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1.
Mol Cell ; 78(3): 506-521.e6, 2020 05 07.
Artículo en Inglés | MEDLINE | ID: mdl-32386543

RESUMEN

Higher-order chromatin structure and DNA methylation are implicated in multiple developmental processes, but their relationship to cell state is unknown. Here, we find that large (>7.3 kb) DNA methylation nadirs (termed "grand canyons") can form long loops connecting anchor loci that may be dozens of megabases (Mb) apart, as well as inter-chromosomal links. The interacting loci cover a total of ∼3.5 Mb of the human genome. The strongest interactions are associated with repressive marks made by the Polycomb complex and are diminished upon EZH2 inhibitor treatment. The data are suggestive of the formation of these loops by interactions between repressive elements in the loci, forming a genomic subcompartment, rather than by cohesion/CTCF-mediated extrusion. Interestingly, unlike previously characterized subcompartments, these interactions are present only in particular cell types, such as stem and progenitor cells. Our work reveals that H3K27me3-marked large DNA methylation grand canyons represent a set of very-long-range loops associated with cellular identity.


Asunto(s)
Cromatina/química , Cromatina/genética , Metilación de ADN , Células Madre Hematopoyéticas/citología , Células Madre Hematopoyéticas/fisiología , Factor de Unión a CCCTC/genética , Factor de Unión a CCCTC/metabolismo , Diferenciación Celular , Cromatina/metabolismo , Proteína Potenciadora del Homólogo Zeste 2/genética , Proteína Potenciadora del Homólogo Zeste 2/metabolismo , Epigénesis Genética , Regulación de la Expresión Génica , Histonas/genética , Histonas/metabolismo , Proteínas de Homeodominio/genética , Humanos , Hibridación Fluorescente in Situ , Lisina/genética , Lisina/metabolismo , Proteínas Nucleares/genética , Factores de Transcripción SOXB1/genética , Proteína de la Caja Homeótica de Baja Estatura/genética , Factores de Transcripción/genética
2.
J Perinat Med ; 52(1): 96-101, 2024 Jan 29.
Artículo en Inglés | MEDLINE | ID: mdl-37846158

RESUMEN

OBJECTIVES: The phenotypes of Xp22.33 or Yp11.32 microdeletions comprising the short-stature homeobox (SHOX) gene have been extensively described in adults and children. Herein, the prenatal ultrasound phenotype and pregnancy outcomes of fetuses with Xp22.33/Yp11.32 microdeletions were analyzed to improve our understanding, diagnosis, and monitoring of this genetic condition in the fetal stage. METHODS: A total of 9,100 pregnant women referred to tertiary units for prenatal diagnosis were evaluated by chromosomal microarray analysis(CMA). RESULTS: Seven (0.08 %) fetuses had Xp22.33/Yp11.32 microdeletions, ranging from 243 kb to 1.1 Mb, that comprised SHOX. The ultrasonic phenotypes differed among these fetuses, with three fetuses presenting abnormal bone development, one had labial-palatal deformity and strawberry head, two had an abnormal ultrasonic soft marker, and one had no abnormalities. After genetic counseling, only one couple underwent pedigree assessment, which confirmed the paternal origin of the microdeletion. This infant presented delayed speech development, whereas other three infants showed a typical postnatal development. In three cases, the parents chose to terminate the pregnancy. CONCLUSIONS: The ultrasonic phenotype of fetuses with Xp22.33/Yp11.32 microdeletions resulting in SHOX heterozygosity loss is variable. Prenatal CMA can quickly and effectively diagnose Xp22.33/Yp11.32 microdeletions and SHOX loss, which may help prenatal counseling.


Asunto(s)
Resultado del Embarazo , Diagnóstico Prenatal , Niño , Adulto , Lactante , Humanos , Embarazo , Femenino , Ultrasonografía , Fenotipo , Feto , Proteína de la Caja Homeótica de Baja Estatura/genética
3.
Zhonghua Yi Xue Yi Chuan Xue Za Zhi ; 41(2): 205-208, 2024 Feb 10.
Artículo en Zh | MEDLINE | ID: mdl-38311560

