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1.
Proc Natl Acad Sci U S A ; 120(38): e2309632120, 2023 09 19.
Artículo en Inglés | MEDLINE | ID: mdl-37695906

RESUMEN

The ecological significance of light perception in nonphotosynthetic bacteria remains largely elusive. In terrestrial environments, diurnal oscillations in light are often temporally coupled to other environmental changes, including increased temperature and evaporation. Here, we report that light functions as an anticipatory cue that triggers protective adaptations to tolerate a future rapid loss of environmental water. We demonstrate this photo-anticipatory stress tolerance in leaf-associated Pseudomonas syringae pv. syringae (Pss) and other plant- and soil-associated pseudomonads. We found that light influences the expression of 30% of the Pss genome, indicating that light is a global regulatory signal, and this signaling occurs almost entirely via a bacteriophytochrome photoreceptor that senses red, far-red, and blue wavelengths. Bacteriophytochrome-mediated light control disproportionally up-regulates water-stress adaptation functions and confers enhanced fitness when cells encounter light prior to water limitation. Given the rapid speed at which water can evaporate from leaf surfaces, such anticipatory activation of a protective response enhances fitness beyond that of a reactive stress response alone, with recurring diurnal wet-dry cycles likely further amplifying the fitness advantage over time. These findings demonstrate that nonphotosynthetic bacteria can use light as a cue to mount an adaptive anticipatory response against a physiologically unrelated but ecologically coupled stress.


Asunto(s)
Señales (Psicología) , Agua , Humanos , Bacterias , Deshidratación , Aclimatación
2.
Proc Natl Acad Sci U S A ; 120(44): e2310600120, 2023 Oct 31.
Artículo en Inglés | MEDLINE | ID: mdl-37871207

RESUMEN

Light perception for orientation in zoospore-forming fungi is linked to homo- or heterodimeric rhodopsin-guanylyl cyclases (RGCs). Heterodimeric RGCs, first identified in the chytrid Rhizoclosmatium globosum, consist of an unusual near-infrared absorbing highly fluorescent sensitizer neorhodopsin (NeoR) that is paired with a visual light-absorbing rhodopsin responsible for enzyme activation. Here, we present a comprehensive analysis of the distribution of RGC genes in early-branching fungi using currently available genetic data. Among the characterized RGCs, we identified red-sensitive homodimeric RGC variants with maximal light activation close to 600 nm, which allow for red-light control of GTP to cGMP conversion in mammalian cells. Heterodimeric RGC complexes have evolved due to a single gene duplication within the branching of Chytridiales and show a spectral range for maximal light activation between 480 to 600 nm. In contrast, the spectral sensitivity of NeoRs is reaching into the near-infrared range with maximal absorption between 641 and 721 nm, setting the low energy spectral edge of rhodopsins so far. Based on natural NeoR variants and mutational studies, we reevaluated the role of the counterion-triad proposed to cause the extreme redshift. With the help of chimera constructs, we disclose that the cyclase domain is crucial for functioning as homo- or heterodimers, which enables the adaptation of the spectral sensitivity by modular exchange of the photosensor. The extreme spectral plasticity of retinal chromophores in native photoreceptors provides broad perspectives on the achievable spectral adaptation for rhodopsin-based molecular tools ranging from UVB into the near-infrared.


Asunto(s)
Retina , Rodopsina , Animales , Rodopsina/genética , Células Fotorreceptoras , Luz , Guanilato Ciclasa/genética , Mamíferos
3.
J Biol Chem ; 300(5): 107238, 2024 May.
Artículo en Inglés | MEDLINE | ID: mdl-38552736

RESUMEN

Light and temperature sensing are important features of many organisms. Light may provide energy but may also be used by non-photosynthetic organisms for orientation in the environment. Recent evidence suggests that plant and fungal phytochrome and plant phototropin serve dual functions as light and temperature sensors. Here we characterized the fungal LOV-domain blue-light receptor LreA of Alternaria alternata and show that it predominantly contains FAD as chromophore. Blue-light illumination induced ROS production followed by protein agglomeration in vitro. In vivo ROS may control LreA activity. LreA acts as a blue-light photoreceptor but also triggers temperature-shift-induced gene expression. Both responses required the conserved amino acid cysteine 421. We therefore propose that temperature mimics the photoresponse, which could be the ancient function of the chromoprotein. Temperature-dependent gene expression control with LreA was distinct from the response with phytochrome suggesting fine-tuned, photoreceptor-specific gene regulation.


