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The Sequence Read Archive: explosive growth of sequencing data.
Kodama, Yuichi; Shumway, Martin; Leinonen, Rasko.
Afiliación
  • Kodama Y; Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems, Yata, Mishima 411-8540, Japan. ykodama@genes.nig.ac.jp
Nucleic Acids Res ; 40(Database issue): D54-6, 2012 Jan.
Article en En | MEDLINE | ID: mdl-22009675
New generation sequencing platforms are producing data with significantly higher throughput and lower cost. A portion of this capacity is devoted to individual and community scientific projects. As these projects reach publication, raw sequencing datasets are submitted into the primary next-generation sequence data archive, the Sequence Read Archive (SRA). Archiving experimental data is the key to the progress of reproducible science. The SRA was established as a public repository for next-generation sequence data as a part of the International Nucleotide Sequence Database Collaboration (INSDC). INSDC is composed of the National Center for Biotechnology Information (NCBI), the European Bioinformatics Institute (EBI) and the DNA Data Bank of Japan (DDBJ). The SRA is accessible at www.ncbi.nlm.nih.gov/sra from NCBI, at www.ebi.ac.uk/ena from EBI and at trace.ddbj.nig.ac.jp from DDBJ. In this article, we present the content and structure of the SRA and report on updated metadata structures, submission file formats and supported sequencing platforms. We also briefly outline our various responses to the challenge of explosive data growth.
Asunto(s)

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Bases de Datos de Ácidos Nucleicos / Secuenciación de Nucleótidos de Alto Rendimiento Idioma: En Revista: Nucleic Acids Res Año: 2012 Tipo del documento: Article País de afiliación: Japón

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Bases de Datos de Ácidos Nucleicos / Secuenciación de Nucleótidos de Alto Rendimiento Idioma: En Revista: Nucleic Acids Res Año: 2012 Tipo del documento: Article País de afiliación: Japón