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Methylphosphonate Degradation and Salt-Tolerance Genes of Two Novel Halophilic Marivita Metagenome-Assembled Genomes from Unrestored Solar Salterns.
Bueno de Mesquita, Clifton P; Zhou, Jinglie; Theroux, Susanna; Tringe, Susannah G.
Afiliación
  • Bueno de Mesquita CP; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Zhou J; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
  • Theroux S; Southern California Coastal Water Research Project, Costa Mesa, CA 92626, USA.
  • Tringe SG; Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.
Genes (Basel) ; 13(1)2022 01 15.
Article en En | MEDLINE | ID: mdl-35052488
ABSTRACT
Aerobic bacteria that degrade methylphosphonates and produce methane as a byproduct have emerged as key players in marine carbon and phosphorus cycles. Here, we present two new draft genome sequences of the genus Marivita that were assembled from metagenomes from hypersaline former industrial salterns and compare them to five other Marivita reference genomes. Phylogenetic analyses suggest that both of these metagenome-assembled genomes (MAGs) represent new species in the genus. Average nucleotide identities to the closest taxon were <85%. The MAGs were assembled with SPAdes, binned with MetaBAT, and curated with scaffold extension and reassembly. Both genomes contained the phnCDEGHIJLMP suite of genes encoding the full C-P lyase pathway of methylphosphonate degradation and were significantly more abundant in two former industrial salterns than in nearby reference and restored wetlands, which have lower salinity levels and lower methane emissions than the salterns. These organisms contain a variety of compatible solute biosynthesis and transporter genes to cope with high salinity levels but harbor only slightly acidic proteomes (mean isoelectric point of 6.48).
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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Compuestos Organofosforados / Aguas Salinas / Rhodobacteraceae / Metagenoma / Salinidad / Tolerancia a la Sal / Metano Idioma: En Revista: Genes (Basel) Año: 2022 Tipo del documento: Article País de afiliación: Estados Unidos

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Compuestos Organofosforados / Aguas Salinas / Rhodobacteraceae / Metagenoma / Salinidad / Tolerancia a la Sal / Metano Idioma: En Revista: Genes (Basel) Año: 2022 Tipo del documento: Article País de afiliación: Estados Unidos