High-performance activation of ozone by sonocavitation for BTEX degradation in water.

This work presents a novel advanced oxidation process (AOP) for degradation of emerging organic pollutants - benzene, toluene, ethylbenzene and xylenes (BTEXs) in water. A comparative study was performed for sonocavitation assisted ozonation under 40-120 kHz and 80-200 kHz dual frequency ultrasounds (DFUS). Based on the obtained results, the combination of 40-120 kHz i.e., low-frequency US (LFDUS) with O3 exhibited excellent oxidation capacity degrading 99.37-99.69% of BTEXs in 40 min, while 86.09-91.76% of BTEX degradation was achieved after 60 min in 80-200 kHz i.e., high-frequency US (HFDUS) combined with O3. The synergistic indexes determined using degradation rate constants were found as 7.86 and 2.9 for LFDUS/O3 and HFDUS/O3 processes, respectively. The higher extend of BTEX degradation in both processes was observed at pH 6.5 and 10. Among the reactive oxygen species (ROSs), hydroxyl radicals (HO•) were found predominant according to scavenging tests, singlet oxygen also importantly contributed in degradation, while O2•- radicals had a minor contribution. Sulfate (SO42-) ions demonstrated higher inhibitory effect compared to chloride (Cl-) and carbonate (CO32-) ions in both processes. Degradation pathways of BTEX was proposed based on the intermediates identified using GC-MS technique.

A review of metallurgical slags as catalysts in advanced oxidation processes for removal of refractory organic pollutants in wastewater.

With the rapid growth of the metallurgical industry, there is a significant increase in the production of metallurgical slags. The waste slags pose significant challenges for their disposal because of complex compositions, low utilization rates, and environmental toxicity. One promising approach is to utilize metallurgical slags as catalysts for treatment of refractory organic pollutants in wastewater through advanced oxidation processes (AOPs), achieving the objective of "treating waste with waste". This work provides a literature review of the source, production, and chemical composition of metallurgical slags, including steel slag, copper slag, electrolytic manganese residue, and red mud. It emphasizes the modification methods of metallurgical slags as catalysts and the application in AOPs for degradation of refractory organic pollutants. The reaction conditions, catalytic performance, and degradation mechanisms of organic pollutants using metallurgical slags are summarized. Studies have proved the feasibility of using metallurgical slags as catalysts for removing various pollutants by AOPs. The catalytic performance was significantly influenced by slags-derived catalysts, catalyst modification, and process factors. Future research should focus on addressing the safety and stability of catalysts, developing green and efficient modification methods, enhancing degradation efficiency, and implementing large-scale treatment of real wastewater. This work offers insights into the resource utilization of metallurgical slags and pollutant degradation in wastewater.

Straw-derived biochar for the removal of antibiotics from water: Adsorption and degradation mechanisms, recent advancements and challenges.

Antibiotics, a kind of containments with the properties of widely distributed and difficult to degrade, has aroused extensive attention in the world. As a prevalent agricultural waste, straws can be utilized to prepare biochar (straw-derived biochar, SBC) to remove antibiotics from aquatic environment. To date, although a number of review papers have summarized and discussed research on biochar application in wastewater treatment and soil remediation, there are few reviews on SBC for antibiotic removal. Due to the limitations of poor adsorption and degradation performance of the pristine SBC, it is necessary to modify SBC to improve its applications for antibiotics removal. The maximum antibiotic removal capacity of modified SBC could reach 1346.55 mg/g. Moreover, the adsorption mechanisms between modified SBC and antibiotics mainly involve π-π interactions, electrostatic interactions, hydrophobic interactions, and charge dipole interactions. In addition, the modified SBC could completely degrade antibiotics within 6 min by activating oxidants, such as PS, PDS, H2O2, and O3. The mechanisms of antibiotic degradation by SBC activated oxidants mainly include free radicals (including SO4•-, •OH, and O2•-) and non-free radical pathway (such as, 1O2, electrons transfer, and surface-confined reaction). Although SBC and modified SBC have demonstrated excellent performance in removing antibiotics, they still face some challenges in practical applications, such as poor stability, high cost, and difficulties in recycling. Therefore, the further research directions and trends for the development of SBC and biochar-based materials should be taken into consideration.

