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1.
World J Microbiol Biotechnol ; 38(11): 199, 2022 Aug 23.
Artículo en Inglés | MEDLINE | ID: mdl-35996038

RESUMEN

As an important glycosaminoglycan hydrolase, chondroitin lyases can hydrolyze chondroitin sulfate (CS) and release disaccharides and oligosaccharides. They are further divided into chondroitin AC, ABC, and B lyases according to their spatial structure and substrate specificity. Chondroitin AC lyase can hydrolyze chondroitin sulfate A (CS-A), chondroitin sulfate C (CS-C), and hyaluronic acid (HA), making it an essential biocatalyst for the preparation of low molecular weight chondroitin sulfate, analysis of the structure of the chondroitin sulfate, treatment of spinal cord injury, and purification of heparin. This paper provides an overview of reported chondroitin AC lyases, including their properties and the challenges faced in industrial applications. Up to now, although many attempts have been adopted to improve the enzyme properties, the most important factors are still the low activity and stability. The relations between the stability of the enzyme and the spatial structure were also summarized and discussed. Also perspectives for remodeling the enzymes with protein engineering are included.


Asunto(s)
Sulfatos de Condroitina , Liasas , Condroitín Liasas/química , Condroitín Liasas/metabolismo , Sulfatos de Condroitina/química , Sulfatos de Condroitina/metabolismo , Ácido Hialurónico/química , Ácido Hialurónico/metabolismo , Liasas/metabolismo , Especificidad por Sustrato
2.
Mar Drugs ; 17(12)2019 Dec 02.
Artículo en Inglés | MEDLINE | ID: mdl-31810166

RESUMEN

Glycosaminoglycan (GAG) lyase is an effective tool for the structural and functional studies of glycosaminoglycans and preparation of functional oligosaccharides. A new GAG lyase from Microbacterium sp. H14 was cloned, expressed, purified, and characterized, with a molecular weight of approximately 85.9 kDa. The deduced lyase HCLaseM belonged to the polysaccharide lyase (PL) family 8. Based on the phylogenetic tree, HCLaseM could not be classified into the existing three subfamilies of this family. HCLaseM showed almost the same enzyme activity towards hyaluronan (HA), chondroitin sulfate A (CS-A), CS-B, CS-C, and CS-D, which was different from reported GAG lyases. HCLaseM exhibited the highest activities to both HA and CS-A at its optimal temperature (35 °C) and pH (pH 7.0). HCLaseM was stable in the range of pH 5.0-8.0 and temperature below 30 °C. The enzyme activity was independent of divalent metal ions and was not obviously affected by most metal ions. HCLaseM is an endo-type enzyme yielding unsaturated disaccharides as the end products. The facilitated diffusion effect of HCLaseM is dose-dependent in animal experiments. These properties make it a candidate for further basic research and application.


Asunto(s)
Actinomycetales/enzimología , Condroitín Liasas/química , Glicosaminoglicanos/química , Oligosacáridos/química , Animales , Clonación Molecular , Femenino , Concentración de Iones de Hidrógeno , Iones/química , Ratones , Filogenia , Polisacárido Liasas/química , Temperatura
3.
Mar Drugs ; 17(3)2019 Mar 20.
Artículo en Inglés | MEDLINE | ID: mdl-30897810

RESUMEN

Chondroitinase (ChSase), a type of glycosaminoglycan (GAG) lyase, can degrade chondroitin sulfate (CS) to unsaturate oligosaccharides, with various functional activities. In this study, ChSase AC II from a newly isolated marine bacterium Arthrobacter sp. CS01 was cloned, expressed in Pichia pastoris X33, purified, and characterized. ChSase AC II, with a molecular weight of approximately 100 kDa and a specific activity of 18.7 U/mg, showed the highest activity at 37 °C and pH 6.5 and maintained stability at a broad range of pH (5⁻7.5) and temperature (below 35 °C). The enzyme activity was increased in the presence of Mn2+ and was strongly inhibited by Hg2+. Moreover, the kinetic parameters of ChSase AC II against CS-A, CS-C, and HA were determined. TLC and ESI-MS analysis of the degradation products indicated that ChSase AC II displayed an exolytic action mode and completely hydrolyzed three substrates into oligosaccharides with low degrees of polymerization (DPs). All these features make ChSase AC II a promising candidate for the full use of GAG to produce oligosaccharides.