Asunto(s)
Alternaria , Luz Azul , Flavina-Adenina Dinucleótido , Proteínas Fúngicas , Fotorreceptores Microbianos , Alternaria/metabolismo , Flavina-Adenina Dinucleótido/metabolismo , Flavina-Adenina Dinucleótido/química , Proteínas Fúngicas/metabolismo , Proteínas Fúngicas/genética , Proteínas Fúngicas/química , Regulación Fúngica de la Expresión Génica , Fotorreceptores Microbianos/metabolismo , Fotorreceptores Microbianos/química , Fotorreceptores Microbianos/genética , Fitocromo/metabolismo , Fitocromo/química , Fitocromo/genética , Dominios Proteicos , Especies Reactivas de Oxígeno/metabolismo , Temperatura
4.
Proc Natl Acad Sci U S A ; 118(20)2021 05 18.
Artículo en Inglés | MEDLINE | ID: mdl-33941643

RESUMEN

The ability to respond to light has profoundly shaped life. Animals with eyes overwhelmingly rely on their visual circuits for mediating light-induced coordinated movements. Building on previously reported behaviors, we report the discovery of an organized, eye-independent (extraocular), body-wide photosensory framework that allows even a head-removed animal to move like an intact animal. Despite possessing sensitive cerebral eyes and a centralized brain that controls most behaviors, head-removed planarians show acute, coordinated ultraviolet-A (UV-A) aversive phototaxis. We find this eye-brain-independent phototaxis is mediated by two noncanonical rhabdomeric opsins, the first known function for this newly classified opsin-clade. We uncover a unique array of dual-opsin-expressing photoreceptor cells that line the periphery of animal body, are proximal to a body-wide nerve net, and mediate UV-A phototaxis by engaging multiple modes of locomotion. Unlike embryonically developing cerebral eyes that are functional when animals hatch, the body-wide photosensory array matures postembryonically in "adult-like animals." Notably, apart from head-removed phototaxis, the body-wide, extraocular sensory organization also impacts physiology of intact animals. Low-dose UV-A, but not visible light (ocular-stimulus), is able to arouse intact worms that have naturally cycled to an inactive/rest-like state. This wavelength selective, low-light arousal of resting animals is noncanonical-opsin dependent but eye independent. Our discovery of an autonomous, multifunctional, late-maturing, organized body-wide photosensory system establishes a paradigm in sensory biology and evolution of light sensing.


Asunto(s)
Encéfalo/metabolismo , Ojo/metabolismo , Proteínas del Helminto/genética , Opsinas/genética , Células Fotorreceptoras de Invertebrados/metabolismo , Planarias/genética , Animales , Nivel de Alerta/genética , Nivel de Alerta/fisiología , Nivel de Alerta/efectos de la radiación , Encéfalo/crecimiento & desarrollo , Ojo/crecimiento & desarrollo , Perfilación de la Expresión Génica/métodos , Regulación del Desarrollo de la Expresión Génica , Proteínas del Helminto/clasificación , Proteínas del Helminto/metabolismo , Hibridación Fluorescente in Situ/métodos , Locomoción/genética , Locomoción/fisiología , Locomoción/efectos de la radiación , Movimiento/fisiología , Movimiento/efectos de la radiación , Opsinas/clasificación , Opsinas/metabolismo , Filogenia , Planarias/crecimiento & desarrollo , Planarias/metabolismo , Interferencia de ARN , Rayos Ultravioleta
5.
Proc Natl Acad Sci U S A ; 118(12)2021 03 23.
Artículo en Inglés | MEDLINE | ID: mdl-33727422