RESUMEN

OBJECTIVE: To explore the clinical manifestations of two fetuses harboring heterozygous deletions of the SHOX gene. METHODS: Two pregnant women who had presented at the Prenatal Diagnosis Center of Nanjing Drum Tower Hospital respectively on June 24, 2022 and July 27, 2022 were selected as the study subjects. In case 1, prenatal ultrasonography had shown short femur and intrauterine growth retardation of the fetus. Case 2 had a history of spontaneous abortions due to structural chromosomal aberrations. Fetus 1 had undergone a test for the FGFR3 gene, and both fetuses were subjected to single nucleotide polymorphism-based microarray (SNP array) analysis. RESULTS: After excluding the influence of FGFR3 gene variant, fetus 1 was found to harbor a heterozygous 883 kb deletion at Xpter or Ypter, whilst fetus 2 was found to harbor a 5.75 Mb deletion in the Xpter region. Both deletions have encompassed the SHOX gene. The origin of the deletion in fetus 1 was unknown, whilst that in fetus 2 was inherited from its mother. Fetus 1 has been delivered at term with a normal phenotype, and fetus 2 was not born yet. CONCLUSION: The intrauterine and postnatal phenotypes of fetuses may be predicted by combining the ultrasound finding, parental phenotype and results of CMA, and the results can facilitate genetic counseling and decision making over the pregnancy.


Asunto(s)
Trastornos de los Cromosomas , Diagnóstico Prenatal , Embarazo , Femenino , Humanos , Diagnóstico Prenatal/métodos , Aberraciones Cromosómicas , Fenotipo , Trastornos de los Cromosomas/genética , Feto , Proteína de la Caja Homeótica de Baja Estatura/genética
4.
Am J Med Genet A ; 191(12): 2884-2889, 2023 12.
Artículo en Inglés | MEDLINE | ID: mdl-37638701

RESUMEN

We present a female patient with a complex sex chromosomal rearrangement [GRCh38] Xp22.33(10701_981101)x1,Yq11.221q11.23(13948013_26483746)x1 who conceived spontaneously and carried a healthy pregnancy to term. The patient presented with extreme short stature (more than 4SD below expected) and a bilateral Madelung deformity suggesting a possible SHOX deletion. The patient was otherwise medically well. This patient's short stature was found to be a result of a complex chromosome rearrangement involving a partial X chromosome deletion, which included the SHOX gene and a gain of Y chromosomal material. The Y chromosome material did not contain the SRY gene locus. This is the first recorded case to date of this rearrangement in a female who spontaneously conceived which resulted in a live birth. This patient had normal external and internal anatomy and normal endocrine evaluation with normal puberty. X-inactivation studies revealed no evidence of skewed inactivation.


Asunto(s)
Enanismo , Proteínas de Homeodominio , Embarazo , Humanos , Femenino , Proteínas de Homeodominio/genética , Proteína de la Caja Homeótica de Baja Estatura/genética , Cromosoma Y , Aberraciones Cromosómicas , Trastornos del Crecimiento/genética
5.
Prenat Diagn ; 43(10): 1355-1365, 2023 09.
Artículo en Inglés | MEDLINE | ID: mdl-37526276

RESUMEN

OBJECTIVE: To explore the intrauterine phenotypic spectrum of short stature homeobox-containing (SHOX) gene-associated skeletal dysplasia and provide genetic counseling at-risk pregnancies. METHOD: We analyzed the fetuses with SHOX-microdeletions identified by single nucleotide polymorphism (SNP)-array. The intrauterine phenotypes and outcomes were further elaborated. RESULTS: Nine fetuses carrying a single SHOX-microdeletion were reported, with deletion sizes ranging from 0.134 to 1.35 Mb. Shortened long bones were observed in all fetuses, varying from -2.0 standard deviation (SD) to -5.3 SD. Moreover, all cases had a femur length/foot ratio less than 0.87 and a femur/abdominal circumference ratio greater than 0.16, suggesting that non-lethal skeletal dysplasia may be involved. Two fetuses showed intrauterine growth restriction, and two had nasal bone hypoplasia. Prenatal ultrasonography did not reveal other obvious anomalies, including the Madelung deformity. Five microdeletions were inherited and one was de novo. Five terminations and four newborns were recorded. Two newborns had normal stature, and two were short-statured (height <3rd percentile), with one having inflexible wrists. CONCLUSIONS: SHOX haploinsufficiency may manifest with shortened fetal long bones. The combination of history taking, prenatal ultrasonography, and SNP-array can prompt early prenatal diagnosis and timely postnatal treatment of SHOX-associated skeletal dysplasia.


Asunto(s)
Feto , Trastornos del Crecimiento , Embarazo , Femenino , Humanos , Recién Nacido , Proteína de la Caja Homeótica de Baja Estatura/genética , Trastornos del Crecimiento/genética , Retardo del Crecimiento Fetal/diagnóstico por imagen , Retardo del Crecimiento Fetal/genética , Fenotipo , Proteínas de Homeodominio/genética
6.
Turk J Med Sci ; 53(2): 518-525, 2023 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-37476877