Asunto(s)
Organismos Acuáticos/química , Arthrobacter/química , Proteínas Bacterianas/metabolismo , Condroitín Liasas/metabolismo , Sulfatos de Condroitina/metabolismo , Proteínas Bacterianas/química , Proteínas Bacterianas/aislamiento & purificación , Condroitín Liasas/química , Condroitín Liasas/aislamiento & purificación , Pruebas de Enzimas , Concentración de Iones de Hidrógeno , Hidrólisis , Cinética , Oligosacáridos/metabolismo , Proteínas Recombinantes/química , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo , Temperatura
4.
Glycobiology ; 26(6): 592-606, 2016 06.
Artículo en Inglés | MEDLINE | ID: mdl-26791444

RESUMEN

Chondroitin sulfate (CS) is a linear acidic polysaccharide composed of repeating disaccharide units of glucuronic acid and N-acetyl-d-galactosamine. The polysaccharide is modified with sulfate groups at different positions by a variety of sulfotransferases. CS chains exhibit various biological and pathological functions by interacting with cytokines and growth factors and regulating their signal transduction. The fine structure of the CS chain defines its specific biological roles. However, structural analysis of CS has been restricted to disaccharide analysis, hampering the understanding of the structure-function relationship of CS chains. Here, we chemo-enzymatically synthesized CS dodecasaccharides having various sulfate modifications using a bioreactor system of bacterial chondroitin polymerase mutants and various CS sulfotransferases. We developed a sequencing method for CS chains using the CS dodecasaccharides. The method consists of (i) labeling a reducing end with 2-aminopyridine (PA), (ii) partial digestion of CS with testicular hyaluronidase, followed by separation of PA-conjugated oligosaccharides with different chain lengths, (iii) limited digestion of these oligosaccharides with chondroitin lyase AC II into disaccharides, followed by labeling with 2-aminobenzamide, (iv) CS disaccharide analysis using a dual-fluorescence HPLC system (reversed-phase ion-pair and ion-exchange chromatography), and (v) estimation of the composition by calculating individual disaccharide ratios. This CS chain sequencing allows characterization of CS-modifying enzymes and provides a useful tool toward understanding the structure-function relationship of CS chains.


Asunto(s)
Proteínas Bacterianas/química , Sulfatos de Condroitina/análisis , Disacáridos/análisis , Escherichia coli/enzimología , Oligosacáridos/análisis , Acetilgalactosamina/química , Acetilgalactosamina/metabolismo , Aminopiridinas/química , Proteínas Bacterianas/metabolismo , Reactores Biológicos , Secuencia de Carbohidratos , Condroitín Liasas/química , Condroitín Liasas/metabolismo , Sulfatos de Condroitina/biosíntesis , Sulfatos de Condroitina/síntesis química , Cromatografía Líquida de Alta Presión , Cromatografía por Intercambio Iónico , Disacáridos/química , Escherichia coli/genética , Ácido Glucurónico/química , Ácido Glucurónico/metabolismo , Hexosiltransferasas/química , Hexosiltransferasas/metabolismo , Hialuronoglucosaminidasa/química , Hialuronoglucosaminidasa/metabolismo , Oligosacáridos/biosíntesis , Oligosacáridos/síntesis química , Análisis de Secuencia , Coloración y Etiquetado/métodos , Sulfotransferasas/química , Sulfotransferasas/metabolismo , ortoaminobenzoatos/química
5.
J Biol Chem ; 289(40): 27886-98, 2014 Oct 03.
Artículo en Inglés | MEDLINE | ID: mdl-25122756

RESUMEN

Lyases cleave glycosaminoglycans (GAGs) in an eliminative mechanism and are important tools for the structural analysis and oligosaccharide preparation of GAGs. Various GAG lyases have been identified from terrestrial but not marine organisms even though marine animals are rich in GAGs with unique structures and functions. Herein we isolated a novel GAG lyase for the first time from the marine bacterium Vibrio sp. FC509 and then recombinantly expressed and characterized it. It showed strong lyase activity toward hyaluronan (HA) and chondroitin sulfate (CS) and was designated as HA and CS lyase (HCLase). It exhibited the highest activities to both substrates at pH 8.0 and 0.5 m NaCl at 30 °C. Its activity toward HA was less sensitive to pH than its CS lyase activity. As with most other marine enzymes, HCLase is a halophilic enzyme and very stable at temperatures from 0 to 40 °C for up to 24 h, but its activity is independent of divalent metal ions. The specific activity of HCLase against HA and CS reached a markedly high level of hundreds of thousands units/mg of protein under optimum conditions. The HCLase-resistant tetrasaccharide Δ(4,5)HexUAα1-3GalNAc(6-O-sulfate)ß1-4GlcUA(2-O-sulfate)ß1-3GalNAc(6-O-sulfate) was isolated from CS-D, the structure of which indicated that HCLase could not cleave the galactosaminidic linkage bound to 2-O-sulfated d-glucuronic acid (GlcUA) in CS chains. Site-directed mutagenesis indicated that HCLase may work via a catalytic mechanism in which Tyr-His acts as the Brønsted base and acid. Thus, the identification of HCLase provides a useful tool for HA- and CS-related research and applications.