Immobilization of purified enzyme EreB in metalorganic framework (MOF) mesopores for erythromycin degradation.

Erythromycin, a commonly used macrolide antibiotic, plays a crucial role in both human medicine and animal husbandry. However, its abuse has led to residual presence in the environment, with problems such as the emergence of resistant bacteria and enrichment of resistance genes. These issues pose significant risks to human health. Thus far, there are no effective, environmentally friendly methods to manage this problem. Enzymes can specifically degrade erythromycin without causing other problems, but their unrecyclability and environmental vulnerability hinder large-scale application. Enzyme immobilization may help to solve these problems. This study used Cu-BTC, a synthetic metal-organic framework, to immobilize the erythromycin-degrading enzyme EreB. The loading temperature and enzyme quantity were optimized. The Cu-BTC and EreB@Cu-BTC were characterized by various methods to confirm the preparation of Cu-BTC and immobilization of EreB. The maximum enzyme loading capacity was 66.5 mg g-1. In terms of enzymatic properties, immobilized EreB had improved heat (25-45 °C) and alkaline (6.5-10) tolerance, along with greater affinity between the enzyme and its substrate; Km decreased from 438.49 to 372.30 mM. Recycling was also achieved; after 10 cycles, 57.12% of the enzyme activity was maintained. After composite degradation, the antibacterial activity of erythromycin-containing wastewater was examined; the results showed that the novel composite could completely inactivate erythromycin. In summary, Cu-BTC was an ideal carrier for immobilization of the enzyme EreB, and the EreB@Cu-BTC composite has good prospects for the treatment of erythromycin-containing wastewater.

Biochar/layered double hydroxides composites as catalysts for treatment of organic wastewater by advanced oxidation processes: A review.

Heterogeneous advanced oxidation process has been widely studied as an effective method for removing organic pollutants in wastewater, but the development of efficient catalysts is still challenging. This review summaries the present status of researches on biochar/layered double hydroxides composites (BLDHCs) as catalysts for treatment of organic wastewater. The synthesis methods of layered double hydroxides, the characterizations of BLDHCs, the impacts of process factors influencing catalytic performance, and research advances in various advanced oxidation processes are discussed in this work. The integration of layered double hydroxides and biochar provides synthetic effects for improving pollutant removal. The enhanced pollutant degradation in heterogeneous Fenton, sulfate radical-based, sono-assisted, and photo-assisted processes using BLDHCs have been verified. Pollutant degradation in heterogeneous advanced oxidation processes using BLDHCs is influenced by process factors such as catalyst dosage, oxidant addition, solution pH, reaction time, temperature, and co-existing substances. BLDHCs are promising catalysts due to the unique features including easy preparation, distinct structure, adjustable metal ions, and high stability. Currently, catalytic degradation of organic pollutants using BLDHCs is still in its infancy. More researches should be conducted on the controllable synthesis of BLDHCs, the in-depth understanding of catalytic mechanism, the improvement of catalytic performance, and large-scale application of treating real wastewater.

Electrostatic deposition of TiO2 nanoparticles on porous wood veneer for improved membrane filtration performance and antifouling properties.