RESUMEN

BACKGROUND: : In this cross-sectional study, we aimed to evaluate auxological measurements and detailed body proportions of recombinant human growth hormone (GH)-treated patients with Turner syndrome (TS) and compare them with a group of healthy females. METHODS: We evaluated 42 patients with TS who received GH treatment and 20 healthy controls. Anthropometric measurements were taken and target height, body mass index (BMI), arm span-height difference, extremity-to-trunk ratio, and Manouvrier's skelic index were calculated. RESULTS: : The median (min-max) age of the patients at the time of evaluation was 13.6 (4.3-20.7) years, and the control group was 12.9 (3.8-23.7) years. Height, sitting height, and arm span of TS patients were significantly lower than those of the control group. Sitting height/height ratio (SHR) was in normal ranges in both groups and BMI was significantly higher in TS patients when compared to the control group. According to Manouvrier's skelic index, TS patients had shorter legs than the control group (p = 0.001). The extremity-trunk ratio was significantly decreased in TS patients compared to healthy controls (p < 0.001). There was no significant difference between the karyotype groups in terms of these indexes. DISCUSSION: TS patients had short stature, increased BMI and waist circumference, normal head circumference, and decreased extremity-trunk ratio. Sitting height and leg length were short; however, the SHR standard deviation score (SDS) was in the normal range. Despite being treated with GH, TS patients had disproportionate short stature. The disproportion in TS patients was similar to short-stature homeobox-containing gene (SHOX) deficiency, which is considered to be SHOX haploinsufficiency in the etiopathogenesis of short stature.


Asunto(s)
Hormona de Crecimiento Humana , Síndrome de Turner , Femenino , Humanos , Adolescente , Adulto Joven , Adulto , Síndrome de Turner/tratamiento farmacológico , Estudios Transversales , Estatura/genética , Hormona de Crecimiento Humana/uso terapéutico , Índice de Masa Corporal , Proteína de la Caja Homeótica de Baja Estatura
7.
Am J Med Genet A ; 188(7): 2173-2177, 2022 07.
Artículo en Inglés | MEDLINE | ID: mdl-35319168

RESUMEN

Haploinsufficiency of SHOX represents one of the major genetic causes of nonsyndromic short stature. To date, eight DNA elements around SHOX exons have been proposed as putative enhancer regions. Although six copy-number variations (CNVs) downstream to the known enhancer regions have recently been identified in patients with short stature, the pathogenicity of these CNVs remains uncertain. Here, we identified a paternally derived SHOX far-downstream deletion in a boy. The deletion involved a ~100 kb genomic interval at a position >60 kb away from the known enhancer regions. The boy exhibited moderate short stature with nonspecific skeletal changes. The height of the father was within the normal range but lower than the mid-parental height. The deletion of the boy and the six previously reported CNVs mostly overlapped; however, all CNVs had unique breakpoints. The deletion of our case encompassed a ~30 kb genomic interval that has previously been associated with a 4C-seq peak, as well as several SHOX-regulatory SNPs/indels. These results indicate that the SHOX far-downstream region contains a novel cis-acting enhancer, whose deletion leads to nonsyndromic short stature of various degree. In addition, our data highlight genomic instability of SHOX-flanking regions that underlies diverse nonrecurrent CNVs.


Asunto(s)
Enanismo , Osteocondrodisplasias , Variaciones en el Número de Copia de ADN/genética , Enanismo/genética , Trastornos del Crecimiento/genética , Proteínas de Homeodominio/genética , Humanos , Masculino , Osteocondrodisplasias/genética , Proteína de la Caja Homeótica de Baja Estatura/genética
8.
Am J Med Genet A ; 185(12): 3547-3553, 2021 12.
Artículo en Inglés | MEDLINE | ID: mdl-32618131

RESUMEN

49,XXXXY is an X and Y chromosome variation that occurs in 1:85,000 to 1:100,000 live male births. Previous case studies have described boys with this disorder to be shorter than average when compared with boys with only one extra chromosome and with the mean stature in a small cohort reported to range from the seventh to 33rd percentile. The origin behind the possible differences in height between boys with 47,XXY and 49,XXXXY is currently unknown, however one study hypothesized that it was due to a difference in the expression of the SHOX gene. This study reports on the anthropometric measurements of 84 boys with 49,XXXXY. Forty-five percent of children with 49,XXXXY were found to be below the third percentile in height at the time of evaluation. In addition, 7.14% of the cohort were diagnosed and given treatment for growth hormone deficiency (GHD). The analysis of this cohort demonstrates that the below average heights seen throughout childhood in this population potentially begins prenatally and suggests that boys with 49,XXXXY may be at a higher risk for intrauterine growth restriction (IUGR) and GHD. Future research is needed to investigate the etiology of the poor growth in boys with 49,XXXXY and evaluate the incidence of GHD and IUGR in this population.