Asunto(s)
Proteínas Bacterianas/metabolismo , Condroitín Liasas/metabolismo , Condroitín/metabolismo , Ácido Hialurónico/metabolismo , Agua de Mar/microbiología , Vibrio/enzimología , Vibrio/aislamiento & purificación , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Condroitín/química , Condroitín Liasas/química , Condroitín Liasas/genética , Estabilidad de Enzimas , Ácido Hialurónico/química , Datos de Secuencia Molecular , Filogenia , Especificidad por Sustrato , Vibrio/química , Vibrio/genética
6.
J Agric Food Chem ; 72(23): 13196-13204, 2024 Jun 12.
Artículo en Inglés | MEDLINE | ID: mdl-38805590

RESUMEN

Chondroitin sulfate (CS) is the predominant glycosaminoglycan within the human body and is widely applied in various industries. Carbohydrate-binding modules (CBMs) possessing the capacity for carbohydrate recognition are verified to be important tools for polysaccharide investigation. Only one CS-specific CBM, PhCBM100, has hitherto been characterized. In the present study, two CBM96 domains present in the same putative PL8_3 chondroitin AC lyase were discovered and recombinantly expressed. The results of microtiter plate assays and affinity gel electrophoresis assays showed that the two corresponding proteins, DmCBM96-1 and DmCBM96-2, bind specifically to CSs. The crystal structure of DmCBM96-1 was determined at a 2.20 Å resolution. It adopts a ß-sandwich fold comprising two antiparallel ß-sheets, showing structural similarities to TM6-N4, which is the founding member of the CBM96 family. Site mutagenesis analysis revealed that the residues of Arg27, Lys45, Tyr51, Arg53, and Arg157 are critical for CS binding. The characterization of the two CBM96 proteins demonstrates the diverse ligand specificity of the CBM96 family and provides promising tools for CS investigation.


Asunto(s)
Sulfatos de Condroitina , Unión Proteica , Sulfatos de Condroitina/química , Sulfatos de Condroitina/metabolismo , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Sitios de Unión , Secuencia de Aminoácidos , Alineación de Secuencia , Condroitín Liasas/química , Condroitín Liasas/metabolismo , Condroitín Liasas/genética
7.
Artículo en Inglés | MEDLINE | ID: mdl-22297996

RESUMEN

Baculovirus envelope protein ODV-E66 (67-704), in which the N-terminal 66 amino acids are truncated, is a chondroitin lyase. It digests chondroitin and chondroitin 6-sulfate efficiently, but does not digest chondroitin 4-sulfate. This unique characteristic is useful for the preparation of specific chondroitin oligosaccharides and for investigation of the mechanism of baculovirus infection. ODV-E66 (67-704) was crystallized; the crystal diffracted to 1.8 Å resolution and belonged to space group P6(2) or P6(4), with unit-cell parameters a = b = 113.5, c = 101.5 Å. One molecule is assumed to be present per asymmetric unit, which gives a Matthews coefficient of 2.54 Å(3) Da(-1).


Asunto(s)
Baculoviridae/enzimología , Condroitín Liasas/química , Productos del Gen env/química , Cristalización , Difracción de Rayos X
8.
Int J Biol Macromol ; 165(Pt B): 2314-2325, 2020 Dec 15.
Artículo en Inglés | MEDLINE | ID: mdl-33132124

RESUMEN

Chondroitin sulfate (CS)/dermatan sulfate (DS) lyases play important roles in structural and functional studies of CS/DS. In this study, a novel CS/DS lyase (enCSase) was identified from the genome of the marine bacterium Photobacterium sp. QA16. This enzyme is easily heterologously expressed and purified as highly active form against various CS, DS and hyaluronic acid (HA). Under the optimal conditions, the specific activities of this enzyme towards CSA, CSC, CSD, CSE, DS and HA were 373, 474, 171, 172, 141 and 97 U/mg of proteins, respectively. As an endolytic enzyme, enCSase degrades HA to unsaturated hexa- and tetrasaccharides but CS/DS to unsaturated tetra- and disaccharides as the final products. Sequencing analysis showed that the structures of tetrasaccharides in the final products of CS variants were not unique but were highly variable, indicating the randomness of substrate degradation by this enzyme. Further studies showed that the smallest substrate of enCSase was octasaccharide for HA but hexasaccharide for CS/DS, which could explain why this enzyme cannot degrade HA hexa- and tetrasaccharides and CS/DS tetrasaccharides further. It is believed that enCSase may be a very useful tool for structural and functional studies and related applications of CS/DS and HA.