RESUMEN

Cyanobacteriochromes (CBCRs) are small, linear tetrapyrrole (bilin)-binding photoreceptors in the phytochrome superfamily that regulate diverse light-mediated adaptive processes in cyanobacteria. More spectrally diverse than canonical red/far-red-sensing phytochromes, CBCRs were thought to be restricted to sensing visible and near UV light until recently when several subfamilies with far-red-sensing representatives (frCBCRs) were discovered. Two of these frCBCRs subfamilies have been shown to incorporate bilin precursors with larger pi-conjugated chromophores, while the third frCBCR subfamily uses the same phycocyanobilin precursor found in the bulk of the known CBCRs. To elucidate the molecular basis of far-red light perception by this third frCBCR subfamily, we determined the crystal structure of the far-red-absorbing dark state of one such frCBCR Anacy_2551g3 from Anabaena cylindrica PCC 7122 which exhibits a reversible far-red/orange photocycle. Determined by room temperature serial crystallography and cryocrystallography, the refined 2.7-Å structure reveals an unusual all-Z,syn configuration of the phycocyanobilin (PCB) chromophore that is considerably less extended than those of previously characterized red-light sensors in the phytochrome superfamily. Based on structural and spectroscopic comparisons with other bilin-binding proteins together with site-directed mutagenesis data, our studies reveal protein-chromophore interactions that are critical for the atypical bathochromic shift. Based on these analyses, we propose that far-red absorption in Anacy_2551g3 is the result of the additive effect of two distinct red-shift mechanisms involving cationic bilin lactim tautomers stabilized by a constrained all-Z,syn conformation and specific interactions with a highly conserved anionic residue.


Asunto(s)
Pigmentos Biliares/química , Pigmentos Biliares/metabolismo , Cianobacterias/fisiología , Modelos Moleculares , Fitocromo/química , Fitocromo/metabolismo , Conformación Proteica , Luz , Optogenética , Relación Estructura-Actividad , Rayos Ultravioleta
6.
Sensors (Basel) ; 24(12)2024 Jun 14.
Artículo en Inglés | MEDLINE | ID: mdl-38931626

RESUMEN

This study introduces a flexible and low-cost solution for a source measure unit (SMU), which is presented as an alternative to conventional source meter units and a blueprint for sensor FET drivers. An SMU collects current-voltage (I-V) curves with an additional variable voltage or current and is commonly used to characterize semiconductors. We present the hardware design, interfacing, and test results of our SMU. Specifically, we present representative I-V curve measurements for graphene-channel FETs to demonstrate the SMU's capability to efficiently characterize these devices with minimal noise and sufficient accuracy. This cost-effective solution presents a promising avenue for researchers and developers seeking reliable tools for sensor development and characterization. We demonstrate, with the example of surface illumination, how the sensing behavior of graphene-channel FETs can be characterized without the need for expensive equipment. Additionally, the SMU was validated with known passive and active components, along with probe station integration for semiconductor die-scale connection. The SMU's focus on collecting I-V curves, coupled with its ability to identify device defects, such as parasitic Schottky junctions or a failed oxide, contributes to its utility in quality testing for semiconductor devices. Its low-cost nature makes it accessible for various research endeavors, enabling efficient data collection and analysis for graphene-based and other nanomaterial-based sensor applications.

7.
Macromol Rapid Commun ; 44(8): e2200928, 2023 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-36786588

RESUMEN

In recent years, hydrogels have attracted extensive attention in smart sensing owing to their biocompatibility and high elasticity. However, it is still a challenge to develop hydrogels with excellent multiple responsiveness for smart wearable sensors. In this paper, a facile synthesis of carbon quantum dots (CQDs)-doped cross-linked chitosan quaternary/carboxymethylcellulose hydrogels (CCCDs) is presented. Designing of dual network hydrogels decorated with CQDs provides abundant crosslinking and improves the mechanical properties of the hydrogels. The hydrogel-based strain sensor exhibits excellent sensitivity (gauge factor: 9.88), linearity (R2 : 0.97), stretchable ability (stress: 0.67 MPa; strain: 404%), good cyclicity, and durability. The luminescent properties are endowed by the CQDs further broaden the application of hydrogels for realizing flexible electronics. More interestingly, the strain sensor based on CCCDs hydrogel demonstrates photo responsiveness (ΔR/R0 ≈20%) and pH responsiveness (pH range ≈4-7) performance. CCCDs hydrogels can be used for gesture recognition and light sensing switch. As a proof-of-concept, a smart wearable sensor is designed for monitoring human activities and detecting pH variation in human sweat during exercise. This study reveals new possibilities for further applications in wearable health monitoring.