Asunto(s)
Enanismo Hipofisario/genética , Retardo del Crecimiento Fetal/genética , Síndrome de Klinefelter/genética , Proteína de la Caja Homeótica de Baja Estatura/genética , Antropometría , Niño , Preescolar , Cromosomas Humanos X/genética , Cromosomas Humanos Y/genética , Enanismo Hipofisario/complicaciones , Enanismo Hipofisario/diagnóstico por imagen , Enanismo Hipofisario/fisiopatología , Retardo del Crecimiento Fetal/diagnóstico por imagen , Retardo del Crecimiento Fetal/fisiopatología , Hormona del Crecimiento/deficiencia , Hormona del Crecimiento/genética , Humanos , Lactante , Recién Nacido , Síndrome de Klinefelter/complicaciones , Síndrome de Klinefelter/diagnóstico por imagen , Síndrome de Klinefelter/fisiopatología , Masculino , Aberraciones Cromosómicas Sexuales
9.
J Med Genet ; 57(12): 851-857, 2020 12.
Artículo en Inglés | MEDLINE | ID: mdl-32518174

RESUMEN

INTRODUCTION: Congenital clubfoot is a common birth defect that affects at least 0.1% of all births. Nearly 25% cases are familial and the remaining are sporadic in inheritance. Copy number variants (CNVs) involving transcriptional regulators of limb development, including PITX1 and TBX4, have previously been shown to cause familial clubfoot, but much of the heritability remains unexplained. METHODS: Exome sequence data from 816 unrelated clubfoot cases and 2645 in-house controls were analysed using coverage data to identify rare CNVs. The precise size and location of duplications were then determined using high-density Affymetrix Cytoscan chromosomal microarray (CMA). Segregation in families and de novo status were determined using qantitative PCR. RESULTS: Chromosome Xp22.33 duplications involving SHOX were identified in 1.1% of cases (9/816) compared with 0.07% of in-house controls (2/2645) (p=7.98×10-5, OR=14.57) and 0.27% (38/13592) of Atherosclerosis Risk in Communities/the Wellcome Trust Case Control Consortium 2 controls (p=0.001, OR=3.97). CMA validation confirmed an overlapping 180.28 kb duplicated region that included SHOX exons as well as downstream non-coding regions. In four of six sporadic cases where DNA was available for unaffected parents, the duplication was de novo. The probability of four de novo mutations in SHOX by chance in a cohort of 450 sporadic clubfoot cases is 5.4×10-10. CONCLUSIONS: Microduplications of the pseudoautosomal chromosome Xp22.33 region (PAR1) containing SHOX and downstream enhancer elements occur in ~1% of patients with clubfoot. SHOX and regulatory regions have previously been implicated in skeletal dysplasia as well as idiopathic short stature, but have not yet been reported in clubfoot. SHOX duplications likely contribute to clubfoot pathogenesis by altering early limb development.


Asunto(s)
Pie Equinovaro/genética , Predisposición Genética a la Enfermedad , Factores de Transcripción Paired Box/genética , Proteína de la Caja Homeótica de Baja Estatura/genética , Proteínas de Dominio T Box/genética , Adolescente , Niño , Preescolar , Duplicación Cromosómica/genética , Pie Equinovaro/patología , Variaciones en el Número de Copia de ADN/genética , Duplicación de Gen/genética , Humanos , Lactante , Análisis por Micromatrices , Persona de Mediana Edad , Linaje , Regiones Pseudoautosómicas/genética , Secuenciación del Exoma
10.
Arch Dis Child Educ Pract Ed ; 106(3): 149-151, 2021 06.
Artículo en Inglés | MEDLINE | ID: mdl-31467065

RESUMEN

A boy aged 12 years was referred with short stature. He was born at term, of adequate weight (10-25th centile) and length (10-25th centile), which settled to just below the third centile from 18 months of age, with a growth deceleration in the last 6 months (growth velocity -2.1 standard deviation score, according to Tanner charts). He was otherwise asymptomatic. His mother's height was 155 cm, and father's height 158 cm, and he was growing near his target height centile (-2.26 SDS, <3rd centile).On examination, his height was -2.22 SDS, with normal weight and body mass index (BMI). Pubertal stage corresponded to Tanner 2, with a testicular volume of 4 mL. His legs and forearms appeared shorter, with arm span/height ratio 0.93 (normal value >0.965) and sitting height/height ratio 0.56 (slightly above the normal upper value of 0.55). He resembled his father, whose wrists were abnormally curved (figure 1). The patient's hand X-ray showed that bone age was similar to chronological age.