Asunto(s)
Condroitín Liasas/metabolismo , Sulfatos de Condroitina/química , Dermatán Sulfato/análogos & derivados , Photobacterium/enzimología , Biocatálisis , Condroitín Liasas/química , Condroitín Liasas/genética , Dermatán Sulfato/química , Mutación/genética , Filogenia , Proteínas Recombinantes/metabolismo , Especificidad por Sustrato , Sulfatos , Factores de Tiempo
9.
Proteins ; 72(3): 929-35, 2008 Aug 15.
Artículo en Inglés | MEDLINE | ID: mdl-18300253

RESUMEN

It has recently been shown that in proteins the atomic mean-square displacement (or B-factor) can be related to the number of the neighboring atoms (or protein contact number), and that this relationship allows one to compute the B-factor profiles directly from protein contact number. This method, referred to as the protein contact model, is appealing, since it requires neither trajectory integration nor matrix diagonalization. As a result, the protein contact model can be applied to very large proteins and can be implemented as a high-throughput computational tool to compute atomic fluctuations in proteins. Here, we show that this relationship can be further refined to that between the atomic mean-square displacement and the weighted protein contact-number, the weight being the square of the reciprocal distance between the contacting pair. In addition, we show that this relationship can be utilized to compute the cross-correlation of atomic motion (the B-factor is essentially the auto-correlation of atomic motion). For a nonhomologous dataset comprising 972 high-resolution X-ray protein structures (resolution <2.0 A and sequence identity <25%), the mean correlation coefficient between the X-ray and computed B-factors based on the weighted protein contact-number model is 0.61, which is better than those of the original contact-number model (0.51) and other methods. We also show that the computed correlation maps based on the weighted contact-number model are globally similar to those computed through normal model analysis for some selected cases. Our results underscore the relationship between protein dynamics and protein packing. We believe that our method will be useful in the study of the protein structure-dynamics relationship.


Asunto(s)
Proteínas/química , Aminoácidos/química , Carbono , Condroitín Liasas/química , Grupo Citocromo c/química , Bases de Datos de Proteínas , Modelos Moleculares , Peso Molecular , Succinato Deshidrogenasa/química
10.
Int J Biol Macromol ; 109: 980-991, 2018 Apr 01.
Artículo en Inglés | MEDLINE | ID: mdl-29155196

RESUMEN

The structure of chondroitin AC lyase (PsPL8A) of family 8 polysaccharide lyase was characterized. Modeled PsPL8A structure showed, it contains N-terminal (α/α)6 incomplete toroidal fold and a layered ß sandwich structure at C-terminal. Ramchandran plot displayed 98.5% residues in favoured and 1.2% in generously allowed region. Secondary structure of PsPL8A by CD revealed 27.31% α helices 22.7% ß sheets and 49.9% random coils. Protein melting study showed, PsPL8A completely unfolds at 60°C. SAXS analysis showed, PsPL8A is fully folded in solution form. The ab initio derived dummy model of PsPL8A superposed well with its modeled structure excluding some α-helices and loop region. Structural superposition and docking analysis showed, N153, W105, H203, Y208, Y212, R266 and E349 were involved in catalysis. Mutants N153A, H203A, Y212F, R266A and E349A created by SDM revealed no residual activity. Isothermal titration calorimetry analysis of Y212F and H203A with C4S polysaccharide, showed moderate binding by Y212F (Ka=9.56±3.81×105) and no binding with H203A, showing active contribution of Y212 in substrate binding. Residues Y212 and H203 or R266 might act as general base and general acid respectively. Residues N153 and E349 are likely contributing in charge neutralization and stabilizing enolate anion intermediate during ß-elimination.


Asunto(s)
Condroitín Liasas/química , Condroitín Liasas/metabolismo , Pedobacter/enzimología , Secuencia de Aminoácidos , Sitios de Unión , Condroitín Liasas/genética , Dicroismo Circular , Activación Enzimática , Modelos Moleculares , Conformación Molecular , Mutagénesis Sitio-Dirigida , Mutación , Pedobacter/genética , Unión Proteica , Proteínas Recombinantes , Análisis de Secuencia de ADN , Espectrofotometría Ultravioleta , Relación Estructura-Actividad , Especificidad por Sustrato
11.
Carbohydr Res ; 424: 54-8, 2016 Apr 07.
Artículo en Inglés | MEDLINE | ID: mdl-26986023

