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1.
Appl Environ Microbiol ; 82(1): 328-39, 2016 01 01.
Artículo en Inglés | MEDLINE | ID: mdl-26497459

RESUMEN

Although Salmonella has been isolated from 7.4 to 8.6% of domestic raw oysters, representing a significant risk for food-borne illness, little is known about the factors that influence their initial colonization by Salmonella. This study tested the hypothesis that specific regulatory changes enable a portion of the invading Salmonella population to colonize oysters. An in vivo promoter probe library screen identified 19 unique regions as regulated during colonization. The mutants in the nearest corresponding downstream genes were tested for colonization defects in oysters. Only one mutation, in ssrB, resulted in a significantly reduced ability to colonize oysters compared to that of wild-type Salmonella. Because ssrB regulates Salmonella pathogenicity island 2 (SPI-2)-dependent infections in vertebrate macrophages, the possibility that ssrB mediated colonization of oyster hemocytes in a similar manner was examined. However, no difference in hemocyte colonization was observed. The complementary hypothesis that signal exchange between Salmonella and the oyster's native microbial community aids colonization was also tested. Signals that triggered responses in quorum sensing (QS) reporters were shown to be produced by oyster-associated bacteria and present in oyster tissue. However, no evidence for signal exchange was observed in vivo. The sdiA reporter responded to salinity, suggesting that SdiA may also have a role in environmental sensing. Overall, this study suggests the initial colonization of live oysters by Salmonella is controlled by a limited number of regulators, including ssrB.


Asunto(s)
Crassostrea/microbiología , Regiones Promotoras Genéticas , Salmonella typhimurium/crecimiento & desarrollo , Mariscos , Animales , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Regulación Bacteriana de la Expresión Génica , Islas Genómicas/genética , Hemocitos/microbiología , Humanos , Consorcios Microbianos/fisiología , Percepción de Quorum/genética , Salmonella typhimurium/genética , Serogrupo , Transactivadores/genética , Factores de Transcripción/genética , Factores de Transcripción/metabolismo , Factores de Virulencia/genética
2.
Appl Environ Microbiol ; 82(14): 4100-4111, 2016 07 15.
Artículo en Inglés | MEDLINE | ID: mdl-27129962

RESUMEN

UNLABELLED: Recurrent outbreaks of bacterial gastroenteritis linked to the consumption of fresh fruits and vegetables highlight the paucity of understanding of the ecology of Salmonella enterica under crop production and postharvest conditions. These gaps in knowledge are due, at least in part, to the lack of suitable surrogate organisms for studies for which biosafety level 2 is problematic. Therefore, we constructed and validated an avirulent strain of Salmonella enterica serovar Typhimurium. The strain lacks major Salmonella pathogenicity islands SPI-1, SPI-2, SPI-3, SPI-4, and SPI-5 as well as the virulence plasmid pSLT. Deletions and the absence of genomic rearrangements were confirmed by genomic sequencing, and the surrogate behaved like the parental wild-type strain on selective media. A loss-of-function (phoN) selective marker allowed the differentiation of this strain from wild-type strains on a medium containing a chromogenic substrate for alkaline phosphatase. Lack of virulence was confirmed by oral infection of female BALB/c mice. The strain persisted in tomatoes, cantaloupes, leafy greens, and soil with the same kinetics as the parental wild-type and selected outbreak strains, and it reached similar final population levels. The responses of this strain to heat treatment and disinfectants were similar to those of the wild type, supporting its potential as a surrogate for future studies on the ecology and survival of Salmonella in production and processing environments. IMPORTANCE: There is significant interest in understanding the ecology of human pathogens in environments outside of their animal hosts, including the crop production environment. However, manipulative field experiments with virulent human pathogens are unlikely to receive regulatory approval due to the obvious risks. Therefore, we constructed an avirulent strain of S. enterica serovar Typhimurium and characterized it extensively.