Asunto(s)
Trastornos del Crecimiento , Estatura , Preescolar , Trastornos del Crecimiento/diagnóstico , Proteínas de Homeodominio , Humanos , Lactante , Masculino , Valores de Referencia , Proteína de la Caja Homeótica de Baja Estatura
11.
Med Sci Monit ; 26: e921233, 2020 Feb 07.
Artículo en Inglés | MEDLINE | ID: mdl-32032347

RESUMEN

BACKGROUND Osteosarcoma is a common malignant tumor of musculoskeletal stromal cells. Osteosarcoma clinical behavior depends mostly on the histologic grade, the site of primary tumor, the response to chemotherapy, and the presence of pulmonary metastases. The aim of this study was to knockout SHOX CNE9/10 in U2OS osteosarcoma cells and to analyze the effects on cell growth and apoptosis. MATERIAL AND METHODS U2OS cells with CNE9 knockout and U2OS cells with CNE10 knockout were established via the CRISPR/Cas9 system. Sanger sequencing was used to detect the success of the knockdown experiment. Western blotting and quantitative polymerase chain reaction were used to detect the expression levels of short stature homeobox-containing gene (SHOX) protein and messenger RNA (mRNA) after knockdown of CNE9 and CNE10. The cell viability and apoptotic rate were detected by the Cell Counting Kit-8 method and by flow cytometry. RESULTS The Sanger sequencing results showed that the knockdown experiment was successful. The levels of SHOX mRNA and protein were significantly reduced after knocking down CNE9 and CNE10. Knockdown of CNE9 and CNE10 significantly increased the growth and inhibited the apoptosis of U2OS osteosarcoma cells. CNE9/CNE10 knockdown U2OS cells were successfully constructed. CONCLUSIONS Knockdown of CNE9 and CNE10 promoted U2OS cell growth and inhibited apoptosis by decreasing SHOX expression. This CNE9/CNE10 knockout U2OS cell model could provide a bridge for the research on SHOX and CNEs in osteosarcoma.


Asunto(s)
Apoptosis , Neoplasias Óseas/genética , ADN Intergénico/genética , Osteosarcoma/genética , Proteína de la Caja Homeótica de Baja Estatura/genética , Apoptosis/genética , Secuencia de Bases , Neoplasias Óseas/patología , Línea Celular Tumoral , Proliferación Celular/genética , Técnicas de Inactivación de Genes , Humanos , Osteosarcoma/patología , Proteína de la Caja Homeótica de Baja Estatura/metabolismo
12.
Cytogenet Genome Res ; 158(2): 56-62, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31158835

RESUMEN

SHOX resides in the short arm pseudoautosomal region (PAR1) of the sex chromosomes and escapes X inactivation. SHOX haploinsufficiency underlies idiopathic short stature (ISS) and Leri-Weill dyschondrosteosis (LWD). A substantial percentage of cases with SHOX haploinsufficiency arise from pseudoautosomal copy number variations (CNVs) involving putative enhancer regions of SHOX. Our previous study using peripheral blood samples showed that some CpG dinucleotides adjacent to SHOX exon 1 were hypomethylated in a healthy woman and methylated in a woman with gross X chromosomal rearrangements. However, it remains unknown whether submicroscopic pseudoautosomal CNVs cause aberrant DNA methylation of SHOX-flanking CpG islands. In this study, we examined the DNA methylation status of SHOX-flanking CpG islands in 50 healthy individuals and 10 ISS/LWD patients with pseudoautosomal CNVs. In silico analysis detected 3 CpG islands within the 20-kb region from the translation start site of SHOX. Pyrosequencing and bisulfite sequencing of genomic DNA samples revealed that these CpG islands were barely methylated in peripheral blood cells and cultured chondrocytes of healthy individuals, as well as in peripheral blood cells of ISS/LWD patients with pseudoautosomal CNVs. These results, in conjunction with our previous findings, indicate that the DNA methylation status of SHOX-flanking CpG islands can be affected by gross X-chromosomal abnormalities, but not by submicroscopic CNVs in PAR1. Such CNVs likely disturb SHOX expression through DNA methylation-independent mechanisms, which need to be determined in future studies.


Asunto(s)
Metilación de ADN , Enfermedades Genéticas Ligadas al Cromosoma X/genética , Trastornos del Crecimiento/genética , Osteocondrodisplasias/genética , Proteína de la Caja Homeótica de Baja Estatura/genética , Adolescente , Adulto , Estudios de Casos y Controles , Células Cultivadas , Niño , Preescolar , Condrocitos , Islas de CpG , Variaciones en el Número de Copia de ADN , Femenino , Humanos , Análisis de Secuencia de ADN
13.
Cytogenet Genome Res ; 157(3): 135-140, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-30933954