Asunto(s)
Quitosano , Puntos Cuánticos , Dispositivos Electrónicos Vestibles , Humanos , Carbono , Hidrogeles , Concentración de Iones de Hidrógeno , Conductividad Eléctrica
8.
Sensors (Basel) ; 23(4)2023 Feb 04.
Artículo en Inglés | MEDLINE | ID: mdl-36850358

RESUMEN

In this study we analyzed the structure and light-sensing properties of as-deposited vanadium oxide thin films, prepared by RF sputtering in different Ar:O2 flow rate conditions, at low temperature (e.g., 65 °C). X-ray diffraction (XRD), Scanning Electron Microscopy (SEM-EDX), Raman spectroscopy and X-ray photoelectron spectroscopy (XPS) were employed to analyze the film microstructure, composition and the oxidation states of vanadium ions. The SEM micrographs evidence VxOy films with smooth surfaces, whereas the XRD patterns show their amorphous structure. Raman spectra indicate an increased structural disorder in the films deposited in Ar:O2 flow comparatively with those deposited solely in Ar flow. The XPS data suggest the modification of the oxidation state from V4+ to V5+, thus proving the formation of the V2O5 phase when increasing the oxygen content, which further affects the films' optical properties. We observed a good stability of the photogenerated current in Si/SiO2/VxOy/TiN heterostructures upon excitation with pulses of UV (360 nm), VIS (white light) and NIR (860 nm) light. The responsivity, detectivity and linear dynamic range parameters increase with the O/V ratio in the VxOy films, reaching comparable values with photodetectors based on crystalline V2O5 or VO2.

9.
Sensors (Basel) ; 23(4)2023 Feb 17.
Artículo en Inglés | MEDLINE | ID: mdl-36850853

RESUMEN

Virtual sensing technology uses mathematical calculations instead of natural measurements when the latter are too difficult or expensive. Nowadays, application of virtual light sensing technology becomes almost mandatory for daylight analysis at the stage of architectural project development. Daylight Autonomy metrics should be calculated multiple times during the project. A properly designed building can reduce the necessity of artificial lighting, thus saving energy. There are two main daylight performance metrics: Spatial Daylight Autonomy (sDA) and Annual Sunlight Exposure (ASE). To obtain their values, we have to simulate global illumination for every hour of the year. A light simulation method should therefore be as efficient as possible for processing complex building models. In this paper we present a method for fast calculation of Daylight Autonomy metrics, allowing them to be calculated within a reasonable timescale. We compared our method with straightforward calculations and other existing solutions. This comparison demonstrates good agreement; this proves sufficient accuracy and higher efficiency of the method. Our method also contains an original algorithm for the automatic setting of the sensing area. The sDA metric is calculated considering blinds control, which should open or close them depending on overexposure to direct sunlight. Thus, we developed an optimization procedure to determine the blinds configuration at any time.

10.
Appl Microbiol Biotechnol ; 106(11): 3895-3912, 2022 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-35599256

RESUMEN

While phototoxicity can be a useful therapeutic modality not only for eliminating malignant cells but also in treating fungal infections, mycologists aiming to observe morphological changes or molecular events in fungi, especially when long observation periods or high light fluxes are warranted, encounter problems owed to altered regulatory pathways or even cell death caused by various photosensing mechanisms. Consequently, the ever expanding repertoire of visible fluorescent protein toolboxes and high-resolution microscopy methods designed to investigate fungi in vitro and in vivo need to comply with an additional requirement: to decrease the unwanted side effects of illumination. In addition to optimizing exposure, an obvious solution is red-shifted illumination, which, however, does not come without compromises. This review summarizes the interactions of fungi with light and the various molecular biology and technology approaches developed for exploring their functions on the molecular, cellular, and in vivo microscopic levels, and outlines the progress towards reducing phototoxicity through applying far-red and near-infrared light. KEY POINTS: • Fungal biological processes alter upon illumination, also under the microscope • Red shifted fluorescent protein toolboxes decrease interference by illumination • Innovations like two-photon, lightsheet, and near IR microscopy reduce phototoxicity.