RESUMEN

The chondroitin sulfate (CS)/dermatan sulfate (DS) hybrid chain was extracted from specific tissues of several kinds of sharks and rays. The contents and sulfation patterns of the CS/DS hybrid chain were precisely analyzed by digestion with chondroitinases ABC and AC. All samples predominantly contained the A- and C-units. Furthermore, all samples characteristically contained the D-unit. Species-specific differences were observed in the contents of the CS/DS hybrid chain, which were the highest in Mako and Blue sharks and Sharpspine skates, but were lower in Hammerhead sharks. Marked differences were observed in the ratio of the C-unit/A-unit between sharks and rays. The contents of the CS/DS hybrid chain and the ratio of the C-unit/A-unit may be related to an oxidative stress-decreasing ability.


Asunto(s)
Sulfatos de Condroitina/química , Dermatán Sulfato/química , Estrés Oxidativo , Animales , Condroitina ABC Liasa/química , Condroitín Liasas/química , Tiburones , Rajidae
12.
Biochim Biophys Acta ; 1597(2): 260-70, 2002 Jun 03.
Artículo en Inglés | MEDLINE | ID: mdl-12044904

RESUMEN

Chondroitin AC lyase (chondroitinase EC 4.2.2.5), an eliminase from Flavobacterium heparinum, cleaves chondroitin sulfate glycosaminoglycans (GAGs) at 1,4 glycosidic linkages between N-acetylgalactosamine and glucuronic acid residues. Cleavage occurs through beta-elimination in a random endolytic action pattern. Crystal structures of chondroitin AC lyase (wild type) complexed with oligosaccharides reveal a binding site within a narrow and shallow protein channel, suggesting several amino acids as candidates for the active site residues. Site-specific mutagenesis studies on residues within the active-site tunnel revealed that only the Arg to Ala 292 mutation (R292A) retained activity. Furthermore, structural data suggested that R292 was primarily involved in recognition of N-acetyl or O-sulfo moieties of galactosamine residues and did not directly participate in catalysis. The current study demonstrates that the R292A mutation affords approximately 10-fold higher K(m) values but no significant change in V(max), consistent with hypothesis that R292 is involved in binding the O-sulfo moiety of the saccharide residues. Change in chondroitin sulfate viscosity, as a function of its enzymatic cleavage, affords a shallower concave curve for the R292A mutant, suggesting its action pattern is neither purely random endolytic nor purely random exolytic. Product studies using gel electrophoresis confirm the altered action pattern of this mutant. Thus, these data suggest that the R292A mutation effectively reduces binding affinity, making it possible for the oligosaccharide chain, still bound after initial endolytic cleavage, to slide through the tunnel to the catalytic site for subsequent, processive, step-wise, exolytic cleavage.


Asunto(s)
Condroitín Liasas/química , Condroitín Liasas/metabolismo , Flavobacterium/enzimología , Sustitución de Aminoácidos , Arginina/química , Secuencia de Bases , Secuencia de Carbohidratos , Dominio Catalítico/genética , Condroitín Liasas/genética , Sulfatos de Condroitina/química , Sulfatos de Condroitina/metabolismo , ADN Bacteriano/genética , Flavobacterium/genética , Cinética , Modelos Químicos , Datos de Secuencia Molecular , Mutagénesis Sitio-Dirigida , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Especificidad por Sustrato , Viscosidad
13.
J Mol Biol ; 337(2): 367-86, 2004 Mar 19.
Artículo en Inglés | MEDLINE | ID: mdl-15003453

RESUMEN

Chondroitin lyases (EC 4.2.2.4 and EC 4.2.2.5) are glycosaminoglycan-degrading enzymes that act as eliminases. Chondroitin lyase AC from Arthrobacter aurescens (ArthroAC) is known to act on chondroitin 4-sulfate and chondroitin 6-sulfate but not on dermatan sulfate. Like other chondroitin AC lyases, it is capable of cleaving hyaluronan. We have determined the three-dimensional crystal structure of ArthroAC in its native form as well as in complex with its substrates (chondroitin 4-sulfate tetrasaccharide, CS(tetra) and hyaluronan tetrasaccharide) at resolution varying from 1.25 A to 1.9A. The primary sequence of ArthroAC has not been previously determined but it was possible to determine the amino acid sequence of this enzyme from the high-resolution electron density maps and to confirm it by mass spectrometry. The enzyme-substrate complexes were obtained by soaking the substrate into the crystals for varying lengths of time (30 seconds to ten hours) and flash-cooling the crystals. The electron density map for crystals soaked in the substrate for as short as 30 seconds showed the substrate clearly and indicated that the ring of central glucuronic acid assumes a distorted boat conformation. This structure strongly supports the lytic mechanism where Tyr242 acts as a general base that abstracts the proton from the C5 position of glucuronic acid while Asn183 and His233 neutralize the charge on the glucuronate acidic group. Comparison of this structure with that of chondroitinase AC from Flavobacterium heparinum (FlavoAC) provides an explanation for the exolytic and endolytic mode of action of ArthroAC and FlavoAC, respectively.