Wood has been a promising water purifier material on account of its abundant natural transport channels, easy processing, and renewability, which is mainly focused on its utilization in growth direction for effective separation.Wood veneer manufacured from raw wood block has a reversed-tree pore structure, and possesses advantages of low cost, easy fabrication, material saving, and abundant sources. To realize its functionalization and practicable application for membrane separation, modification of wood veneer is prerequisite. Herein, thin wood veneer with disparate utilization direction of wood was developed to design filter membrane loading TiO2 nanoparticles for treatment of dye wastewater. Wood veneer with reversed-tree transport pathways exhibits unique porous structure, and filtering direction and wood growth direction is almost orthogonal generated numerous sinuous channels. Thereout, sufficient area for loading TiO2 nanoparticles and contacting pollutants as well as appropriate water transport pathways at significantly shrinking thickness of wood (the thickness of 0.2 mm) can be provide by these sinuous channels. TiO2 nanoparticles was first modified by (3-Aminopropyl)triethoxysilane with high positive charge, and immobilized on negatively charged wood surface through atmospheric impregnation via strong electrostatic attractive interaction. Vast quantities of exposed TiO2 nanoparticles on wood cell lumens significantly enhance the adsorption ability for dye contaminants, resulting in a high membrane separation performance. The flux of TiO2/wood veneer membrane can achieve high level of 636.94 L/(m2h) with considerable methylene blue removal of 99.9% at 0.01 MPa. Meanwhile, it shows good cycling stability as well as decent flexibility and excellent mechanical strength. Moreover, the designed membrane with photocatalytic function of TiO2 also displays impressive decontaminated and recycling ability. The flux can recover its pre-recession level after 10 h light irradiation. The designed TiO2/wood veneer with simple preparation process and excellent water treatment capacity exhibits promising results for practical wastewater treatment.

Machine learning: Next promising trend for microplastics study.

Microplastics (MPs), as an emerging pollutant, pose a significant threat to humans and ecosystems. However, traditional MPs characterization methods are limited by sample requirements and characterization time. Machine Learning (ML) has emerged as a vital technology for analyzing MPs pollution due to its accuracy, broad application, and powerful feature extraction. Nevertheless, environmental scientists require threshold knowledge before using ML, restricting the ML application in MPs research. Furthermore, imbalanced development of ML in MPs research is a pressing concern. In order to achieve a wide ML application in MPs research, in this review, we comprehensively discussed the size and sources of MPs datasets in relevant literature to help environmental scientists deepen their understanding of the construction of MPs datasets. Commonly used ML algorithms are analyzed from the perspective of interpretability and the need for computer facilities. Additionally, methods for improving and evaluating ML model performance, such as dataset pre-processing, model optimization, and model assessment metrics, are discussed. According to datasets and characterization techniques, MPs identification using ML was divided into three categories in this work: spectral identification, image identification, and spectral imaging identification. Finally, other applications of ML in MPs studies, including toxicity analysis, pollutants adsorption, and microbial colonization, are comprehensively discussed, which reveals the great application potential of ML. Based on the discussion above, this review suggests an algorithm selection strategy to assist researchers in selecting the most suitable ML algorithm in different situations, improving efficiency and decreasing the costs of trial and error. We believe that this work sheds light on the application of ML in MPs study.

Biodegradation efficiency and mechanism of erythromycin degradation by Paracoccus versutus W7.

Continuous and excessive usage of erythromycin results in serious environmental pollution and presents a health risk to humans. Biological treatment is considered as an efficient and economical method to remove it from the environment. In this study, a novel erythromycin-degrading bacterial strain, W7, isolated from sewage sludge was identified as Paracoccus versutus. Strain W7 degraded 58.5% of 50 mg/L erythromycin in 72 h under the optimal conditions of 35 °C, pH 7.0, and 0.1% sodium citrate with yeast powder in mineral salt medium. It completely eliminated erythromycin from erythromycin fermentation residue at concentrations of 100 and 300 mg/L within 36 and 60 h, respectively. Erythromycin esterase (EreA) was found to be involved in erythromycin metabolism in this strain and was expressed successfully. EreA could hydrolyze erythromycin, and its maximum activity occurred at pH 8.5 and 35 °C. Finally, six intermediates of erythromycin degraded by strain W7 were detected by high performance liquid chromatography mass spectrometry. Based on the novel intermediates and enzymes, we determined two possible pathways of erythromycin degradation by strain W7. This study broadened our understanding of the erythromycin catabolic processes of P. versutus and developed a feasible microbial strategy for removing erythromycin from erythromycin fermentation residue, wastewater, and other erythromycin-contaminated environments.

Pretreatment with high oxygen controlled atmosphere enhanced fresh-cut white mushroom (Agaricus bisporus) quality via activating wounding stress defenses.

