TETyper: a bioinformatic pipeline for classifying variation and genetic contexts of transposable elements from short-read whole-genome sequencing data.

Sheppard, Anna E; Stoesser, Nicole; German-Mesner, Ian; Vegesana, Kasi; Sarah Walker, A; Crook, Derrick W; Mathers, Amy J

Sheppard, Anna E; Stoesser, Nicole; German-Mesner, Ian; Vegesana, Kasi; Sarah Walker, A; Crook, Derrick W; Mathers, Amy J.

Afiliación

Sheppard AE; 2âNational Institute for Health Research Health Protection Research Unit in Healthcare Associated Infections and Antimicrobial Resistance, University of Oxford, Oxford, UK.
Stoesser N; 1âNuffield Department of Medicine, University of Oxford, Oxford, UK.
German-Mesner I; 1âNuffield Department of Medicine, University of Oxford, Oxford, UK.
Vegesana K; 3âHealth Information & Technology, University of Virginia Health System, Charlottesville, Virginia, USA.
Sarah Walker A; 3âHealth Information & Technology, University of Virginia Health System, Charlottesville, Virginia, USA.
Crook DW; 1âNuffield Department of Medicine, University of Oxford, Oxford, UK.
Mathers AJ; 1âNuffield Department of Medicine, University of Oxford, Oxford, UK.

Microb Genom ; 4(12)2018 12.

Article en En | MEDLINE | ID: mdl-30465646

Asunto(s)

Biología Computacional; Elementos Transponibles de ADN; Infecciones por Klebsiella/genética; Klebsiella pneumoniae/genética; Secuenciación Completa del Genoma; Femenino; Humanos; Infecciones por Klebsiella/epidemiología; Masculino

Palabras clave

Klebsiella pneumoniae carbapenemase (KPC); antimicrobial resistance (AMR); mobile genetic element (MGE); transposable element (TE); transposon; whole-genome sequencing (WGS)

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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Infecciones por Klebsiella / Elementos Transponibles de ADN / Biología Computacional / Secuenciación Completa del Genoma / Klebsiella pneumoniae Límite: Female / Humans / Male Idioma: En Revista: Microb Genom Año: 2018 Tipo del documento: Article País de afiliación: Reino Unido

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