Asunto(s)
Arthrobacter/enzimología , Condroitín Liasas/química , Secuencia de Aminoácidos , Arthrobacter/genética , Dominio Catalítico , Condroitín Liasas/genética , Condroitín Liasas/metabolismo , Secuencia Conservada , Cristalografía por Rayos X , Cinética , Sustancias Macromoleculares , Modelos Moleculares , Datos de Secuencia Molecular , Pliegue de Proteína , Homología de Secuencia de Aminoácido , Electricidad Estática , Especificidad por Sustrato
14.
J Mol Biol ; 288(4): 635-47, 1999 May 14.
Artículo en Inglés | MEDLINE | ID: mdl-10329169

RESUMEN

Glycosaminoglycans (GAGs), highly sulfated polymers built of hexosamine-uronic acid disaccharide units, are major components of the extracellular matrix, mostly in the form of proteoglycans. They interact with a large array of proteins, in particular of the blood coagulation cascade. Degradation of GAGs in mammalian systems occurs by the action of GAG hydrolases. Bacteria express a large number of GAG-degrading lyases that break the hexosamine-uronic acid bond to create an unsaturated sugar ring. Flavobacterium heparinum produces at least five GAG lyases of different specificity. Chondroitin AC lyase (chondroitinase AC, 75 kDa) is highly active toward chondroitin 4-sulfate and chondroitin-6 sulfate. Its crystal structure has been determined to 1.9 A resolution. The enzyme is composed of two domains. The N-terminal domain of approximately 300 residues contains mostly alpha-helices which form a doubly-layered horseshoe (a subset of the (alpha/alpha)6 toroidal topology). The approximately 370 residues long C-terminal domain is made of beta-strands arranged in a four layered beta-sheet sandwich, with the first two sheets having nine strands each. This fold is novel and has no counterpart in full among known structures. The sequence of chondroitinase AC shows low level of homology to several hyaluronate lyases, which likely share its fold. The shape of the molecule, distribution of electrostatic potential, the pattern of conservation of the amino acids and the results of mutagenesis of hyaluronate lyases, indicate that the enzymatic activity resides primarily within the N-terminal domain. The most likely candidate for the catalytic base is His225. Other residues involved in catalysis and/or substrate binding are Arg288, Arg292, Lys298 and Lys299.


Asunto(s)
Condroitín Liasas/química , Glicosaminoglicanos/metabolismo , Secuencia de Aminoácidos , Sitios de Unión , Calcio/metabolismo , Catálisis , Condroitín Liasas/metabolismo , Cristalografía por Rayos X , Glicosilación , Hidrólisis , Modelos Moleculares , Datos de Secuencia Molecular , Unión Proteica , Conformación Proteica , Homología de Secuencia de Aminoácido
15.
J Mol Biol ; 299(4): 885-95, 2000 Jun 16.
Artículo en Inglés | MEDLINE | ID: mdl-10843845

RESUMEN

Hyaluronic acid (HA) is an important constituent of the extracellular matrix; its bacterial degradation has been postulated to contribute to the spread of certain streptococci through tissue. Pneumococci and other streptococci produce hyaluronate lyase, an enzyme which depolymerizes HA, thus hyaluronate lyase might contribute directly to bacterial invasion. Although two different mechanisms for lyase action have been proposed, there was no crystallographic evidence to support those mechanisms. Here, we report the high-resolution crystal structure of Streptococcus pneumoniae hyaluronate lyase in the presence of HA disaccharide product, which ultimately provides the first crystallographic evidence for the binding of HA to hyaluronate lyase. This structural complex revealed a key interaction between the Streptococcus peneumoniae hyaluronate lyase protein and the product, and supports our previously proposed novel catalytic mechanism for HA degradation based on the native Streptococcus peneumoniae hyaluronate lyase structure. The information provided by this complex structure will likely be useful in the development of antimicrobial pharmaceutical agents.