RESUMEN

We report a patient with developmental delay, brachydactyly type E, short stature, and tetralogy of Fallot. Brachydactyly-mental retardation syndrome (BDMR) was suspected based on the phenotype; however, array CGH excluded a 2q37 deletion, but identified a deletion encompassing the SHOX gene. BDMR is characterized by cognitive impairment, skeletal abnormalities involving hands and feet, short stature, and overweight. Most affected individuals carry relatively large 2q37 deletions encompassing HDAC4. This gene encodes a histone deacetylase involved in epigenetic regulation of cell growth and differentiation, specifically during endochondral bone formation in chondrocyte hypertrophy. Since SHOX haploinsufficiency can cause skeletal defects and short stature but would not fully explain the clinical picture of this patient, exome sequencing was performed, and a heterozygous HDAC8 frameshift mutation was identified. HDAC8 is a distinct histone deacetylase involved in cohesin recycling and is responsible for an X-linked dominant Cornelia de Lange-like phenotype. A new blended clinical phenotype may be explained by the result of a dual molecular diagnosis, which represents a combination of 2 independent genetic defects, with relevant implications for genetic counseling, clinical management, and prognosis.


Asunto(s)
Síndrome de Cornelia de Lange/diagnóstico , Mutación del Sistema de Lectura , Eliminación de Gen , Trastornos del Crecimiento/diagnóstico , Histona Desacetilasas/genética , Osteocondrodisplasias/diagnóstico , Proteínas Represoras/genética , Proteína de la Caja Homeótica de Baja Estatura/genética , Niño , Hibridación Genómica Comparativa , Síndrome de Cornelia de Lange/genética , Femenino , Trastornos del Crecimiento/genética , Haploinsuficiencia , Humanos , Osteocondrodisplasias/genética , Linaje , Fenotipo , Secuenciación del Exoma
14.
Clin Genet ; 96(3): 261-265, 2019 09.
Artículo en Inglés | MEDLINE | ID: mdl-31219618

RESUMEN

Short stature homeobox (SHOX) haploinsufficiency is a frequent cause of short stature. Despite advances in sequencing technologies, the identification of SHOX mutations continues to be performed using standard methods, including multiplex ligation-dependent probe amplification (MLPA) followed by Sanger sequencing. We designed a targeted panel of genes associated with growth impairment, including SHOX genomic and enhancer regions, to improve the resolution of next-generation sequencing for SHOX analysis. We used two software packages, CONTRA and Nexus Copy Number, in addition to visual analysis to investigate the presence of copy number variants (CNVs). We evaluated 15 patients with previously known SHOX defects, including point mutations, deletions and a duplication, and 77 patients with idiopathic short stature (ISS). The panel was able to confirm all known defects in the validation analysis. During the prospective evaluation, we identified two new partial SHOX deletions (one detected only by visual analysis), including an intragenic deletion not detected by MLPA. Additionally, we were able to determine the breakpoints in four cases. Our results show that the designed panel can be used for the molecular investigation of patients with ISS, and it may even detect CNVs in SHOX and its enhancers, which may be present in a significant fraction of patients.


Asunto(s)
Estudios de Asociación Genética , Predisposición Genética a la Enfermedad , Secuenciación de Nucleótidos de Alto Rendimiento , Mutación , Proteína de la Caja Homeótica de Baja Estatura/genética , Variaciones en el Número de Copia de ADN , Análisis Mutacional de ADN , Femenino , Genotipo , Humanos , Masculino , Fenotipo
15.
Am J Med Genet A ; 179(9): 1778-1782, 2019 09.
Artículo en Inglés | MEDLINE | ID: mdl-31228230

RESUMEN

SHOX haploinsufficiency leading to Leri-Weill dyschondrosteosis (LWD) and idiopathic short stature typically results from intragenic mutations or copy-number variations (CNVs) involving SHOX and/or its putative enhancer regions that are distributed in the genomic interval between 400 kb and 840 kb from Xpter/Ypter. Here, we report two sisters with LWD, who carried a deletion in the far-downstream region of SHOX. The 0.62 Mb deletion contained 50 single nucleotide polymorphisms (SNPs) and short insertions and deletions (indels), whose genotypes were linked to SHOX expression levels in the Genotype-Tissue Expression portal. Notably, most of these SNPs/indels accumulated within a ~20 kb interval that was positioned ~900 kb away from Xpter/Ypter. These SNPs/indels showed similar minor allele frequencies, indicating that they reside within a haplotype block. The ~20 kb interval was not evolutionarily conserved; however, it was associated with the previously determined peak of chromosome conformation capture profiling (4C)-seq. Importantly, the deletion in the present cases partially overlapped with CNVs of three previous cases with skeletal deformity and/or short stature. The results indicate that far-downstream CNVs constitute rare genetic causes of SHOX haploinsufficiency. These CNVs possibly impair SHOX expression through copy-number changes of a human-specific cis-regulatory haplotype block. This notion awaits further validation.


