Treerecs: an integrated phylogenetic tool, from sequences to reconciliations.
Bioinformatics
; 36(18): 4822-4824, 2020 09 15.
Article
en En
| MEDLINE
| ID: mdl-33085745
ABSTRACT
MOTIVATION Gene and species tree reconciliation methods are used to interpret gene trees, root them and correct uncertainties that are due to scarcity of signal in multiple sequence alignments. So far, reconciliation tools have not been integrated in standard phylogenetic software and they either lack performance on certain functions, or usability for biologists. RESULTS:
We present Treerecs, a phylogenetic software based on duplication-loss reconciliation. Treerecs is simple to install and to use. It is fast and versatile, has a graphic output, and can be used along with methods for phylogenetic inference on multiple alignments like PLL and Seaview. AVAILABILITY AND IMPLEMENTATION Treerecs is open-source. Its source code (C++, AGPLv3) and manuals are available from https//project.inria.fr/treerecs/.
Texto completo:
1
Colección:
01-internacional
Banco de datos:
MEDLINE
Asunto principal:
Algoritmos
/
Evolución Molecular
Idioma:
En
Revista:
Bioinformatics
Asunto de la revista:
INFORMATICA MEDICA
Año:
2020
Tipo del documento:
Article
País de afiliación:
Francia