Asunto(s)
Microbiología de Alimentos/métodos , Frutas/microbiología , Salmonella typhimurium/crecimiento & desarrollo , Salmonella typhimurium/patogenicidad , Verduras/microbiología , Animales , Modelos Animales de Enfermedad , Islas Genómicas , Ratones Endogámicos BALB C , Infecciones por Salmonella/microbiología , Infecciones por Salmonella/patología , Salmonella typhimurium/genética , Salmonella typhimurium/aislamiento & purificación , Eliminación de Secuencia , Microbiología del Suelo , Virulencia
3.
Appl Environ Microbiol ; 81(2): 640-7, 2015 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-25381244

RESUMEN

Human Vibrio infections associated with consumption of raw shellfish greatly impact the seafood industry. Vibrio cholerae-related disease is occasionally attributed to seafood, but V. vulnificus and V. parahaemolyticus are the primary targets of postharvest processing (PHP) efforts in the United States, as they pose the greatest threat to the industry. Most successful PHP treatments for Vibrio reduction also kill the molluscs and are not suitable for the lucrative half-shell market, while nonlethal practices are generally less effective. Therefore, novel intervention strategies for Vibrio reduction are needed for live oyster products. Chitosan is a bioactive derivative of chitin that is generally recognized as safe as a food additive by the FDA, and chitosan microparticles (CMs) were investigated in the present study as a potential PHP treatment for live oyster applications. Treatment of broth cultures with 0.5% (wt/vol) CMs resulted in growth cessation of V. cholerae, V. vulnificus, and V. parahaemolyticus, reducing culturable levels to nondetectable amounts after 3 h in three independent experiments. Furthermore, a similar treatment in artificial seawater at 4, 25, and 37°C reduced V. vulnificus levels by ca. 7 log CFU/ml after 24 h of exposure, but 48 h of exposure and elevated temperature were required to achieve similar results for V. parahaemolyticus and V. cholerae. Live oysters that either were artificially inoculated or contained natural populations of V. vulnificus and V. parahaemolyticus showed significant and consistent reductions following CM treatment (5%) compared to the amounts in the untreated controls. Thus, the results strongly support the promising potential for the application of CMs as a PHP treatment to reduce Vibrio spp. in intact live oysters.


Asunto(s)
Antiinfecciosos/metabolismo , Quitosano/metabolismo , Crassostrea/microbiología , Agua de Mar/microbiología , Vibrio cholerae/efectos de los fármacos , Vibrio parahaemolyticus/efectos de los fármacos , Vibrio vulnificus/efectos de los fármacos , Animales , Recuento de Colonia Microbiana , Microbiología de Alimentos/métodos , Temperatura , Factores de Tiempo , Estados Unidos , Vibrio cholerae/aislamiento & purificación , Vibrio parahaemolyticus/aislamiento & purificación , Vibrio vulnificus/aislamiento & purificación
4.
Appl Environ Microbiol ; 81(13): 4376-87, 2015 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-25911476

RESUMEN

Irrigation water has been implicated as a likely source of produce contamination by Salmonella enterica. Therefore, the distribution of S. enterica was surveyed monthly in irrigation ponds (n = 10) located within a prime agricultural region in southern Georgia and northern Florida. All ponds and 28.2% of all samples (n = 635) were positive for Salmonella, with an overall geometric mean concentration (0.26 most probable number [MPN]/liter) that was relatively low compared to prior reports for rivers in this region. Salmonella peaks were seasonal; the levels correlated with increased temperature and rainfall (P < 0.05). The numbers and occurrence were significantly higher in water (0.32 MPN/liter and 37% of samples) than in sediment (0.22 MPN/liter and 17% of samples) but did not vary with depth. Representative isolates (n = 185) from different ponds, sample types, and seasons were examined for resistance to 15 different antibiotics; most strains were resistant to streptomycin (98.9%), while 20% were multidrug resistant (MDR) for 2 to 6 antibiotics. DiversiLab repetitive extragenic palindromic-element sequence-based PCR (rep-PCR) revealed genetic diversity and showed 43 genotypes among 191 isolates, as defined by >95% similarity. The genotypes did not partition by pond, season, or sample type. Genetic similarity to known serotypes indicated Hadar, Montevideo, and Newport as the most prevalent. All ponds achieved the current safety standards for generic Escherichia coli in agricultural water, and regression modeling showed that the E. coli level was a significant predictor for the probability of Salmonella occurrence. However, persistent populations of Salmonella were widely distributed in irrigation ponds, and the associated risks for produce contamination and subsequent human exposure are unknown, supporting continued surveillance of this pathogen in agricultural settings.