Asunto(s)
Disacáridos/metabolismo , Ácido Hialurónico/metabolismo , Polisacárido Liasas/química , Polisacárido Liasas/metabolismo , Streptococcus pneumoniae/enzimología , Sitios de Unión , Calcio/farmacología , Conformación de Carbohidratos , Secuencia de Carbohidratos , Catálisis/efectos de los fármacos , Condroitín Liasas/química , Cristalografía por Rayos X , Disacáridos/química , Ácido Hialurónico/química , Enlace de Hidrógeno , Modelos Moleculares , Datos de Secuencia Molecular , Unión Proteica , Pliegue de Proteína , Estructura Secundaria de Proteína , Estructura Terciaria de Proteína , Electricidad Estática , Relación Estructura-Actividad
16.
J Invest Dermatol ; 109(2): 213-8, 1997 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-9242510

RESUMEN

CD44 is a group of cell surface glycoproteins that is generated from a single gene by mRNA splice variation. Its functions in matrix adhesion and tumor invasion are strongly influenced by glycosylation. We studied the glycosylated tissue forms of CD44 from extracts of normal adult human epidermis by using western blotting and immunoprecipitation from short-term skin organ cultures. An antibody for CD44 (Hermes 3) precipitated 7-17% of all 35SO4-labeled proteoglycans (PGs) synthesized in epidermis. Immunoprecipitates digested with heparitinase lost 40-68% of incorporated 35SO4 and 24-40% of [3H]glucosamine, indicating that heparan sulfate was the predominant glycosaminoglycan in epidermal CD44. Chondroitinase ABC released 10-25% and 6-12% of 35SO4 and [3H]glucosamine, respectively. Less than 5% of both isotopes were susceptible to keratanase. Five to 33% of 35SO4 and 26-37% of [3H]glucosamine, however, was released by endo-beta-galactosidase, implying marked substitution by oligosaccharides with N-acetyllactosamine repeats. Heparitinase pretreatment retarded, whereas endo-beta-galactosidase enhanced the mobility of the > or = 180-kDa polydisperse CD44 on agarose gel electrophoresis. On SDS-polyacrylamide gel electrophoresis, however, western blotting and fluorographs of 35SO4-labeled immunoprecipitates showed the main CD44 isoform at > or = 250 kDa and a shift to 180-200 kDa after heparitinase treatment. Keratanase, keratanase II, and chondroitinase ABC had minor effects. A less abundant form of CD44, with a core of 100 kDa, partly substituted with chondroitinase ABC- and endo-beta-galactosidase-sensitive chains, was also present. Therefore, the large heparan sulfate-substituted CD44 forms a significant part of all proteoglycans in normal human epidermis. Both the large and the 100-kDa variant of epidermal CD44 contain endo-beta-galactosidase-sensitive oligosaccharides not previously noted in other cells or tissues.


Asunto(s)
Glicósido Hidrolasas , Receptores de Hialuranos/análisis , Receptores de Hialuranos/química , Piel/química , beta-Galactosidasa/química , Adulto , Anticuerpos/inmunología , Reacciones Antígeno-Anticuerpo , Condroitín Liasas/química , Electroforesis en Gel de Agar , Electroforesis en Gel de Poliacrilamida/métodos , Femenino , Heparitina Sulfato/química , Humanos , Receptores de Hialuranos/inmunología , Peso Molecular , Oligosacáridos/inmunología , Polisacárido Liasas/farmacología , Pruebas de Precipitina , Proteoglicanos/análisis , Proteoglicanos/química , Dodecil Sulfato de Sodio
17.
Int J Dev Neurosci ; 14(3): 233-48, 1996 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-8842801

RESUMEN

Chondroitin sulfate proteoglycans, cell surface and extracellular matrix molecules in both neural and non-neural tissues, are highly regulated during normal development. Entire proteoglycan molecules may be either up-regulated or down-regulated, or only the chondroitin sulfate glycosaminoglycan portions of these molecules may be modified. Subtle changes in the chemistries of chondroitin sulfate chains can now be identified through the use of a panel of anti-chondroitin sulfate monoclonal antibodies. Each of these antibodies recognizes specific chemical structures which are non-randomly dispersed along the lengths of chondroitin sulfate chains. The location of individual epitopes within defined domains in these chains is demonstrated through controlled treatments of aggrecan with chondroitinase ABC, whereby portions of these chains are removed from the non-reducing terminal ends and where the remainder of the chains remains covalently attached to the core protein. In these situations, some epitopes, such as those recognized by antibodies CS-56 and 6C3, can be removed without loss of other epitopes, such as that recognized by antibody 4C3. The independent expression of individual epitopes is demonstrated by immunocytochemical analyses of developing skin appendages in embryonic chicks and fetal humans. These are sites where highly patterned morphogenetic movements result from epithelial-mesenchymal interactions. In both chicks and humans, some epitopes are constitutively expressed while others are strictly regulated in the mesenchymal portions of the developing skin appendages. These data strongly suggest that chondroitin sulfate proteoglycans, including their chondroitin sulfate chains, have important roles in regulating these epithelial mesenchymal interactions. Furthermore, these data underscore the significance of the aforementioned observation that individual epitopes are located in specific domains within chondroitin sulfate chains. The highly organized expression of chondroitin sulfate proteoglycans in the development of the central nervous system strongly argues for a similar role for these molecules in the organs that comprise this system.