Asunto(s)
Luz , Fotones , Colorantes , Hongos , Microscopía Fluorescente/métodos
11.
Sensors (Basel) ; 23(1)2022 Dec 23.
Artículo en Inglés | MEDLINE | ID: mdl-36616729

RESUMEN

The rapid development of microsystems technology with the availability of various machine learning algorithms facilitates human activity recognition (HAR) and localization by low-cost and low-complexity systems in various applications related to industry 4.0, healthcare, ambient assisted living as well as tracking and navigation tasks. Previous work, which provided a spatiotemporal framework for HAR by fusing sensor data generated from an inertial measurement unit (IMU) with data obtained by an RGB photodiode for visible light sensing (VLS), already demonstrated promising results for real-time HAR and room identification. Based on these results, we extended the system by applying feature extraction methods of the time and frequency domain to improve considerably the correct determination of common human activities in industrial scenarios in combination with room localization. This increases the correct detection of activities to over 90% accuracy. Furthermore, it is demonstrated that this solution is applicable to real-world operating conditions in ambient light.


Asunto(s)
Inteligencia Ambiental , Actividades Humanas , Humanos , Algoritmos , Aprendizaje Automático
12.
Sensors (Basel) ; 22(13)2022 Jun 24.
Artículo en Inglés | MEDLINE | ID: mdl-35808279

RESUMEN

Radio frequency identification (RFID) represents an emerging platform for passive RF-powered wireless sensing. Differential Multi-port RFID systems are widely used to enable multiple independent measurands to be gathered, or to overcome channel variations. This paper presents a dual-port/dual-integrated circuit (IC) RFID sensing tag based on a shared aperture dual-polarized microstrip antenna. The tag can be loaded with different sensors where the received signal strength indicator (RSSI) of one IC is modulated using a sensor, and the other acts as a measurand-insensitive reference, for differential sensing. The 868 MHz tag maintains a minimum unloaded read range of 14 m insensitive to deployment on metals or lossy objects, which represents the longest reported range of a multi-port RFID sensing tag. The tag is loaded with a light-dependent resistor (LDR) to demonstrate its functionality as a battery-less wireless RFID light sensor. Following detailed RF characterization of the LDR, it is shown that the impedance, and consequently the RSSI, of the sensing tag are modulated by changing the light intensity, whereas the reference port maintains a mostly unchanged response for a correlated channel. The proposed tag shows the potential for channel variations-tolerant differential RFID sensing platforms based on polarization-diversity antennas.

13.
J Biol Chem ; 295(19): 6498-6508, 2020 05 08.
Artículo en Inglés | MEDLINE | ID: mdl-32238431

RESUMEN

Arrestin-1 is the arrestin family member responsible for inactivation of the G protein-coupled receptor rhodopsin in photoreceptors. Arrestin-1 is also well-known to interact with additional protein partners and to affect other signaling cascades beyond phototransduction. In this study, we investigated one of these alternative arrestin-1 binding partners, the glycolysis enzyme enolase-1, to map the molecular contact sites between these two proteins and investigate how the binding of arrestin-1 affects the catalytic activity of enolase-1. Using fluorescence quench protection of strategically placed fluorophores on the arrestin-1 surface, we observed that arrestin-1 primarily engages enolase-1 along a surface that is opposite of the side of arrestin-1 that binds photoactivated rhodopsin. Using this information, we developed a molecular model of the arrestin-1-enolase-1 complex, which was validated by targeted substitutions of charge-pair interactions. Finally, we identified the likely source of arrestin's modulation of enolase-1 catalysis, showing that selective substitution of two amino acids in arrestin-1 can completely remove its effect on enolase-1 activity while still remaining bound to enolase-1. These findings open up opportunities for examining the functional effects of arrestin-1 on enolase-1 activity in photoreceptors and their surrounding cells.