Asunto(s)
Riego Agrícola , Estanques/microbiología , Salmonella enterica/aislamiento & purificación , Antibacterianos/farmacología , Carga Bacteriana , Farmacorresistencia Bacteriana , Florida , Variación Genética , Genotipo , Georgia , Pruebas de Sensibilidad Microbiana , Tipificación Molecular , Salmonella enterica/clasificación , Salmonella enterica/efectos de los fármacos , Salmonella enterica/genética , Estaciones del Año
5.
Appl Environ Microbiol ; 78(21): 7611-8, 2012 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-22923394

RESUMEN

The prevalence of Vibrio vulnificus on the external surfaces of fish from the northern Gulf of Mexico was determined in this study. A collection of 242 fish comprising 28 species was analyzed during the course of 12 sampling trips over a 16-month period. The prevalence of V. vulnificus was 37% but increased up to 69% in summer. A positive correlation was found between the percentages of V. vulnificus-positive fish and water temperatures, while salinity and V. vulnificus-positive fish prevalence were inversely correlated. A general lineal model (percent V. vulnificus-positive fish = 0.5930 - 0.02818 × salinity + 0.01406 × water temperature) was applied to best fit the data. Analysis of the population structure was carried out using 244 isolates recovered from fish. Ascription to 16S rRNA gene types indicated that 157 isolates were type A (62%), 72 (29%) were type B, and 22 (9%) were type AB. The percentage of type B isolates, considered to have greater virulence potential, was higher than that previously reported in oyster samples from the northern Gulf of Mexico. Amplified fragment length polymorphism (AFLP) was used to resolve the genetic diversity within the species. One hundred twenty-one unique AFLP profiles were found among all analyzed isolates, resulting in a calculated Simpson's index of diversity of 0.991. AFLP profiles were not grouped on the basis of collection date, fish species, temperature, or salinity, but isolates were clustered into two main groups that correlated precisely with 16S rRNA gene type. The population of V. vulnificus associated with fishes from the northern Gulf of Mexico is heterogeneous and includes strains of great virulence potential.


Asunto(s)
Peces/microbiología , Vibrio vulnificus/aislamiento & purificación , Análisis del Polimorfismo de Longitud de Fragmentos Amplificados , Animales , Genes de ARNr , Variación Genética , Golfo de México , ARN Ribosómico 16S/análisis , Salinidad , Temperatura , Vibrio vulnificus/clasificación , Vibrio vulnificus/genética , Vibrio vulnificus/patogenicidad
6.
Infect Immun ; 79(3): 1194-207, 2011 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-21199909

RESUMEN

Vibrio vulnificus is the leading cause of reported deaths from infections related to consumption of seafood in the United States. Affected predisposed individuals frequently die rapidly from sepsis. Otherwise healthy people can experience severe wound infection, which can lead to sepsis and death. A question is why, with so many people consuming contaminated raw oysters, the incidence of severe V. vulnificus disease is low. Molecular typing systems have shown associations of V. vulnificus genotypes and the environmental or clinical source of the strains, suggesting that different genotypes possess different virulence potentials. We examined 69 V. vulnificus biotype 1 strains that were genotyped by several methods and evaluated them for virulence in a subcutaneously inoculated iron dextran-treated mouse model. By examining the relationships between skin infection, systemic liver infection, and presumptive death (a decrease in body temperature), we determined that liver infection is predicated on severe skin infection and that death requires significant liver infection. Although most strains caused severe skin infection, not every strain caused systemic infection and death. Strains with polymorphisms at multiple loci (rrn, vcg, housekeeping genes, and repetitive DNA) designated profile 2 were more likely to cause lethal systemic infection with more severe indicators of virulence than were profile 1 strains with different polymorphisms at these loci. However, some profile 1 strains were lethal and some profile 2 strains did not cause systemic infection. Therefore, current genotyping schemes cannot strictly predict the virulence of V. vulnificus strains and further investigation is needed to identify virulence genes as markers of virulence.