Asunto(s)
Anticuerpos Monoclonales , Sulfatos de Condroitina/biosíntesis , Animales , Médula Ósea/metabolismo , Células de la Médula Ósea , Embrión de Pollo , Condroitín Liasas/química , Sulfatos de Condroitina/química , Sulfatos de Condroitina/inmunología , Cromatografía de Afinidad , Ensayo de Inmunoadsorción Enzimática , Células Epiteliales , Epitelio/metabolismo , Epítopos , Humanos , Hidrólisis , Inmunohistoquímica , Proteoglicanos/biosíntesis , Piel/citología , Piel/embriología , Piel/metabolismo
18.
Arch Pharm Res ; 23(2): 182-6, 2000 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-10836748

RESUMEN

Chondroitin sulfates proteoglycans were isolated from human placenta. For the identification of enzymatic digestion products of isolated proteoglycan, strong anion, exchange-high performance liquid chromatography (SAX-HPLC) was performed. By the action of chondroitin ABC and chondroitin B lyase, three unsaturated disaccharides 2-acetamide-2-deoxy-3-O-(beta-D-gluco-4-enepyranosyluronic acid)-D-galactose (deltaDi-OS), 2-acetamide-2-deoxy-3-O-(beta-D-gluco-4-enepyranosyluronic acid)-6-O-sulfo-D-galactose (deltaDi-6S) and 2-acetamide-2-deoxy-3-O-(beta-D-gluco-4-enepyranosyluronic acid)-4-O-sulfo-D-galactose (deltaDi-4S) were produced from the human placenta proteoglycan. The anticoagulant activity of chondroitin sulfate proteoglycan was evaluated by activated partial thromboplastin time (aPTT) assay and thrombin time (TT) assay. The clotting times of aPTT and TT were increased from 72 to 144 sec and 19 to 27 sec, respectively. The immuno-modulating activity of chondroitin sulfate proteoglycan was examined by cell proliferation assay and these results suggest that it may play a role in suppression of the function of immune-related cells.


Asunto(s)
Placenta/química , Proteoglicanos/química , Proteoglicanos/farmacología , Animales , Anticoagulantes/farmacología , Coagulación Sanguínea/efectos de los fármacos , División Celular/efectos de los fármacos , Condroitina ABC Liasa/química , Condroitín Liasas/química , Sulfatos de Condroitina/química , Sulfatos de Condroitina/aislamiento & purificación , Disacáridos/química , Disacáridos/aislamiento & purificación , Disacáridos/farmacología , Femenino , Humanos , Hidrólisis , Inmunosupresores/farmacología , Ratones , Ratones Endogámicos BALB C , Oligosacáridos/química , Oligosacáridos/aislamiento & purificación , Oligosacáridos/farmacología , Proteoglicanos/aislamiento & purificación , Espectrofotometría Ultravioleta
19.
FEBS Lett ; 587(24): 3943-8, 2013 Dec 11.
Artículo en Inglés | MEDLINE | ID: mdl-24446551

RESUMEN

Chondroitin lyases have been known as pathogenic bacterial enzymes that degrade chondroitin. Recently, baculovirus envelope protein ODV-E66 was identified as the first reported viral chondroitin lyase. ODV-E66 has low sequence identity with bacterial lyases at <12%, and unique characteristics reflecting the life cycle of baculovirus. To understand ODV-E66's structural basis, the crystal structure was determined and it was found that the structural fold resembled that of polysaccharide lyase 8 proteins and that the catalytic residues were also conserved. This structure enabled discussion of the unique substrate specificity and the stability of ODV-E66 as well as the host specificity of baculovirus.


Asunto(s)
Baculoviridae/enzimología , Condroitín Liasas/química , Proteínas del Envoltorio Viral/química , Secuencia de Aminoácidos , Baculoviridae/genética , Condroitín Liasas/genética , Condroitín Liasas/metabolismo , Cristalografía por Rayos X , Análisis Mutacional de ADN , Estabilidad de Enzimas , Modelos Moleculares , Datos de Secuencia Molecular , Conformación Proteica , Pliegue de Proteína , Homología de Secuencia de Aminoácido , Proteínas del Envoltorio Viral/genética , Proteínas del Envoltorio Viral/metabolismo
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