Asunto(s)
Variaciones en el Número de Copia de ADN/genética , Enanismo/genética , Trastornos del Crecimiento/genética , Osteocondrodisplasias/genética , Proteína de la Caja Homeótica de Baja Estatura/genética , Adolescente , Niño , Preescolar , Enanismo/diagnóstico por imagen , Enanismo/fisiopatología , Femenino , Regulación de la Expresión Génica/genética , Frecuencia de los Genes , Redes Reguladoras de Genes/genética , Genotipo , Trastornos del Crecimiento/diagnóstico por imagen , Trastornos del Crecimiento/fisiopatología , Haploinsuficiencia/genética , Haplotipos/genética , Humanos , Masculino , Mutación , Osteocondrodisplasias/diagnóstico por imagen , Osteocondrodisplasias/fisiopatología , Linaje , Polimorfismo de Nucleótido Simple/genética , Hermanos
16.
J Oral Maxillofac Surg ; 77(4): 762-768, 2019 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-30529377

RESUMEN

One of the most common causes of short stature is a defect of the short stature homeobox-containing (SHOX) gene, which is located in pseudoautosomal region 1 on the distal end of the short arm of chromosomes Xp22.33 and Yp11.32. More than 300 different mutations in the SHOX gene responsible for short stature syndrome have been described. The phenotypic expression of SHOX haploinsufficiency is remarkably varied. The 3 typical clinical presentations, from least to most severe, are idiopathic short stature without skeletal malformations, Leri-Weill dyschondrosteosis (LWD), and Langer mesomelic dysplasia, which is believed to represent the homozygous form of LWD. Despite a higher prevalence in women, suggesting the potentiating action of high estrogen levels on the effects of SHOX deficiency, the syndrome was initially believed to have an autosomal pattern of inheritance. In reality, heterozygous SHOX mutations can be transferred from the Y to the X chromosome and vice versa. This phenomenon is called "the jumping SHOX gene" and corresponds to a pseudoautosomal dominant inheritance. LWD is characterized by mesomelic short stature and Madelung deformity defined by an upward and medial displacement of the radial joint surface, which restricts range of motion. Less specific dysmorphic signs associated with LWD, such as short hands and feet, scoliosis, or muscular hypertrophy, have been described. When reviewing the dental and maxillofacial signs, only limited and summary data (micrognathia and high arched palate) have been published in the literature. This report presents a case of LWD that highlights many other noteworthy dental and maxillofacial signs that are important to clearly identify and appropriately treat.


Asunto(s)
Trastornos del Crecimiento/diagnóstico , Anomalías Maxilofaciales/etiología , Osteocondrodisplasias/diagnóstico , Humanos , Masculino , Proteína de la Caja Homeótica de Baja Estatura/genética , Adulto Joven
17.
Am J Med Genet A ; 176(2): 450-454, 2018 02.
Artículo en Inglés | MEDLINE | ID: mdl-29271572

RESUMEN

Mesomelic and rhizo-mesomelic dysplasias are a group of disorders characterized by abnormal shortening of the limbs. One of the most common causes of mesomelic shortening is the loss of the transcription factor SHOX. In this clinical report, we present a patient who in addition to mesomelic shortening has severe rhizomelic shortening and developmental delay. Karyotyping revealed a recombinant X chromosome in which the region distal to Xp22.33 (where SHOX is found) was replaced with material from Xq28. Included in the region distal to Xq28 is the gene MECP2 and this patient presents with features of MECP2 duplication syndrome. We find that this patient has skeletal features not typical with the loss of SHOX that are likely explained by the rearrangement of the X chromosome. Further delineation of this rearrangement may allow for the identification of additional genetic mechanisms critical for the development of the limbs.


Asunto(s)
Enfermedades del Desarrollo Óseo/genética , Cromosomas Humanos X/genética , Discapacidades del Desarrollo/genética , Fémur/anomalías , Húmero/anomalías , Proteína 2 de Unión a Metil-CpG/genética , Proteína de la Caja Homeótica de Baja Estatura/genética , Enfermedades del Desarrollo Óseo/fisiopatología , Deleción Cromosómica , Duplicación Cromosómica/genética , Discapacidades del Desarrollo/fisiopatología , Enanismo , Femenino , Fémur/fisiopatología , Humanos , Húmero/fisiopatología , Hibridación Fluorescente in Situ , Lactante , Cariotipificación
18.
Pediatr Res ; 83(2): 438-444, 2018 02.
Artículo en Inglés | MEDLINE | ID: mdl-29211059