BACKGROUND: High oxygen treatment has been proven to be effective in fresh-cut white mushroom preservation, however, the preservation effect and possible mechanisms in high oxygen controlled atmosphere pretreatment (HOCAP) on wounding stress are incompletely understood. RESULTS: In this study, based on the time chosen of HOCAP research, whole white mushrooms treated with 3 h HOCAP (80% O2 + 20% CO2 ) and the wounding resistant responses of their slices were mainly investigated through phenylpropane pathway, reactive oxygen species (ROS) scavenging system, and ascorbate-glutathione (AsA-GSH) cycle. Results showed that 3 h HOCAP can induce the production of hydrogen peroxide (H2 O2 ) and superoxide anion (O2 -• ) in the early stage, as well as the NADPH oxidase activity. Enzymes and endogenous antioxidants involved in ROS scavenging were enhanced by HOCAP during the whole storage. Besides, HOCAP maintained high level of phenylalanine ammonia-lyase (PAL) activity, enhanced the content of total phenolic and lignin, accelerated the AsA-GSH cycle. CONCLUSION: The results demonstrated that HOCAP induced defense responses by increasing the ROS in the early stage which stimulated the activities of ROS scavenging enzymes, along with the capability of increasing for wounding stress defense and resistance. This study provides a theoretical pretreatment technology for fresh-cut white mushroom preservation. © 2021 Society of Chemical Industry.

Ultrasound-enhanced catalytic degradation of simulated dye wastewater using waste printed circuit boards: catalytic performance and artificial neuron network-based simulation.

Recent developments of heterogeneous advanced oxidation for refractory organic contaminants and catalysts made of solid waste have attracted much attention. In this work, waste printed circuit board (wPCB) was used for catalytic degradation of simulated textile wastewater enhanced by ultrasound. Catalytic degradation of rhodamine B (RhB) and methylene blue (MB) was conducted in the presence of H2O2. Effect of ultrasound, wPCB, H2O2, pH, and dye concentration was investigated by single factor experiments. The growing catalytic efficiency was determined by ultrasound. The removal efficiency of MB and RhB are influenced by wPCB, H2O2, pH, and dye concentration. Degradation efficiency is accelerated with increasing wPCB dosage and H2O2 and decreasing dye concentration. Effective degradation of MB and RhB is obtained under broader pH region, attractively at neutral pH. Under optimal conditions, MB removal reaches 98.83% at 90 min while RhB removal reaches 99.57% at 80 min. Hydroxyl radicals play an important role in catalytic process. Tentative mechanism for catalytic degradation of MB and RhB are discussed based on multiple characterizations. Superior reusability of wPCB proves that wPCB is highly durable catalyst. Due to low cost and high efficiency, wPCB is attractive as effective catalyst for treatment of organic wastewater. Artificial neuron network-based (ANN) simulation, as a widely used artificial intelligence algorithm, was one of preferred methods for the wastewater treatment due to its unique properties in solving complex processes. An ANN model was designed for the prediction of the performance of ultrasound-enhanced catalytic degradation with a high R value (0.99).

Formation of autotriploid Carassius auratus and its fertility-related genes analysis.