Asunto(s)
Arrestina/química , Biomarcadores de Tumor/química , Proteínas de Unión al ADN/química , Modelos Moleculares , Complejos Multienzimáticos/química , Fosfopiruvato Hidratasa/química , Rodopsina/química , Proteínas Supresoras de Tumor/química , Arrestina/genética , Sitios de Unión , Biomarcadores de Tumor/genética , Catálisis , Proteínas de Unión al ADN/genética , Humanos , Complejos Multienzimáticos/genética , Fosfopiruvato Hidratasa/genética , Rodopsina/genética , Proteínas Supresoras de Tumor/genética
14.
Genomics ; 112(2): 1707-1715, 2020 03.
Artículo en Inglés | MEDLINE | ID: mdl-31639443

RESUMEN

Light plays an important role in pileus differentiation in Pleurotus eryngii cultivation, and pileus morphology is influenced by light quality. To understand the effects of light quality on pileus morphology at the transcriptional level, we performed a comparative transcriptomic analysis of pilei grown under blue and red light irradiation. We identified 3959 differentially expressed genes (DEGs) between the blue and red light-treated pilei, which included 1664 up-regulated and 2295 down-regulated genes. These DEGs were significantly associated with light sensing, signal transduction, cell wall degradation and melanogenesis, suggesting that these processes are involved in pileus morphogenesis. Multiple DEGs related to respiratory functions were differentially expressed, suggesting that respiratory activity increased during pileus development regardless of light quality. These results provide a valuable view of the transcriptional changes and molecular processes involved in pileus morphogenesis under different light conditions and provide a foundation for yield improvement and quality control of P. eryngii.


Asunto(s)
Regulación Fúngica de la Expresión Génica , Morfogénesis , Pleurotus/genética , Transcriptoma , Luz , Melaninas/biosíntesis , Pleurotus/crecimiento & desarrollo , Pleurotus/metabolismo , Pleurotus/efectos de la radiación
15.
Int J Mol Sci ; 22(19)2021 Sep 28.
Artículo en Inglés | MEDLINE | ID: mdl-34638788

RESUMEN

Antimicrobial resistance is a global, mounting and dynamic issue that poses an immediate threat to human, animal, and environmental health. Among the alternative antimicrobial treatments proposed to reduce the external use of antibiotics is electromagnetic radiation, such as blue light. The prevailing mechanistic model is that blue light can be absorbed by endogenous porphyrins within the bacterial cell, inducing the production of reactive oxygen species, which subsequently inflict oxidative damages upon different cellular components. Nevertheless, it is unclear whether other mechanisms are involved, particularly those that can affect the efficacy of antimicrobial blue light treatments. In this review, we summarize evidence of inherent factors that may confer protection to a selected group of bacteria against blue light-induced oxidative damages or modulate the physiological characteristics of the treated bacteria, such as virulence and motility. These include descriptions of three major photoreceptors in bacteria, chemoreceptors, SOS-dependent DNA repair and non-SOS protective mechanisms. Future directions are also provided to assist with research efforts to increase the efficacy of antimicrobial blue light and to minimize the development of blue light-tolerant phenotypes.


Asunto(s)
Bacterias/genética , Reparación del ADN , Regulación Bacteriana de la Expresión Génica , Luz , Fototerapia , Bacterias/efectos de la radiación
16.
Sensors (Basel) ; 20(7)2020 Mar 29.
Artículo en Inglés | MEDLINE | ID: mdl-32235403

RESUMEN

This paper experimentally investigates passive human visible light sensing (VLS). A passive VLS system is tested consisting of one light emitting diode (LED) and one photodiode-based receiver, both ceiling-mounted. There is no line of sight between the LED and the receiver, so only reflected light can be considered. The influence of a human is investigated based on the received signal strength (RSS) values of the reflections of ambient light at the photodiode. Depending on the situation, this influence can reach up to ± 50 % . The experimental results show the influence of three various clothing colors, four different walking directions and four different layouts. Based on the obtained results, a human pass-by detection system is proposed and tested. The system achieves a detection rate of 100% in a controlled environment for 21 experiments. For a realistic corridor experiment, the system keeps its detection rate of 100% for 19 experiments.