Asunto(s)
Vibrio vulnificus/genética , Vibrio vulnificus/patogenicidad , Animales , Recuento de Colonia Microbiana , Modelos Animales de Enfermedad , Femenino , Genotipo , Complejo Hierro-Dextran , Hepatopatías/genética , Hepatopatías/microbiología , Ratones , Ratones Endogámicos ICR , Reacción en Cadena de la Polimerasa , Polimorfismo Genético , Enfermedades Cutáneas Bacterianas/genética , Enfermedades Cutáneas Bacterianas/microbiología , Vibriosis/genética , Vibriosis/microbiología , Virulencia/genética
7.
J Food Prot ; 84(12): 2092-2098, 2021 12 01.
Artículo en Inglés | MEDLINE | ID: mdl-34324675

RESUMEN

ABSTRACT: Human norovirus (HuNoV) is the leading cause of foodborne illness outbreaks and the second most common cause of waterborne infections in the United States. The goal of this research was to investigate the antiviral activity of chitosan microparticles (CMs) against HuNoV GII.4 Sydney and its cultivable surrogate Tulane virus (TuV) in suspensions mimicking fecally contaminated water. CMs were prepared by cross-linking chitosan molecules with sodium sulfate, and the antiviral activity of CMs was assessed with an infectivity assay on TuV and by quantitative reverse transcription PCR on TuV and HuNoV. A 3% CM suspension in phosphate-buffered saline (pH 7.2) bound to TuV particles but had a negligible impact on virus infectivity (P > 0.05). A 10-min contact time resulted in a 1.5-log reduction in genomic copies per mL of TuV and HuNoV in fecal suspensions (P < 0.05). Despite the negligible impact on viral infectivity, CMs can moderately bind to infectious virus particles and help purify environmental water by removing these particles. In this study, TuV was a suitable surrogate for HuNoV with similar log reductions in fecal suspension. These findings highlight the potential application of CM as a novel treatment to minimize the spread of waterborne viral pathogens.


Asunto(s)
Quitosano , Enfermedades Transmitidas por los Alimentos , Norovirus , Heces , Humanos , Norovirus/genética , Reacción en Cadena en Tiempo Real de la Polimerasa
8.
BMC Genomics ; 11: 512, 2010 Sep 24.
Artículo en Inglés | MEDLINE | ID: mdl-20863407

RESUMEN

BACKGROUND: Vibrio vulnificus is the leading cause of reported death from consumption of seafood in the United States. Despite several decades of research on molecular pathogenesis, much remains to be learned about the mechanisms of virulence of this opportunistic bacterial pathogen. The two complete and annotated genomic DNA sequences of V. vulnificus belong to strains of clade 2, which is the predominant clade among clinical strains. Clade 2 strains generally possess higher virulence potential in animal models of disease compared with clade 1, which predominates among environmental strains. SOLiD sequencing of four V. vulnificus strains representing different clades (1 and 2) and biotypes (1 and 2) was used for comparative genomic analysis. RESULTS: Greater than 4,100,000 bases were sequenced of each strain, yielding approximately 100-fold coverage for each of the four genomes. Although the read lengths of SOLiD genomic sequencing were only 35 nt, we were able to make significant conclusions about the unique and shared sequences among the genomes, including identification of single nucleotide polymorphisms. Comparative analysis of the newly sequenced genomes to the existing reference genomes enabled the identification of 3,459 core V. vulnificus genes shared among all six strains and 80 clade 2-specific genes. We identified 523,161 SNPs among the six genomes. CONCLUSIONS: We were able to glean much information about the genomic content of each strain using next generation sequencing. Flp pili, GGDEF proteins, and genomic island XII were identified as possible virulence factors because of their presence in virulent sequenced strains. Genomic comparisons also point toward the involvement of sialic acid catabolism in pathogenesis.


Asunto(s)
Genes Bacterianos/genética , Genómica/métodos , Análisis de Secuencia de ADN/métodos , Vibrio vulnificus/genética , Vibrio vulnificus/patogenicidad , Animales , Secuencia de Bases , Genotipo , Ratones , Sistemas de Lectura Abierta/genética , Fenotipo , Filogenia , Plásmidos/genética , Polimorfismo de Nucleótido Simple/genética , Estándares de Referencia , Vibrio vulnificus/clasificación , Virulencia/genética
9.
Microbiology (Reading) ; 156(Pt 12): 3722-3733, 2010 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-20817642