BACKGROUND: Formation of triploid organism is useful in genetics and breeding. In this study, autotriploid Carassius auratus (3nRR, 3n = 150) was generated from Carassius auratus red var. (RCC, 2n = 100) (♀) and autotetraploid Carassius auratus (4nRR, 4n = 200) (♂). The female 3nRR produced haploid, diploid and triploid eggs, whereas the male 3nRR was infertile. The aim of the present study was to explore fertility of potential candidate genes of 3nRR. RESULTS: Gonadal transcriptome profiling of four groups (3 females RCC (FRCC), 3 males 4nRR (M4nRR), 3 males 3nRR (M3nRR) and 3 females 3nRR (F3nRR)) was performed using RNA-SEq. A total of 78.90 Gb of clean short reads and 24,262 differentially expressed transcripts (DETs), including 20,155 in F3nRR vs. FRCC and 4,107 in M3nRR vs. M4nRR were identified. A total of 106 enriched pathways were identified through KEGG enrichment analysis. Out of the enriched pathways, 44 and 62 signalling pathways were identified in F3nRR vs. FRCC and M3nRR vs. M4nRR, respectively. A total of 80 and 25 potential candidate genes for fertility-related in F3nRR and M3nRR were identified, respectively, through GO, KEGG analyses and the published literature. Moreover, protein-protein interaction (PPI) network construction of these fertility-associated genes were performed. Analysis of the PPI networks showed that 6 hub genes (MYC, SOX2, BMP4, GATA4, PTEN and BMP2) were involved in female fertility of F3nRR, and 2 hub genes (TP53 and FGF2) were involved in male sterility of M3nRR. CONCLUSIONS: Establishment of autotriploid fish offers an ideal model to study reproductive traits of triploid fish. RNA-Seq data revealed 6 genes, namely, MYC, SOX2, BMP4, GATA4, PTEN and BMP2, involved in the female fertility of the F3nRR. Moreover, 2 genes, namely, TP53 and FGF2, were related to the male sterility of the M3nRR. These findings provide information on reproduction and breeding in triploid fish.

A clean and efficient flotation towards recovery of hazardous polyvinyl chloride and polycarbonate microplastics through selective aluminum coating: Process, mechanism, and optimization.

Polyvinyl chloride (PVC) and polycarbonate (PC) microplastics are major sources of hazardous chlorine and bisphenol A, threatening the ecosystem and environment. Plastic recycling can control the source of microplastics pollution, but the recycling of PVC and PC will be prevented by invalid separation. We established a novel and clean flotation method to separate PVC and PC microplastics by using aluminum coating. Trace amounts of Al(OH)3 can selectively coat the PVC microplastics surface due to its strong affinity for PVC. The contact angle of PVC decreases by 24° due to abundant hydroxyl groups of Al(OH)3 coating, whereas PC remained hydrophobic. Response surface methodology (RSM) combining Box-Behnken design (BBD) is used to optimize modification. A quadratic model is established to predict PC purity, explore the interaction between pH, aluminum chloride concentration, and ultrasonic duration. The recovery and purity of microplastics can exceed 99.65% with parameter optimization. The effects of multi-component, brand, shape, size, and mass ratio of plastics are utilized to evaluate the application potential. The suitable situations and limits of this method are disclosed. The aluminum coating offers significant benefits over other modifications in terms of reaction temperature, treatment time, and pollution prevention. Flotation based on aluminum coating provides a new insight for separating and recycling microplastics.

Ultrasound assisted Fenton-like degradation of dyes using copper doped graphitic carbon nitride.

A novel copper doped graphitic carbon nitride (Cu-C3N4) was successfully synthesized and used as an effective Fenton-like catalyst. Cu-C3N4 was characterized by scanning electron microscopy, surface area analyzer, Fourier transform infrared spectroscopy, X-ray diffractometer, and X-ray photoelectron spectroscopy. Effect of process parameters including catalyst dosage, hydrogen peroxide (H2O2) concentration, solution pH, and initial methylene blue (MB) concentration was investigated to evaluate catalytic performance. The pseudo first-order kinetic model was used to describe the catalytic process. The enhancement of MB degradation is observed assisted by ultrasound. MB degradation of 96% is obtained within 30 min in Cu-C3N4/H2O2/ultrasound system, and the corresponding rate constant is 0.099 min-1. Effective MB degradation is obtained over a broad pH range (3.3-9.9). The catalytic mechanism is examined by ultraviolet-visible spectra, quenching test, and electron spin resonance determination. The dominant mechanism of MB degradation is ascribed to the ultrasonic H2O2 activation by Cu-C3N4 for hydroxyl radical generation. Cu-C3N4 has good reusability and is effective to degrade rhodamine B and acid orange 7. This work not only contributes to the field of wastewater treatment, but also provides insights into the synthesis of Fenton-like catalysts. The results manifest that Cu-C3N4 is a promising Fenton-like catalyst for dye degradation in the field of environmental pollution remediation.

Diversely Functionalised Cytochalasins through Mutasynthesis and Semi-Synthesis.