Asunto(s)
Técnicas Biosensibles/instrumentación , Percepción de Movimiento , Movimiento (Física) , Humanos , Luz
17.
BMC Genomics ; 20(1): 121, 2019 Feb 08.
Artículo en Inglés | MEDLINE | ID: mdl-30736734

RESUMEN

BACKGROUND: Lentinula edodes is one of the most popular edible mushroom species in the world and contains useful medicinal components, such as lentinan. The light-induced formation of brown film on the vegetative mycelial tissues of L. edodes is an important process for ensuring the quantity and quality of this edible mushroom. To understand the molecular mechanisms underlying this critical developmental process in L. edodes, we characterized the morphological phenotypic changes in a strain, Chamaram, associated with abnormal brown film formation and compared its genome-wide transcriptional features. RESULTS: In the present study, we performed genome-wide transcriptome analyses of different vegetative mycelium growth phenotypes, namely, early white, normal brown, and defective dark yellow partial brown films phenotypes which were exposed to different light conditions. The analysis revealed the identification of clusters of genes specific to the light-induced brown film phenotypes. These genes were significantly associated with light sensing via photoreceptors such as FMN- and FAD-bindings, signal transduction by kinases and GPCRs, melanogenesis via activation of tyrosinases, and cell wall degradation by glucanases, chitinases, and laccases, which suggests these processes are involved in the formation of mycelial browning in L. edodes. Interestingly, hydrophobin genes such as SC1 and SC3 exhibited divergent expression levels in the normal and abnormal brown mycelial films, indicating the ability of these genes to act in fruiting body initiation and formation of dikaryotic mycelia. Furthermore, we identified the up-regulation of glycoside hydrolase domain-containing genes in the normal brown film but not in the abnormal film phenotype, suggesting that cell wall degradation in the normal brown film phenotype is crucial in the developmental processes related to the initiation and formation of fruiting bodies. CONCLUSIONS: This study systematically analysed the expression patterns of light-induced browning-related genes in L. edodes. Our findings provide information for further investigations of browning formation mechanisms in L. edodes and a foundation for future L. edodes breeding.


Asunto(s)
Perfilación de la Expresión Génica , Lentinula/genética , Lentinula/metabolismo , Micelio/genética , Micelio/metabolismo , Pigmentación/genética , Genes Fúngicos/genética , Lentinula/efectos de la radiación , Luz , Micelio/efectos de la radiación , Fenotipo , Pigmentación/efectos de la radiación
18.
Microbiology (Reading) ; 165(8): 819-833, 2019 08.
Artículo en Inglés | MEDLINE | ID: mdl-31107205

RESUMEN

In contrast to obligate intracellular pathogens that can remain in relatively stable host-associated environments, the soil-living bacterial pathogen Listeria monocytogenes has to sense and respond to physical and chemical cues in a variety of quite different niches. In particular, the bacterium has to survive the dramatic transition from its saprophytic existence to life within the host where nutritional stress, increased temperature, acidity, osmotic stress and the host defences present a new and challenging landscape. This review focuses on the σB and PrfA regulatory systems used by L. monocytogenes to sense the changing environment and implement survival mechanisms that help to overcome the disparate conditions within the host, but also to switch from a harmless saprophyte to an impressively effective pathogen.


Asunto(s)
Proteínas Bacterianas/metabolismo , Listeria monocytogenes/patogenicidad , Factores de Terminación de Péptidos/metabolismo , Factor sigma/metabolismo , Factores de Virulencia/genética , Virulencia/genética , Proteínas Bacterianas/genética , Regulación Bacteriana de la Expresión Génica , Fototransducción/genética , Listeria monocytogenes/genética , Listeriosis , Factores de Terminación de Péptidos/genética , Factor sigma/genética , Factores de Virulencia/metabolismo
19.
Proc Natl Acad Sci U S A ; 113(36): 10073-8, 2016 09 06.
Artículo en Inglés | MEDLINE | ID: mdl-27551082