RESUMEN

The GacS/GacA two-component signal transduction system regulates virulence, biofilm formation and symbiosis in Vibrio species. The present study investigated this regulatory pathway in Vibrio vulnificus, a human pathogen that causes life-threatening disease associated with the consumption of raw oysters and wound infections. Small non-coding RNAs (csrB1, csrB2, csrB3 and csrC) commonly regulated by the GacS/GacA pathway were decreased (P<0.0003) in a V. vulnificus CMCP6 ΔgacA : : aph mutant compared with the wild-type parent, and expression was restored by complementation of the gacA deletion mutation in trans. Of the 20 genes examined by RT-PCR, significant reductions in the transcript levels of the mutant in comparison with the wild-type strain were observed only for genes related to motility (flaA), stationary phase (rpoS) and protease (vvpE) (P=0.04, 0.01 and 0.002, respectively). Swimming motility, flagellation and opaque colony morphology indicative of capsular polysaccharide (CPS) were unchanged in the mutant, while cytotoxicity, protease activity, CPS phase variation and the ability to acquire iron were decreased compared with the wild-type (P<0.01). The role of gacA in virulence of V. vulnificus was also demonstrated by significant impairment in the ability of the mutant strain to cause either skin (P<0.0005) or systemic infections (P<0.02) in subcutaneously inoculated, non-iron-treated mice. However, the virulence of the mutant was equivalent to that of the wild-type in iron-treated mice, demonstrating that the GacA pathway in V. vulnificus regulates the virulence of this organism in an iron-dependent manner.


Asunto(s)
Proteínas Bacterianas/metabolismo , Vibriosis/microbiología , Vibrio vulnificus/metabolismo , Vibrio vulnificus/patogenicidad , Animales , Proteínas Bacterianas/genética , Femenino , Humanos , Hierro/metabolismo , Ratones , Ratones Endogámicos ICR , Vibrio vulnificus/genética , Virulencia
10.
Appl Environ Microbiol ; 76(14): 4890-5, 2010 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-20495047

RESUMEN

Outbreaks of Vibrio vulnificus wound infections in Israel were previously attributed to tilapia aquaculture. In this study, V. vulnificus was frequently isolated from coastal but not freshwater aquaculture in Bangladesh. Phylogenetic analyses showed that strains from Bangladesh differed remarkably from isolates commonly recovered elsewhere from fish or oysters and were more closely related to strains of clinical origin.


Asunto(s)
Acuicultura , Enfermedades de los Peces/microbiología , Tilapia/microbiología , Vibriosis/veterinaria , Vibrio vulnificus/clasificación , Vibrio vulnificus/genética , Animales , Técnicas de Tipificación Bacteriana , Bangladesh , Análisis por Conglomerados , Dermatoglifia del ADN , Genotipo , Filogenia , Reacción en Cadena de la Polimerasa , Análisis de Secuencia de ADN , Vibriosis/microbiología , Vibrio vulnificus/aislamiento & purificación
11.
Environ Microbiol ; 11(8): 1934-44, 2009 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-19689704

RESUMEN

Vibrio vulnificus infections are associated with raw oyster consumption, and disease reservoirs are determined by the ability of this bacterium to infect and persist in oysters. Surface structures, such as capsular polysaccharide (CPS), pili and flagella, function as virulence factors in mouse infection models. Furthermore, virulence is related to phase variation in colony morphology, which reflects CPS expression and includes opaque (encapsulated, virulent), translucent (reduced encapsulation, avirulent) and rugose (wrinkled, biofilm-enhanced) colony types. The role of these factors in environmental survival is unknown; therefore, mutational analysis and phase variation of V. vulnificus were examined in an oyster infection model. Oysters (Crassostrea virginica) were pre-treated with tetracycline to reduce background bacteria and subsequently inoculated via filter feeding with 10(6) colony-forming units (cfu) ml(-1) of V. vulnificus wild-type strains and phase variants, as well as strains with deletion mutations in genes related to CPS (Delta wza), pili (Delta pilA), flagella (Delta flaCDE/Delta flaFBA) and motility (Delta motAB). All mutants were significantly reduced in their dissemination to oyster haemolymph as compared with wild type; however, recovery of mutants from gills and intestinal tissue was generally similar to wild type. Translucent and rugose inocula showed induction of high-frequency phase variation to the opaque encapsulated phenotype (100% and 72% respectively) during oyster infections that did not occur in strains recovered from seawater. Thus, multiple bacterial factors determine uptake of V. vulnificus in oysters, and phase variation during oyster infection is a likely mechanism for environmental survival and for induction of the more virulent phenotype.


