EPIC-CoGe: managing and analyzing genomic data.
Bioinformatics
; 34(15): 2651-2653, 2018 08 01.
Article
en En
| MEDLINE
| ID: mdl-29474529
ABSTRACT
Summary:
The EPIC-CoGe browser is a web-based genome visualization utility that integrates the GMOD JBrowse genome browser with the extensive CoGe genome database (currently containing over 30 000 genomes). In addition, the EPIC-CoGe browser boasts many additional features over basic JBrowse, including enhanced search capability and on-the-fly analyses for comparisons and analyses between all types of functional and diversity genomics data. There is no installation required and data (genome, annotation, functional genomic and diversity data) can be loaded by following a simple point and click wizard, or using a REST API, making the browser widely accessible and easy to use by researchers of all computational skill levels. In addition, EPIC-CoGe and data tracks are easily embedded in other websites and JBrowse instances. Availability and implementation EPIC-CoGe Browser is freely available for use online through CoGe (https//genomevolution.org). Source code (MIT open source) is available https//github.com/LyonsLab/coge. Supplementary information Supplementary data are available at Bioinformatics online.
Texto completo:
1
Colección:
01-internacional
Banco de datos:
MEDLINE
Asunto principal:
Programas Informáticos
/
Genoma
/
Análisis de Secuencia de ADN
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Anotación de Secuencia Molecular
/
Visualización de Datos
Idioma:
En
Revista:
Bioinformatics
Asunto de la revista:
INFORMATICA MEDICA
Año:
2018
Tipo del documento:
Article
País de afiliación:
Estados Unidos