Mutasynthesis of pyrichalasin H from Magnaporthe grisea NI980 yielded a series of unprecedented 4'-substituted cytochalasin analogues in titres as high as the wild-type system (≈60 mg L-1 ). Halogenated, O-alkyl, O-allyl and O-propargyl examples were formed, as well as a 4'-azido analogue. 4'-O-Propargyl and 4'-azido analogues reacted smoothly in Huisgen cycloaddition reactions, whereas p-Br and p-I compounds reacted in Pd-catalysed cross-coupling reactions. A series of examples of biotin-linked, dye-linked and dimeric cytochalasins was rapidly created. In vitro and in vivo bioassays of these compounds showed that the 4'-halogenated and azido derivatives retained their cytotoxicity and antifungal activities; but a unique 4'-amino analogue was inactive. Attachment of larger substituents attenuated the bioactivities. In vivo actin-binding studies with adherent mammalian cells showed that actin remains the likely intracellular target. Dye-linked compounds revealed visualisation of intracellular actin structures even in the absence of phalloidin, thus constituting a potential new class of actin-visualisation tools with filament-barbed end-binding specificity.

Comparative analyses of the Sox9a-Amh-Cyp19a1a regulatory Cascade in Autotetraploid fish and its diploid parent.

BACKGROUND: Autotetraploid Carassius auratus (4nRCC, 4n = 200, RRRR) was derived from the whole genome duplication of diploid red crucian carp (Carassius auratus red var.) (2nRCC, 2n = 100, RR). To investigate the genetic effects of tetraploidization, we analyzed DNA variation, epigenetic modification and gene expression changes in the Sox9a-Amh-Cyp19a1a regulatory cascade between 4nRCC and 2nRCC. RESULTS: We found that the Sox9a gene contained two variants in 2nRCC and four variants in 4nRCC. Compared with that in 2nRCC, DNA methylation in the promoter regions of the Amh and Cyp19a1a genes in 4nRCC was altered by single nucleotide polymorphism (SNP) mutations, which resulted in the insertions and deletions of CpG sites, and the methylation levels of the Sox9a, Amh and Cyp19a1a genes increased after tetraploidization. The gene expression level of the Sox9a-Amh-Cyp19a1a regulatory cascade was downregulated in 4nRCC compared with that in 2nRCC. CONCLUSION: The above results demonstrate that tetraploidization leads to significant changes in the genome, epigenetic modification and gene expression in the Sox9a-Amh-Cyp19a1a regulatory cascade; these findings increase the extant knowledge regarding the effects of polyploidization.

Complex emulsions for shape control based on mass transfer and phase separation.

Complex emulsions are used to fabricate new morphologies of multiple Janus droplets, evolving from non-engulfing to complete engulfing core/shell configuration. The produced droplets contain an aqueous phase of dextran (DEX) solution and an oil phase, which is mixed with ethoxylated trimethylolpropane triacrylate (ETPTA) and poly(ethylene glycol) diacrylate (PEGDA). The PEGDA in the oil phase is transferred into the aqueous phase to form complex morphologies due to the phase separation of PEGDA and DEX. The effects are investigated including the ratio of oil to aqueous phase, the content of initial PEGDA, DEX and surfactants, and the type of surfactants. DEX/PEGDA-ETPTA core/shell-single phase Janus droplets are formed with an increasing engulfed oil droplet into the aqueous droplet while the ratio of oil to aqueous phase increases or the initial PEGDA content increases. The high DEX content leads to the DEX-PEGDA-ETPTA doublet Janus. The use of surfactants polyglycerol polyricinoleate (PGPR) and Span 80 results in the formation of DEX/PEGDA/ETPTA single core/double shell and DEX/PEGDA-ETPTA core/shell-single phase Janus droplets, respectively. These complex emulsions are utilized to fabricate solid particles of complex shapes. This method contributes to new material design underpinned by mass transfer and phase separation, which can be extended to other complex emulsion systems.

Biodegradation of acephate by Bacillus paramycoides NDZ and its degradation pathway.

