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Systematic benchmarking of single-cell ATAC-sequencing protocols.
De Rop, Florian V; Hulselmans, Gert; Flerin, Chris; Soler-Vila, Paula; Rafels, Albert; Christiaens, Valerie; González-Blas, Carmen Bravo; Marchese, Domenica; Caratù, Ginevra; Poovathingal, Suresh; Rozenblatt-Rosen, Orit; Slyper, Michael; Luo, Wendy; Muus, Christoph; Duarte, Fabiana; Shrestha, Rojesh; Bagdatli, S Tansu; Corces, M Ryan; Mamanova, Lira; Knights, Andrew; Meyer, Kerstin B; Mulqueen, Ryan; Taherinasab, Akram; Maschmeyer, Patrick; Pezoldt, Jörn; Lambert, Camille Lucie Germaine; Iglesias, Marta; Najle, Sebastián R; Dossani, Zain Y; Martelotto, Luciano G; Burkett, Zach; Lebofsky, Ronald; Martin-Subero, José Ignacio; Pillai, Satish; Sebé-Pedrós, Arnau; Deplancke, Bart; Teichmann, Sarah A; Ludwig, Leif S; Braun, Theodore P; Adey, Andrew C; Greenleaf, William J; Buenrostro, Jason D; Regev, Aviv; Aerts, Stein; Heyn, Holger.
Afiliación
  • De Rop FV; VIB Center for Brain and Disease Research, Leuven, Belgium.
  • Hulselmans G; Department of Human Genetics, KU Leuven, Leuven, Belgium.
  • Flerin C; VIB Center for Brain and Disease Research, Leuven, Belgium.
  • Soler-Vila P; Department of Human Genetics, KU Leuven, Leuven, Belgium.
  • Rafels A; VIB Center for Brain and Disease Research, Leuven, Belgium.
  • Christiaens V; Department of Human Genetics, KU Leuven, Leuven, Belgium.
  • González-Blas CB; Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain.
  • Marchese D; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.
  • Caratù G; VIB Center for Brain and Disease Research, Leuven, Belgium.
  • Poovathingal S; Department of Human Genetics, KU Leuven, Leuven, Belgium.
  • Rozenblatt-Rosen O; VIB Center for Brain and Disease Research, Leuven, Belgium.
  • Slyper M; Department of Human Genetics, KU Leuven, Leuven, Belgium.
  • Luo W; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.
  • Muus C; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.
  • Duarte F; VIB Center for Brain and Disease Research, Leuven, Belgium.
  • Shrestha R; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
  • Bagdatli ST; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
  • Corces MR; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
  • Mamanova L; Broad Institute of MIT and Harvard, Cambridge, MA, USA.
  • Knights A; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, USA.
  • Meyer KB; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
  • Mulqueen R; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, MA, USA.
  • Taherinasab A; Gene Regulation Observatory, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
  • Maschmeyer P; Department of Genetics, Stanford University, Stanford, CA, USA.
  • Pezoldt J; Gladstone Institute of Neurological Disease, San Francisco, CA, USA.
  • Lambert CLG; Wellcome Sanger Institute, Cambridge, UK.
  • Iglesias M; Wellcome Sanger Institute, Cambridge, UK.
  • Najle SR; Wellcome Sanger Institute, Cambridge, UK.
  • Dossani ZY; Department of Molecular and Medical Genetics, Oregon Health & Science University, Portland, OR, USA.
  • Martelotto LG; Division of Hematology & Medical Oncology, Knight Cancer Institute, Oregon Health & Sciences University, Portland, OR, USA.
  • Burkett Z; Division of Oncologic Sciences, Knight Cancer Institute, Oregon Health & Sciences University, Portland, OR, USA.
  • Lebofsky R; Berlin Institute of Health at Charité-Universitätsmedizin Berlin, Berlin, Germany.
  • Martin-Subero JI; Max Delbrück Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin Institute for Medical Systems Biology (BIMSB), Berlin, Germany.
  • Pillai S; Laboratory of Systems Biology and Genetics, Institute of Bioengineering, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.
  • Sebé-Pedrós A; Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland.
  • Deplancke B; Laboratory of Systems Biology and Genetics, Institute of Bioengineering, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.
  • Teichmann SA; Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland.
  • Ludwig LS; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.
  • Braun TP; Universitat Pompeu Fabra (UPF), Barcelona, Spain.
  • Adey AC; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.
  • Greenleaf WJ; Vitalant Research Institute, San Francisco, CA, USA.
  • Buenrostro JD; Department of Laboratory Medicine, University of California, San Francisco, CA, USA.
  • Regev A; Adelaide Centre for Epigenetics and the South Australian Immunogenomics Cancer Institute, Faculty of Health and Medical Sciences, The University of Adelaide, Adelaide, South Australia, Australia.
  • Aerts S; University of Melbourne Centre for Cancer Research, Victoria Comprehensive Cancer Centre, Melbourne, Victoria, Australia.
  • Heyn H; Digital Biology Group, Bio-Rad, Pleasanton, CA, USA.
Nat Biotechnol ; 2023 Aug 03.
Article en En | MEDLINE | ID: mdl-37537502
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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Tipo de estudio: Guideline Idioma: En Revista: Nat Biotechnol Asunto de la revista: BIOTECNOLOGIA Año: 2023 Tipo del documento: Article País de afiliación: Bélgica
Texto completo
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Tipo de estudio: Guideline Idioma: En Revista: Nat Biotechnol Asunto de la revista: BIOTECNOLOGIA Año: 2023 Tipo del documento: Article País de afiliación: Bélgica