Asunto(s)
Crassostrea/microbiología , Vibrio vulnificus/patogenicidad , Factores de Virulencia/fisiología , Animales , Cápsulas Bacterianas/genética , Cápsulas Bacterianas/aislamiento & purificación , Modelos Animales de Enfermedad , Fimbrias Bacterianas/genética , Flagelos/genética , Fenotipo , Agua de Mar/microbiología , Vibrio vulnificus/aislamiento & purificación , Factores de Virulencia/genética , Factores de Virulencia/aislamiento & purificación
12.
J Food Prot ; 68(6): 1192-7, 2005 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-15954706

RESUMEN

Vibrio vulnificus produces serious illnesses that are commonly associated with shellfish consumption, particularly raw oysters. Ingestion can result in fatal septicemia in susceptible individuals with hepatitis, cirrhosis, immune dysfunction, diabetes, or hemochromatosis (metabolic iron overload). Therefore, postharvest treatments to reduce vibrio levels in oysters have been recommended. In this study, rapid chilling by immersion of unwashed whole oysters in ice for 3 h was assessed as a postharvest treatment for reduction of V. vulnificus. Treated oysters were subsequently refrigerated at 45 degrees F (7.2 degrees C), whereas control oysters were not iced but were maintained at 45 degrees F throughout the study. Homogenized meats were monitored for total heterotrophic aerobic bacteria, V. vulnificus, and fecal coliform content before and after treatment over a 2-week period. V. vulnificus was enumerated by DNA probe hybridization of colonies from standard plate counts on nonselective medium, and recovery was compared for several media. Loss of plating efficiency was observed on standard selective and differential media compared with nonselective agars. Numbers of V. vulnificus generally declined in treated samples compared with controls; however, increases in total heterotrophic bacteria and fecal coliforms were also observed in treated samples at some time points. This study does not support the use of ice immersion as a postharvest method because of the relatively small declines in V. vulnificus numbers and the possibility of concomitant increases in fecal coliform and total bacterial contamination.


Asunto(s)
Manipulación de Alimentos/métodos , Hielo , Ostreidae/microbiología , Mariscos/microbiología , Vibrio vulnificus/crecimiento & desarrollo , Animales , Recuento de Colonia Microbiana , Contaminación de Alimentos/análisis , Contaminación de Alimentos/prevención & control , Microbiología de Alimentos , Conservación de Alimentos/métodos , Factores de Tiempo
13.
Gene ; 309(1): 1-9, 2003 Apr 24.
Artículo en Inglés | MEDLINE | ID: mdl-12727353

RESUMEN

The facultative intracellular oyster parasite, Perkinsus marinus, taxonomically related to both dinoflagellates and apicomplexans, possesses at least two distinct genes (PmSOD1 and PmSOD2) predicted to encode iron-containing superoxide dismutases (FeSOD). DNA blots and sequence analysis suggest that both PmSOD1 and PmSOD2 are single copy and are unlinked. PmSOD1 and PmSOD2 are composed of five and six exons, respectively. All introns are delimited by canonical GT/AG boundaries, and have some features more similar to apicomplexan than dinoflagellate introns. Interestingly, exon 1 of PmSOD2 encodes putative transmembrane and spacer domains with no homology to FeSODs, while exon 2 begins with a methionine codon and is homologous to the N-terminus of FeSODs. The position of introns is not highly conserved between PmSOD1 and PmSOD2, although one intron is in a similar location. Comparison of the intron positions of PmSOD1 and PmSOD2 to those of available apicomplexan FeSODs shows that the intron position shared by PmSOD1 and PmSOD2 is also observed in the FeSOD of Toxoplasma gondii. Comparison of the untranscribed regions 5' and 3' of the coding regions for PmSOD1 and PmSOD2 reveals few motifs in common. Instead, each gene possesses a distinct set of putative upstream transcription factor binding sites. Although the proteins encoded by PmSOD1 and PmSOD2 are only 38% identical to each other, homology modeling indicates that they have nearly identical active site structures. The divergent genomic organizations of two FeSOD genes in the same organism illustrates the complexity of the antioxidant system of even simple, early-branching protists such as P. marinus.