Acephate is widely used in agriculture, but its poisonous metabolites and poor sorption characteristics make it a serious environmental pollutant and toxicant to human health. To screen novel bacteria for biodegradation of acephate and uncover its degradation pathway, a strain called NDZ that is capable of utilizing acephate as a sole carbon and energy source was isolated from severely contaminated cultivated land. The bacterium was identified as Bacillus paramycoides based on 16S rDNA sequence analyses. The growth and degradation capacities of B. paramycoides NDZ under different conditions were studied using optical density at 600 nm (OD600) and high-performance liquid chromatography (HPLC). The results showed that B. paramycoides NDZ can grow well with acephate as its sole carbon source (OD600 = 0.76), and degraded about 76% of acephate in mineral salt medium with an initial concentration of 500 mg/L within 48 h. The results of response surface methodology revealed the optimal conditions for degradation was 36 ℃ and pH 6.85 with 526 mg/L acephate. Gas chromatography-mass spectrometry showed that methamidophos was the main metabolite of B. paramycoides NDZ, different from the degradation products of high-temperature steam (121 °C, 103 kPa). Based on the detection of this intermediate, we inferred that acephate was degraded to methamidophos through hydrolysis of the amide linkage, after which methamidophos was degraded to some small molecules, which can be metabolized easily by the bacterium. In summary, B. paramycoides NDZ is a potentially useful bacterium for acephate degradation and remediation of contaminated soils.

LightCpG: a multi-view CpG sites detection on single-cell whole genome sequence data.

BACKGROUND: DNA methylation plays an important role in multiple biological processes that are closely related to human health. The study of DNA methylation can provide an insight into the mechanism behind human health and can also have a positive effect on the assessment of human health status. However, the available sequencing technology is limited by incomplete CpG coverage. Therefore, it is crucial to discover an efficient and convenient method capable of distinguishing between the states of CpG sites. Previous studies focused on identifying methylation states of the CpG sites in single cell, which only evaluated sequence information or structural information. RESULTS: In this paper, we propose a novel model, LightCpG, which combines the positional features with the sequence and structural features to provide information on the CpG sites at two stages. Next, we used the LightGBM model for training of the CpG site identification, and further utilized sample extraction and merged features to reduce the training time. Our results indicate that our method achieves outstanding performance in recognition of DNA methylation. The average AUC values of our method using the 25 human hepatocellular carcinoma cells (HCC) cell datasets and six human heptoplastoma-derived (HepG2) cell datasets were 0.9616 and 0.9213, respectively. Moreover, the average training times for our method on the HCC and HepG2 datasets were 8.3 and 5.06 s, respectively. Furthermore, the computational complexity of our model was much lower compared with other available methods that detect methylation states of the CpG sites. CONCLUSIONS: In summary, LightCpG is an accurate model for identifying the DNA methylation status of CpG sites in single cells. Furthermore, three types of feature extraction methods and two strategies used in LightCpG are helpful for other prediction problems.

Correction to: LightCpG: a multi-view CpG sites detection on single-cell whole genome sequence data.

Following the publication of this article [1], the authors reported that the images of Fig. 2 and Fig. 3 were switched during typesetting.

Design, synthesis, and bioactivity evaluation of novel Bcl-2/HDAC dual-target inhibitors for the treatment of multiple myeloma.

Multiple myeloma (MM) is the second most common haematological malignancy. Almost all patients with MM eventually relapse, and most recommended treatment protocols for the patients with relapsed refractory MM comprise a combination of drugs with different mechanisms of action. Therefore novel drugs are in urgent need in clinic. Bcl-2 inhibitors and HDAC inhibitors were proved their anti-MM effect in clinic or under clinical trials, and they were further discovered to have synergistic interactions. In this study, a series of Bcl-2/HDAC dual-target inhibitors were designed and synthesized. Among them, compounds 7e-7g showed good inhibitory activities against HDAC6 and high binding affinities to Bcl-2 protein simultaneously. They also displayed good growth inhibitory activities against human MM cell line RPMI-8226, which proved their potential value for the treatment of multiple myeloma.