RESUMEN

BackgroundThe aim of this study was to estimate the prevalence of haploinsufficiency of short stature homeobox containing gene (SHOX) deficiency (SHOXD) in a population of short-statured children, and to analyze their phenotype and the performance of clinical scores.MethodsScreening for SHOXD was performed in 281 children with short stature by direct sequencing and multiplex ligation probe-dependent amplification. Subjects with SHOXD were compared with 117 matched short patients without SHOXD. We calculated the cutoff of growth velocity associated with the highest sensitivity and specificity as a screening test for SHOXD by receiver operating characteristic curves.ResultsThe prevalence of SHOXD was 6.8%. Subjects with SHOXD showed a lower growth velocity (P<0.05) and a higher prevalence of dysmorphic signs. The best cutoff for growth velocity was -1.5 standard deviation score (SDS) both in the whole population and in subjects with a Rappold score <7 and <4 points. Growth velocity was ≤-1.5 SDS or Rappold score was >7/>4 points in 17/17 of 19 children with SHOXD and in 49/65 of 117 subjects without SHOX mutations.ConclusionsGrowth rate ≤-1.5 SDS, even with negative Rappold score, may be useful to detect precociously children with SHOXD. Selecting children deserving the genetic test by using growth velocity or the Rappold score significantly increases the sensitivity in detecting mutations and decreases the specificity.


Asunto(s)
Trastornos del Crecimiento/genética , Proteína de la Caja Homeótica de Baja Estatura/deficiencia , Proteína de la Caja Homeótica de Baja Estatura/genética , Adolescente , Antropometría , Estatura/genética , Índice de Masa Corporal , Niño , Preescolar , Femenino , Pruebas Genéticas , Trastornos del Crecimiento/epidemiología , Haploinsuficiencia , Humanos , Lactante , Estudios Longitudinales , Masculino , Mutación , Fenotipo , Prevalencia , Curva ROC , Reproducibilidad de los Resultados , Sensibilidad y Especificidad
19.
J Formos Med Assoc ; 117(10): 909-914, 2018 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-29254682

RESUMEN

BACKGROUND: SHOX deficiency is a common cause of idiopathic short stature. The aim of this study was to describe the clinical characteristics and molecular findings of patients with SHOX deficiency in Taiwan. METHODS: A phenotype scoring system was used to evaluate several anthropometric measures in patients with idiopathic short stature. Twenty-three patients with a phenotype score >7 were enrolled for SHOX gene analysis by MLPA and sequencing. Another patient with a deletion/insertion of the short arm of the X chromosome containing the SHOX gene was enrolled for the assessment. RESULTS: SHOX deficiency was detected in 26% of short children with a phenotype score >7. The arm-span-to-height ratio was significantly lower in SHOX-D patients than in non-SHOX-D patients. In patients with SHOX deficiency, an arm-span-to-height ratio <96.5% and short forearm were the most common characteristics. Three patients also exhibited typical radiological findings. A molecular analysis of the SHOX gene revealed five patients with intragenic deletions, one with a deletion in the regulatory region, and one with a missense mutation at exon 5. CONCLUSION: The phenotype scoring system is useful to select children with SHOX deficiency in Taiwan. Family history and radiological image of the radius are also of value for the diagnosis. This study may aid physicians in the early diagnosis of children with SHOX deficiency.


Asunto(s)
Trastornos del Crecimiento/genética , Fenotipo , Proteína de la Caja Homeótica de Baja Estatura/genética , Adolescente , Estatura/genética , Estudios de Casos y Controles , Niño , Preescolar , Femenino , Eliminación de Gen , Trastornos del Crecimiento/diagnóstico por imagen , Humanos , Masculino , Proteína de la Caja Homeótica de Baja Estatura/deficiencia , Taiwán
20.
Pediatr Endocrinol Rev ; 16(Suppl 1): 80-90, 2018 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-30378785

RESUMEN

Growth failure is nearly universal in individuals with Turner syndrome (TS). It is a consequence of haploinsufficiency of the short stature homeobox gene located on the short arm of the X chromosome (SHOX). Without treatment, individuals with TS are expected to be on average 20 cm shorter than unaffected adult females. Short stature is cited by patients as one of their biggest burdens and may have an adverse impact on psychosocial well-being, pubertal timing, and ability to complete a variety of daily living activities. The routine use of recombinant human growth hormone (rhGH) treatment has increased height outcomes. Clinical evidence has strongly supported the efficacy and safety of this treatment. In this article we review the rationale for rhGH treatment in TS, the factors that affect treatment response, safety and monitoring considerations, and potential changes in the way rhGH may be utilized in TS care in the future.


Asunto(s)
Síndrome de Turner , Estatura , Trastornos del Crecimiento , Hormona del Crecimiento , Proteínas de Homeodominio , Hormona de Crecimiento Humana , Humanos , Proteína de la Caja Homeótica de Baja Estatura
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