Asunto(s)
Eucariontes/genética , Superóxido Dismutasa/genética , Secuencia de Aminoácidos , Animales , Secuencia de Bases , Southern Blotting , ADN Protozoario/química , ADN Protozoario/genética , Eucariontes/enzimología , Exones , Genes/genética , Intrones , Isoenzimas/química , Isoenzimas/genética , Modelos Moleculares , Datos de Secuencia Molecular , Conformación Proteica , Análisis de Secuencia de ADN , Superóxido Dismutasa/química
14.
J Microbiol Methods ; 59(3): 301-16, 2004 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-15488274

RESUMEN

The gram-negative bacterium Vibrio vulnificus is a natural inhabitant of estuarine waters and poses a significant health threat to humans who suffer from immune disorders, liver disease, or hemochromatosis (iron overload). V. vulnificus enters human hosts via wound infections or consumption of raw shellfish (primarily oysters), and infections frequently progress to septicemia and death in susceptible individuals. Prevalence in waters and shellfish is not correlated with fecal indicator organisms; therefore, species-specific detection and enumeration of V. vulnificus in the environment has become a priority for agencies that are responsible for shellfish safety. The many selective-differential media developed for isolation of Vibrio spp., and specifically for V. vulnificus detection, are reviewed here; however, none of the media developed to date combines the sensitivity to low numbers with the specificity necessary to inhibit growth of other organisms. Therefore, immunological and molecular protocols are needed for confirmation of the identity of the organism and are discussed in detail. Methods under development that hold promise for rapid, accurate, and sensitive detection and enumeration of the organism include multiplex and real-time PCR. Developing technologies that have proven useful for detection and investigation of other pathogens such as biosensors, spectroscopy and microarrays may provide the next generation of tools for investigation of the prevalence and ecology of V. vulnificus.


Asunto(s)
Ostreidae/microbiología , Vibriosis/prevención & control , Vibrio vulnificus/aislamiento & purificación , Animales , Antígenos Bacterianos/aislamiento & purificación , Recuento de Colonia Microbiana , Medios de Cultivo , Sondas de ADN/genética , ADN Bacteriano/química , ADN Bacteriano/genética , Microbiología de Alimentos , Técnicas para Inmunoenzimas , Reacción en Cadena de la Polimerasa/métodos , Estados Unidos , United States Food and Drug Administration , Vibrio vulnificus/genética , Microbiología del Agua
15.
J Microbiol Methods ; 101: 86-92, 2014 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-24732066

RESUMEN

The 2013 Produce Safety Rules in Food Safety Modernization Act (FSMA) require regular testing for generic Escherichia coli in agricultural water intended for pre-harvest contact with the edible portion of fresh produce. However, the use of fecal contamination indicators frequently does not correctly reflect distribution of foodborne pathogens such as Salmonella enterica, and ensuring food safety may require direct detection and enumeration of pathogens in agricultural settings. Herein we report the evaluation of different cost-effective methods for quantification, isolation, and confirmation of Salmonella in irrigation pond water and sediment samples. A most probably number (MPN) dual enrichment culture method was used in combination with differential and selective agars, XLT4 and CHROMagar™ Salmonella plus (CSP). The necessity for PCR confirmation was evaluated, and methods were compared by cost and performance measures (i.e., sensitivity, specificity, positive predictive value, and negative predictive value). Statistical analyses showed that using XLT4 as the initial selective agar to isolate Salmonella colonies improved recovery compared to CSP agar; however, PCR confirmation was required to avoid false positive results on either agar. Therefore, a novel cross-streaking method utilizing CHROMagar™ agar for individual colony confirmation of Salmonella presence/absence on XLT4 was developed. This method classifies the colony as positive if typical Salmonella appearance is observed on both agars. Statistical analysis showed that this method was as effective as PCR for species confirmation of pure individual strains isolated from enrichment cultures (sensitivity=0.99, specificity=1.00, relative to PCR). This method offers a cost-effective alternative to PCR that would increase the capacity and sensitivity of Salmonella evaluation.


Asunto(s)
Riego Agrícola , Técnicas Bacteriológicas/métodos , Estanques/microbiología , Salmonella/aislamiento & purificación , Medios de Cultivo , Reacción en Cadena de la Polimerasa , Sensibilidad y Especificidad
16.
Environ Microbiol Rep ; 3(5): 543-9, 2011 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-23761333

