy density of 1058.33 J/cm2 showed visible charring and deep crater with increased area of melted and resolidified minerals in SEM. In the chemical changes, IR spectroscopy graph showed the reduction in peak intensity beyond 846.66 J/cm2 of and new absorption band was noticed (2010cm-1 and 2017cm-1) at samples treated with 846.66 and 1058.33 J/cm2 of Nd:YAG laser. CONCLUSION: Er:YAG laser at lower energy density effectively removed smear layer without production of toxic substance as compared with Nd:YAG laser. Thus, Er:YAG laser can be used as an effective root biomodification agent.

20.
Vet Q ; 40(1): 229-242, 2020 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-32886028

RESUMEN

Bluetongue (BT) is an infectious viral disease which affects a wide range of ruminants and was first reported in India in 1964. In view of the absence of comprehensive information on the BT status in India, this study presents the seroprevalence on BT in farm animals of India based-on a systematic review and meta-analysis. A systematic review was conducted to identify the published articles (2001-2018) reporting the seroprevalence of BT in sheep, goats, cattle, buffalo, camels, and Mithun (Bos frontalis) from India. From 409 research articles, 71 fulfilled the inclusion criteria and meta-analysis for proportions was carried out targeting the eligible studies. From these, 144 strata level data were extracted with a sample size of 14048 sheep, 14696 goats, 5218 cattle, 2653 buffaloes, 2062 camels, and 222 Mithun. Overall, the analyses showed that the BT seroprevalence of 43% (95% CI: 38-49%) in goats, 39% (95% CI: 33-46%) in sheep, 38% (95% CI: 25-45%) in cattle, 34% (95% CI: 20-51%) in buffaloes, 16% (95% CI: 10-22%) in camels, and 66% (95% CI: 17-95%) in Mithun. Furthermore, the meta-regression analysis suggested that serological tests, geographical region, and sample size were the prime moderators. Meta-analytic study indicates the BT seropositivity in 25.35 million sheep (95% CI: 21.5-29.9), 58 million goats (95% CI: 51.3-66.2), 66.8 million cattle (95% CI: 47.7-86), 37.0 million buffaloes (95% CI: 21.7-55.4), 0.06 million camels (95% CI: 0.04-0.09), and 0.19 million Mithun (95% CI: 0.05-0.28). The findings highlight the variation of BT seropositivity in different geographical regions of India.


Asunto(s)
Lengua Azul/epidemiología , Rumiantes/virología , Animales , Lengua Azul/sangre , Lengua Azul/diagnóstico , India/epidemiología , Ganado/virología , Factores de Riesgo , Estudios Seroepidemiológicos , Ovinos , Enfermedades de las Ovejas/epidemiología , Enfermedades de las Ovejas/virología
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