RESUMEN

Cryptochrome (CRY) is the principal light sensor of the insect circadian clock. Photoreduction of the Drosophila CRY (dCRY) flavin cofactor to the anionic semiquinone (ASQ) restructures a C-terminal tail helix (CTT) that otherwise inhibits interactions with targets that include the clock protein Timeless (TIM). All-atom molecular dynamics (MD) simulations indicate that flavin reduction destabilizes the CTT, which undergoes large-scale conformational changes (the CTT release) on short (25 ns) timescales. The CTT release correlates with the conformation and protonation state of conserved His378, which resides between the CTT and the flavin cofactor. Poisson-Boltzmann calculations indicate that flavin reduction substantially increases the His378 pKa Consistent with coupling between ASQ formation and His378 protonation, dCRY displays reduced photoreduction rates with increasing pH; however, His378Asn/Arg variants show no such pH dependence. Replica-exchange MD simulations also support CTT release mediated by changes in His378 hydrogen bonding and verify other responsive regions of the protein previously identified by proteolytic sensitivity assays. His378 dCRY variants show varying abilities to light-activate TIM and undergo self-degradation in cellular assays. Surprisingly, His378Arg/Lys variants do not degrade in light despite maintaining reactivity toward TIM, thereby implicating different conformational responses in these two functions. Thus, the dCRY photosensory mechanism involves flavin photoreduction coupled to protonation of His378, whose perturbed hydrogen-bonding pattern alters the CTT and surrounding regions.


Asunto(s)
Relojes Circadianos/genética , Criptocromos/química , Proteínas de Drosophila/química , Proteínas de Drosophila/genética , Drosophila melanogaster/genética , Proteínas del Ojo/química , Histidina/química , Protones , Secuencias de Aminoácidos , Animales , Benzoquinonas/química , Benzoquinonas/metabolismo , Dominio Catalítico , Criptocromos/genética , Criptocromos/metabolismo , Cristalografía por Rayos X , Proteínas de Drosophila/metabolismo , Drosophila melanogaster/metabolismo , Proteínas del Ojo/genética , Proteínas del Ojo/metabolismo , Flavinas/química , Flavinas/metabolismo , Expresión Génica , Histidina/metabolismo , Enlace de Hidrógeno , Concentración de Iones de Hidrógeno , Luz , Simulación de Dinámica Molecular , Oxidación-Reducción , Unión Proteica , Conformación Proteica en Hélice alfa , Conformación Proteica en Lámina beta , Dominios y Motivos de Interacción de Proteínas , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo
20.
Proc Natl Acad Sci U S A ; 112(26): 8082-7, 2015 Jun 30.
Artículo en Inglés | MEDLINE | ID: mdl-26080423

RESUMEN

Cyanobacteriochromes (CBCRs) are cyanobacterial photoreceptors that have diverse spectral properties and domain compositions. Although large numbers of CBCR genes exist in cyanobacterial genomes, no studies have assessed whether multiple CBCRs work together. We recently showed that the diguanylate cyclase (DGC) activity of the CBCR SesA from Thermosynechococcus elongatus is activated by blue-light irradiation and that, when irradiated, SesA, via its product cyclic dimeric GMP (c-di-GMP), induces aggregation of Thermosynechococcus vulcanus cells at a temperature that is suboptimum for single-cell viability. For this report, we first characterize the photobiochemical properties of two additional CBCRs, SesB and SesC. Blue/teal light-responsive SesB has only c-di-GMP phosphodiesterase (PDE) activity, which is up-regulated by teal light and GTP. Blue/green light-responsive SesC has DGC and PDE activities. Its DGC activity is enhanced by blue light, whereas its PDE activity is enhanced by green light. A ΔsesB mutant cannot suppress cell aggregation under teal-green light. A ΔsesC mutant shows a less sensitive cell-aggregation response to ambient light. ΔsesA/ΔsesB/ΔsesC shows partial cell aggregation, which is accompanied by the loss of color dependency, implying that a nonphotoresponsive DGC(s) producing c-di-GMP can also induce the aggregation. The results suggest that SesB enhances the light color dependency of cell aggregation by degrading c-di-GMP, is particularly effective under teal light, and, therefore, seems to counteract the induction of cell aggregation by SesA. In addition, SesC seems to improve signaling specificity as an auxiliary backup to SesA/SesB activities. The coordinated action of these three CBCRs highlights why so many different CBCRs exist.


Asunto(s)
Color , GMP Cíclico/análogos & derivados , Luz , Fotorreceptores Microbianos/fisiología , Transducción de Señal , Synechococcus/fisiología , GMP Cíclico/metabolismo , Mutación Puntual , Synechococcus/genética
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