RESUMEN

Vibrio vulnificus is a leading cause of shellfish-associated food-borne illness. US regulations stipulate shellfish processing procedures to limit V. vulnificus densities; however, the effect of these procedures on V. vulnificus strain distribution and/or genetic diversity is unknown. Vibrio vulnificus concentrations and strain diversity were analysed in various oyster tissues stored overnight at 26°C that were subsequently divided into two treatment groups: one received post-harvest processing (PHP) via individual quick freeze and one was stored on ice. Vibrio vulnificus densities were 10-fold lower in all PHP-treated tissues compared with untreated tissues. Genetic diversity of V. vulnificus was assessed by BOX-PCR genotyping and was high in all oyster tissues, but was significantly lower in untreated compared with PHP-treated oysters. BOX-PCR discriminated strains into BOX-C (clinical-associated) and BOX-E (environmental-associated) types based on a 1.1 kb DNA band, which correlated well (83% agreement) with 16S rRNA (A/B) typing. A significantly higher proportion of BOX-C isolates were recovered from PHP oysters compared with untreated oysters (24% of all isolates versus 12%) suggesting that BOX-C strains may be more resistant to treatment. These results reveal highly diverse populations of V. vulnificus in oysters with different responses to PHP, emphasizing the need to better understand the organism's ecology and population genetics to optimize food safety practices.

17.
Int J Microbiol ; 2011: 461321, 2011.
Artículo en Inglés | MEDLINE | ID: mdl-22347228

RESUMEN

The Suwannee River spans the Florida/Georgia border to the Gulf of Mexico, and contributes to regional irrigation and recreational activities. Association of Salmonella enterica with these resources may result in the contamination of produce and disease outbreaks. Therefore, surface water was examined for the distribution of S. enterica at multiple time points from 4 sites on the upper Suwannee River. Isolates were confirmed by detection of the invA gene, and 96% of all samples were positive for the bacterium. Most probable number enumeration ranged from <18 to 5400 MPN/100 mL. Genetic diversity of these isolates (n=110) was compared to other environmental (n=47) or clinical (n=28) strains and to an online library (n=314) using DiversiLab rep-PCR. All strains showed >60% similarity and distributed into 16 rep-PCR genogroups. Most (74%) of the Suwannee River isolates were clustered into two genogroups that were comprised almost exclusively (97%) of just these isolates. Conversely, 85% of the clinical reference strains clustered into other genogroups. However, some Suwannee River isolates (12%) were clustered with these primarily clinically-associated genogroups, supporting the hypothesis that river water can serve as a disease reservoir and that pathogenic strains may persist or possibly originate from environmental sources.

19.
Curr Opin Biotechnol ; 20(2): 185-90, 2009 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-19342220

RESUMEN

As the consumption of seafood and shellfish increases around the world, so is the incidence of associated outbreaks of illness. Various postharvest treatments are effective at killing seafood-associated bacteria, but most of these treatments also kill the mollusks. Because consumer preferences for raw live shellfish persist, biological approaches for promoting microbiological safety of live product are being considered. Applications of probiotic bacteria to reduce human pathogens in live shellfish could augment current practices for preharvest monitoring of water quality. Postharvest, biological controls will be important to remove shellfish-associated commensal Vibrio spp. that are pathogenic to humans. Further investigations will reveal whether combining depuration with chemical disruption of bacterial attachment or cell-to-cell signaling may accomplish this goal.


Asunto(s)
Microbiología de Alimentos , Enfermedades Transmitidas por los Alimentos/microbiología , Enfermedades Transmitidas por los Alimentos/prevención & control , Mariscos/microbiología , Animales , Bacteriófagos , Humanos , Vibrio/metabolismo , Vibrio/patogenicidad , Vibrio/virología
20.
Curr Opin Biotechnol ; 20(2): 172-7, 2009 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-19372038

RESUMEN

Recent Salmonella outbreaks associated with consumption of fresh produce have increased public concern for the safety of raw food products, perhaps signaling a paradigm shift in approaches to food safety. Limitations to our capacity to ensure that raw foods are safe for the consumer include the availability of sufficiently rapid and reliable technology for prevention, intervention, and risk assessment. Other food products, such as shellfish, with greater historical precedent for real or perceived public health risk may offer perspective and insight into strategies for meeting these challenges. This review documents current practices for pathogen prevention and detection in raw oysters and presents technological advances and impediments that determine the application of these methods.


Asunto(s)
Manipulación de Alimentos/métodos , Microbiología de Alimentos , Animales , Seguridad de Productos para el Consumidor , Brotes de Enfermedades , Industria de Procesamiento de Alimentos/normas , Enfermedades Transmitidas por los Alimentos/prevención & control , Ostreidae/microbiología
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